Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_J14-1
(259 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P30371|TGFB2_CHICK Transforming growth factor beta 2 pre... 31 1.00
sp|P61811|TGFB2_CERAE Transforming growth factor beta 2 pre... 30 2.2
sp|Q07257|TGFB2_RAT Transforming growth factor beta 2 precu... 30 2.2
sp|P09858|TGFB2_PIG Transforming growth factor beta 2 precu... 30 2.2
sp|Q9FAB3|SPKA_SYNY3 Serine/threonine-protein kinase A 28 6.5
>sp|P30371|TGFB2_CHICK Transforming growth factor beta 2 precursor (TGF-beta 2)
Length = 412
Score = 30.8 bits (68), Expect = 1.00
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 113 VHKVLHHRESHLNDQLSLNRPCSNF 187
VH+ LHHR+ +L ++SL+ PC F
Sbjct: 206 VHEWLHHRDRNLGFKISLHCPCCTF 230
>sp|P61811|TGFB2_CERAE Transforming growth factor beta 2 precursor (TGF-beta 2)
(Glioblastoma-derived T-cell suppressor factor) (G-TSF)
(BSC-1 cell growth inhibitor) (Polyergin)
sp|P61812|TGFB2_HUMAN Transforming growth factor beta 2 precursor (TGF-beta 2)
(Glioblastoma-derived T-cell suppressor factor) (G-TSF)
(BSC-1 cell growth inhibitor) (Polyergin) (Cetermin)
Length = 414
Score = 29.6 bits (65), Expect = 2.2
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2
Query: 113 VHKVLHHRESHLNDQLSLNRPCSNF 187
VH+ LHH++ +L ++SL+ PC F
Sbjct: 207 VHEWLHHKDRNLGFKISLHCPCCTF 231
>sp|Q07257|TGFB2_RAT Transforming growth factor beta 2 precursor (TGF-beta 2)
Length = 442
Score = 29.6 bits (65), Expect = 2.2
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2
Query: 113 VHKVLHHRESHLNDQLSLNRPCSNF 187
VH+ LHH++ +L ++SL+ PC F
Sbjct: 235 VHEWLHHKDRNLGFKISLHCPCCTF 259
>sp|P09858|TGFB2_PIG Transforming growth factor beta 2 precursor (TGF-beta 2)
Length = 435
Score = 29.6 bits (65), Expect = 2.2
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2
Query: 113 VHKVLHHRESHLNDQLSLNRPCSNF 187
VH+ LHH++ +L ++SL+ PC F
Sbjct: 207 VHEWLHHKDRNLGFKISLHCPCCTF 231
>sp|Q9FAB3|SPKA_SYNY3 Serine/threonine-protein kinase A
Length = 521
Score = 28.1 bits (61), Expect = 6.5
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 32 MDSVQYLVPCLLRKFQIHQIPHPLFLWVHKVLHHRE 139
M S++Y +F + PHP+ LW+ VL+HRE
Sbjct: 383 MSSIRY------NQFLLMTSPHPMVLWI-TVLYHRE 411
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,143,935
Number of Sequences: 369166
Number of extensions: 265336
Number of successful extensions: 637
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 68,354,980
effective HSP length: 56
effective length of database: 58,009,820
effective search space used: 1682284780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)