Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_J09
(792 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P06603|TBA1_DROME Tubulin alpha-1 chain 504 e-142
sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-t... 503 e-142
sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain 503 e-142
sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1... 503 e-142
sp|P52273|TBA_BOMMO Tubulin alpha chain 501 e-142
sp|P18258|TBA1_PARLI Tubulin alpha-1 chain 501 e-141
sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific 501 e-141
sp|P06605|TBA3_DROME Tubulin alpha-3 chain 501 e-141
sp|Q9BQE3|TBA6_HUMAN Tubulin alpha-6 chain (Alpha-tubulin 6) 499 e-141
sp|P68373|TBA6_MOUSE Tubulin alpha-6 chain (Alpha-tubulin 6... 499 e-141
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain
Length = 450
Score = 504 bits (1298), Expect = e-142
Identities = 248/264 (93%), Positives = 251/264 (95%)
Frame = +1
Query: 1 TGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFH 180
TGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFH
Sbjct: 80 TGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFH 139
Query: 181 XXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSD 360
LLMERLSVDYGKKSKLEFA+YPAPQ++TAVVEPYNSILTTHTTLEHSD
Sbjct: 140 SFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSD 199
Query: 361 CAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL 540
CAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL
Sbjct: 200 CAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL 259
Query: 541 VPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 720
VPYPRIHFPL TYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY
Sbjct: 260 VPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 319
Query: 721 RGDVVPKDVNAAIATIKTKRTIQF 792
RGDVVPKDVNAAIATIKTKRTIQF
Sbjct: 320 RGDVVPKDVNAAIATIKTKRTIQF 343
>sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-tubulin 3/7) (Alpha-tubulin
isotype M-alpha-3/7)
sp|Q68FR8|TBA3_RAT Tubulin alpha-3 chain (Alpha-tubulin 3)
sp|Q13748|TBA2_HUMAN Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 450
Score = 503 bits (1295), Expect = e-142
Identities = 248/264 (93%), Positives = 251/264 (95%)
Frame = +1
Query: 1 TGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFH 180
TGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLAD CTGLQGFLIFH
Sbjct: 80 TGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADLCTGLQGFLIFH 139
Query: 181 XXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSD 360
LLMERLSVDYGKKSKLEFA+YPAPQ++TAVVEPYNSILTTHTTLEHSD
Sbjct: 140 SFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSD 199
Query: 361 CAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL 540
CAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL
Sbjct: 200 CAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL 259
Query: 541 VPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 720
VPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY
Sbjct: 260 VPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 319
Query: 721 RGDVVPKDVNAAIATIKTKRTIQF 792
RGDVVPKDVNAAIATIKTKRTIQF
Sbjct: 320 RGDVVPKDVNAAIATIKTKRTIQF 343
>sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain
Length = 452
Score = 503 bits (1295), Expect = e-142
Identities = 246/264 (93%), Positives = 252/264 (95%)
Frame = +1
Query: 1 TGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFH 180
TGTYRQLFHPEQLITGKEDAANNYARGHYT+GKEI+DLVLDRIRKLADQCTGLQGFLIFH
Sbjct: 80 TGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEIIDLVLDRIRKLADQCTGLQGFLIFH 139
Query: 181 XXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSD 360
LLMERLSVDYGKKSKLEFA+YPAPQI+TAVVEPYNSILTTHTTLEHSD
Sbjct: 140 SFGGGTGSGFSSLLMERLSVDYGKKSKLEFAIYPAPQISTAVVEPYNSILTTHTTLEHSD 199
Query: 361 CAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL 540
CAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL
Sbjct: 200 CAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL 259
Query: 541 VPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 720
VPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPANQMVKCDPRHGKYM+CCMLY
Sbjct: 260 VPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMSCCMLY 319
Query: 721 RGDVVPKDVNAAIATIKTKRTIQF 792
RGDVVPKDVNAAIATIKTKRTIQF
Sbjct: 320 RGDVVPKDVNAAIATIKTKRTIQF 343
>sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin isotype
M-alpha-1)
sp|P68362|TBA2_CRIGR Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin II)
sp|Q71U36|TBA3_HUMAN Tubulin alpha-3 chain (Alpha-tubulin 3) (Tubulin B-alpha-1)
sp|P68370|TBA1_RAT Tubulin alpha-1 chain (Alpha-tubulin 1)
Length = 451
Score = 503 bits (1294), Expect = e-142
Identities = 245/264 (92%), Positives = 252/264 (95%)
Frame = +1
Query: 1 TGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFH 180
TGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DLVLDRIRKLADQCTGLQGFL+FH
Sbjct: 80 TGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFH 139
Query: 181 XXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSD 360
LLMERLSVDYGKKSKLEF++YPAPQ++TAVVEPYNSILTTHTTLEHSD
Sbjct: 140 SFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSD 199
Query: 361 CAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL 540
CAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL
Sbjct: 200 CAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL 259
Query: 541 VPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 720
VPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC+LY
Sbjct: 260 VPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLY 319
Query: 721 RGDVVPKDVNAAIATIKTKRTIQF 792
RGDVVPKDVNAAIATIKTKRTIQF
Sbjct: 320 RGDVVPKDVNAAIATIKTKRTIQF 343
>sp|P52273|TBA_BOMMO Tubulin alpha chain
Length = 450
Score = 501 bits (1291), Expect = e-142
Identities = 247/264 (93%), Positives = 250/264 (94%)
Frame = +1
Query: 1 TGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFH 180
TGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFH
Sbjct: 80 TGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFH 139
Query: 181 XXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSD 360
LLMERLSVDYGKKSKLEFA+YPAPQ++TAVVEPYNSILTTHTTLEHSD
Sbjct: 140 SFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSD 199
Query: 361 CAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL 540
CAFMVDNEAIYDICRRNLDIE PTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL
Sbjct: 200 CAFMVDNEAIYDICRRNLDIEPPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL 259
Query: 541 VPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 720
VPYPRIHFPL TYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY
Sbjct: 260 VPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 319
Query: 721 RGDVVPKDVNAAIATIKTKRTIQF 792
RGDVVPKDVNAAIATIKTKRTIQF
Sbjct: 320 RGDVVPKDVNAAIATIKTKRTIQF 343
>sp|P18258|TBA1_PARLI Tubulin alpha-1 chain
Length = 452
Score = 501 bits (1289), Expect = e-141
Identities = 244/264 (92%), Positives = 252/264 (95%)
Frame = +1
Query: 1 TGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFH 180
TGTYRQLFHPEQLITGKEDAANNYARGHYT+GKE++D+VLDRIRKLADQCTGLQGFLIFH
Sbjct: 80 TGTYRQLFHPEQLITGKEDAANNYARGHYTVGKELIDIVLDRIRKLADQCTGLQGFLIFH 139
Query: 181 XXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSD 360
LLMERLSVDYGKKSKLEFAVYPAPQI+TAVVEPYNSILTTHTTLEHSD
Sbjct: 140 SFGGGTGSGFSSLLMERLSVDYGKKSKLEFAVYPAPQISTAVVEPYNSILTTHTTLEHSD 199
Query: 361 CAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL 540
CAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL
Sbjct: 200 CAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL 259
Query: 541 VPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 720
VPYPRIHFPLATYAPVISAEKAYHEQL+V+EITNACFEPANQMVKCDPRHGKYMACC+LY
Sbjct: 260 VPYPRIHFPLATYAPVISAEKAYHEQLTVSEITNACFEPANQMVKCDPRHGKYMACCLLY 319
Query: 721 RGDVVPKDVNAAIATIKTKRTIQF 792
RGDVVPKDVNAAIATIKTKRTIQF
Sbjct: 320 RGDVVPKDVNAAIATIKTKRTIQF 343
>sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific
Length = 450
Score = 501 bits (1289), Expect = e-141
Identities = 245/264 (92%), Positives = 250/264 (94%)
Frame = +1
Query: 1 TGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFH 180
TGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDR+RKL+DQCTGLQGFLIFH
Sbjct: 80 TGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRVRKLSDQCTGLQGFLIFH 139
Query: 181 XXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSD 360
LLMERLSVDYGKKSKLEFA+YPAPQ++TAVVEPYNSILTTHTTLEHSD
Sbjct: 140 SFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSD 199
Query: 361 CAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL 540
CAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL
Sbjct: 200 CAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL 259
Query: 541 VPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 720
VPYPRIHFPL TYAPVISAEKAYHE LSVAEITNACFEPANQMVKCDPRHGKYMACCMLY
Sbjct: 260 VPYPRIHFPLVTYAPVISAEKAYHEMLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 319
Query: 721 RGDVVPKDVNAAIATIKTKRTIQF 792
RGDVVPKDVNAAIATIKTKRTIQF
Sbjct: 320 RGDVVPKDVNAAIATIKTKRTIQF 343
>sp|P06605|TBA3_DROME Tubulin alpha-3 chain
Length = 450
Score = 501 bits (1289), Expect = e-141
Identities = 248/264 (93%), Positives = 250/264 (94%)
Frame = +1
Query: 1 TGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFH 180
TGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFH
Sbjct: 80 TGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFH 139
Query: 181 XXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSD 360
LLMERLSVDYGKKSKLEFAVYPAPQ++TAVVEPYNSILTTHTTLEHSD
Sbjct: 140 SFGGGTGSGFTSLLMERLSVDYGKKSKLEFAVYPAPQVSTAVVEPYNSILTTHTTLEHSD 199
Query: 361 CAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL 540
CAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL
Sbjct: 200 CAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL 259
Query: 541 VPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 720
VPYPRIHFPL TYAPVISAEKAYHEQLSVAEITNACFEPANQMVK DPRHGKYMACCMLY
Sbjct: 260 VPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKVDPRHGKYMACCMLY 319
Query: 721 RGDVVPKDVNAAIATIKTKRTIQF 792
RGDVVPKDVNAAIATIKTKRTIQF
Sbjct: 320 RGDVVPKDVNAAIATIKTKRTIQF 343
>sp|Q9BQE3|TBA6_HUMAN Tubulin alpha-6 chain (Alpha-tubulin 6)
Length = 449
Score = 499 bits (1285), Expect = e-141
Identities = 243/264 (92%), Positives = 251/264 (95%)
Frame = +1
Query: 1 TGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFH 180
TGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DLVLDRIRKLADQCTGLQGFL+FH
Sbjct: 80 TGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFH 139
Query: 181 XXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSD 360
LLMERLSVDYGKKSKLEF++YPAPQ++TAVVEPYNSILTTHTTLEHSD
Sbjct: 140 SFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSD 199
Query: 361 CAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL 540
CAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITASLRFDGALNVDLTEFQTNL
Sbjct: 200 CAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNL 259
Query: 541 VPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 720
VPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPANQMVKCDPRHGKYMACC+LY
Sbjct: 260 VPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLY 319
Query: 721 RGDVVPKDVNAAIATIKTKRTIQF 792
RGDVVPKDVNAAIATIKTKRTIQF
Sbjct: 320 RGDVVPKDVNAAIATIKTKRTIQF 343
>sp|P68373|TBA6_MOUSE Tubulin alpha-6 chain (Alpha-tubulin 6) (Alpha-tubulin isotype
M-alpha-6)
sp|P68365|TBA3_CRIGR Tubulin alpha-3 chain (Alpha-tubulin 3) (Alpha-tubulin III)
Length = 449
Score = 499 bits (1285), Expect = e-141
Identities = 243/264 (92%), Positives = 251/264 (95%)
Frame = +1
Query: 1 TGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFH 180
TGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DLVLDRIRKLADQCTGLQGFL+FH
Sbjct: 80 TGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFH 139
Query: 181 XXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSD 360
LLMERLSVDYGKKSKLEF++YPAPQ++TAVVEPYNSILTTHTTLEHSD
Sbjct: 140 SFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSD 199
Query: 361 CAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL 540
CAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITASLRFDGALNVDLTEFQTNL
Sbjct: 200 CAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNL 259
Query: 541 VPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 720
VPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPANQMVKCDPRHGKYMACC+LY
Sbjct: 260 VPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLY 319
Query: 721 RGDVVPKDVNAAIATIKTKRTIQF 792
RGDVVPKDVNAAIATIKTKRTIQF
Sbjct: 320 RGDVVPKDVNAAIATIKTKRTIQF 343
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,907,326
Number of Sequences: 369166
Number of extensions: 1785605
Number of successful extensions: 4761
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4674
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7425705210
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)