Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_J14-2
(242 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P53478|ACT5_CHICK Actin, cytoplasmic type 5 172 2e-43
sp|P29751|ACTB_RABIT Actin, cytoplasmic 1 (Beta-actin) 172 2e-43
sp|P41113|ACT3_PODCA Actin-3 172 2e-43
sp|Q25010|ACT3A_HELAM Actin, cytoplasmic A3a 172 2e-43
sp|P41112|ACT1_PODCA Actin-1/2 172 2e-43
sp|Q03341|ACT2_ECHGR Actin-2 172 2e-43
sp|P53471|ACT2_SCHMA Actin-2 172 2e-43
sp|P10984|ACT2_CAEEL Actin-2 172 2e-43
sp|P10986|ACT4_CAEEL Actin-4 172 2e-43
sp|O93400|ACTB_XENLA Actin, cytoplasmic 1 (Beta-actin) (Cyt... 172 2e-43
>sp|P53478|ACT5_CHICK Actin, cytoplasmic type 5
Length = 376
Score = 172 bits (437), Expect = 2e-43
Identities = 80/80 (100%), Positives = 80/80 (100%)
Frame = +2
Query: 2 GFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNW 181
GFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNW
Sbjct: 21 GFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNW 80
Query: 182 DDMEKIWHHTFYNELRVAPE 241
DDMEKIWHHTFYNELRVAPE
Sbjct: 81 DDMEKIWHHTFYNELRVAPE 100
>sp|P29751|ACTB_RABIT Actin, cytoplasmic 1 (Beta-actin)
Length = 375
Score = 172 bits (437), Expect = 2e-43
Identities = 80/80 (100%), Positives = 80/80 (100%)
Frame = +2
Query: 2 GFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNW 181
GFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNW
Sbjct: 20 GFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNW 79
Query: 182 DDMEKIWHHTFYNELRVAPE 241
DDMEKIWHHTFYNELRVAPE
Sbjct: 80 DDMEKIWHHTFYNELRVAPE 99
>sp|P41113|ACT3_PODCA Actin-3
Length = 376
Score = 172 bits (437), Expect = 2e-43
Identities = 80/80 (100%), Positives = 80/80 (100%)
Frame = +2
Query: 2 GFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNW 181
GFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNW
Sbjct: 21 GFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNW 80
Query: 182 DDMEKIWHHTFYNELRVAPE 241
DDMEKIWHHTFYNELRVAPE
Sbjct: 81 DDMEKIWHHTFYNELRVAPE 100
>sp|Q25010|ACT3A_HELAM Actin, cytoplasmic A3a
Length = 376
Score = 172 bits (437), Expect = 2e-43
Identities = 80/80 (100%), Positives = 80/80 (100%)
Frame = +2
Query: 2 GFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNW 181
GFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNW
Sbjct: 21 GFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNW 80
Query: 182 DDMEKIWHHTFYNELRVAPE 241
DDMEKIWHHTFYNELRVAPE
Sbjct: 81 DDMEKIWHHTFYNELRVAPE 100
>sp|P41112|ACT1_PODCA Actin-1/2
Length = 376
Score = 172 bits (437), Expect = 2e-43
Identities = 80/80 (100%), Positives = 80/80 (100%)
Frame = +2
Query: 2 GFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNW 181
GFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNW
Sbjct: 21 GFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNW 80
Query: 182 DDMEKIWHHTFYNELRVAPE 241
DDMEKIWHHTFYNELRVAPE
Sbjct: 81 DDMEKIWHHTFYNELRVAPE 100
>sp|Q03341|ACT2_ECHGR Actin-2
Length = 376
Score = 172 bits (437), Expect = 2e-43
Identities = 80/80 (100%), Positives = 80/80 (100%)
Frame = +2
Query: 2 GFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNW 181
GFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNW
Sbjct: 21 GFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNW 80
Query: 182 DDMEKIWHHTFYNELRVAPE 241
DDMEKIWHHTFYNELRVAPE
Sbjct: 81 DDMEKIWHHTFYNELRVAPE 100
>sp|P53471|ACT2_SCHMA Actin-2
Length = 376
Score = 172 bits (437), Expect = 2e-43
Identities = 80/80 (100%), Positives = 80/80 (100%)
Frame = +2
Query: 2 GFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNW 181
GFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNW
Sbjct: 21 GFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNW 80
Query: 182 DDMEKIWHHTFYNELRVAPE 241
DDMEKIWHHTFYNELRVAPE
Sbjct: 81 DDMEKIWHHTFYNELRVAPE 100
>sp|P10984|ACT2_CAEEL Actin-2
Length = 376
Score = 172 bits (437), Expect = 2e-43
Identities = 80/80 (100%), Positives = 80/80 (100%)
Frame = +2
Query: 2 GFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNW 181
GFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNW
Sbjct: 21 GFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNW 80
Query: 182 DDMEKIWHHTFYNELRVAPE 241
DDMEKIWHHTFYNELRVAPE
Sbjct: 81 DDMEKIWHHTFYNELRVAPE 100
>sp|P10986|ACT4_CAEEL Actin-4
Length = 376
Score = 172 bits (437), Expect = 2e-43
Identities = 80/80 (100%), Positives = 80/80 (100%)
Frame = +2
Query: 2 GFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNW 181
GFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNW
Sbjct: 21 GFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNW 80
Query: 182 DDMEKIWHHTFYNELRVAPE 241
DDMEKIWHHTFYNELRVAPE
Sbjct: 81 DDMEKIWHHTFYNELRVAPE 100
>sp|O93400|ACTB_XENLA Actin, cytoplasmic 1 (Beta-actin) (Cytoplasmic beta actin)
Length = 375
Score = 172 bits (437), Expect = 2e-43
Identities = 80/80 (100%), Positives = 80/80 (100%)
Frame = +2
Query: 2 GFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNW 181
GFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNW
Sbjct: 20 GFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNW 79
Query: 182 DDMEKIWHHTFYNELRVAPE 241
DDMEKIWHHTFYNELRVAPE
Sbjct: 80 DDMEKIWHHTFYNELRVAPE 99
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,868,675
Number of Sequences: 369166
Number of extensions: 594745
Number of successful extensions: 2455
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2425
length of database: 68,354,980
effective HSP length: 51
effective length of database: 58,933,495
effective search space used: 1709071355
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)