Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_J15
(390 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P12996|BIOB_ECOLI Biotin synthase (Biotin synthetase) 31 0.99
sp|P36569|BIOB_SERMA Biotin synthase (Biotin synthetase) 31 0.99
sp|Q47862|BIOB_ENTAG Biotin synthase (Biotin synthetase) 30 1.3
sp|P12678|BIOB_SALTY Biotin synthase (Biotin synthetase) 30 1.7
sp|Q9FVT2|EF1H_ARATH Probable elongation factor 1-gamma 2 (... 29 2.9
sp|Q64133|AOFA_MOUSE Amine oxidase [flavin-containing] A (M... 28 8.4
>sp|P12996|BIOB_ECOLI Biotin synthase (Biotin synthetase)
Length = 346
Score = 30.8 bits (68), Expect = 0.99
Identities = 13/49 (26%), Positives = 29/49 (59%)
Frame = -1
Query: 306 KQINKQLEAVCVYIEEIPIFNKCTIIIIYH*KKDKNMMNYKQLNYNQEQ 160
+Q+N+Q +A+C IF C ++ + ++DK++ +++L N +Q
Sbjct: 266 EQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGLNPQQ 314
>sp|P36569|BIOB_SERMA Biotin synthase (Biotin synthetase)
Length = 346
Score = 30.8 bits (68), Expect = 0.99
Identities = 13/49 (26%), Positives = 29/49 (59%)
Frame = -1
Query: 306 KQINKQLEAVCVYIEEIPIFNKCTIIIIYH*KKDKNMMNYKQLNYNQEQ 160
+Q+N+Q +A+C IF C ++ + ++DK++ +++L N +Q
Sbjct: 267 EQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGLNPQQ 315
>sp|Q47862|BIOB_ENTAG Biotin synthase (Biotin synthetase)
Length = 346
Score = 30.4 bits (67), Expect = 1.3
Identities = 13/49 (26%), Positives = 29/49 (59%)
Frame = -1
Query: 306 KQINKQLEAVCVYIEEIPIFNKCTIIIIYH*KKDKNMMNYKQLNYNQEQ 160
+Q+N+Q +A+C IF C ++ + ++DK++ +++L N +Q
Sbjct: 266 EQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDVQLFRKLGLNPQQ 314
>sp|P12678|BIOB_SALTY Biotin synthase (Biotin synthetase)
Length = 346
Score = 30.0 bits (66), Expect = 1.7
Identities = 13/49 (26%), Positives = 28/49 (57%)
Frame = -1
Query: 306 KQINKQLEAVCVYIEEIPIFNKCTIIIIYH*KKDKNMMNYKQLNYNQEQ 160
+Q+N+Q +A+C IF C ++ + +DK++ +++L N +Q
Sbjct: 266 EQMNEQTQAMCFMAGANSIFYGCKLLTTPNPAEDKDLQLFRKLGLNPQQ 314
>sp|Q9FVT2|EF1H_ARATH Probable elongation factor 1-gamma 2 (EF-1-gamma) (eEF-1B gamma)
Length = 413
Score = 29.3 bits (64), Expect = 2.9
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +2
Query: 236 VHLLKIGISSM*THTASNCLLICLGSCVCACDWLNAYEMNLGF 364
+ LK G+ ++ TH ASN L+ G V D + +NLGF
Sbjct: 131 ISALKRGLEALNTHLASNTFLV--GHSVTLADIVTICNLNLGF 171
>sp|Q64133|AOFA_MOUSE Amine oxidase [flavin-containing] A (Monoamine oxidase type A)
(MAO-A)
Length = 526
Score = 27.7 bits (60), Expect = 8.4
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 64 DQFRFFIYIYSNNYNHYQLQHMISALPP 147
DQ I I + N+ HY+ +++ISA+PP
Sbjct: 248 DQTDDNIIIETLNHEHYECKYVISAIPP 275
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,457,392
Number of Sequences: 369166
Number of extensions: 669699
Number of successful extensions: 1473
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1468
length of database: 68,354,980
effective HSP length: 96
effective length of database: 50,620,420
effective search space used: 1670473860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)