Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_I23
(534 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P41931|DCOR_CAEEL Ornithine decarboxylase (ODC) 100 4e-21
sp|Q9I8S4|DCOR2_XENLA Ornithine decarboxylase 2 (ODC 2) (xO... 93 4e-19
sp|P11926|DCOR_HUMAN Ornithine decarboxylase (ODC) 88 1e-17
sp|P27120|DCOR1_XENLA Ornithine decarboxylase 1 (ODC 1) (xO... 88 1e-17
sp|P14019|DCOR_CRIGR Ornithine decarboxylase (ODC) 87 3e-17
sp|P27117|DCOR_BOVIN Ornithine decarboxylase (ODC) 87 3e-17
sp|P27119|DCOR_MUSPA Ornithine decarboxylase (ODC) 84 2e-16
sp|P00860|DCOR_MOUSE Ornithine decarboxylase (ODC) 84 2e-16
sp|P09057|DCOR_RAT Ornithine decarboxylase (ODC) 83 4e-16
sp|P27118|DCOR_CHICK Ornithine decarboxylase (ODC) 83 5e-16
>sp|P41931|DCOR_CAEEL Ornithine decarboxylase (ODC)
Length = 422
Score = 99.8 bits (247), Expect = 4e-21
Identities = 45/92 (48%), Positives = 62/92 (67%)
Frame = +3
Query: 258 EKGYRYVINDGVYNSFNCIVFDHAKPAPFGIFDNEGYFKEVACETETFVSTIYGPTCDGF 437
+ GY Y INDGVY SFNCI+FDHA P +FD + E F+STI+GPTCD
Sbjct: 311 DHGYMYYINDGVYGSFNCILFDHAHPIGSPLFDTD--------RNEKFMSTIWGPTCDSL 362
Query: 438 DCLIQQEPLPNMDVGYWIVWPNMGAYTIAASS 533
D + ++ +P M+VG W+ +P+MGAYT+AA++
Sbjct: 363 DLVEDKKLMPKMNVGEWLYYPDMGAYTLAAAT 394
>sp|Q9I8S4|DCOR2_XENLA Ornithine decarboxylase 2 (ODC 2) (xODC2)
Length = 456
Score = 93.2 bits (230), Expect = 4e-19
Identities = 43/91 (47%), Positives = 59/91 (64%)
Frame = +3
Query: 261 KGYRYVINDGVYNSFNCIVFDHAKPAPFGIFDNEGYFKEVACETETFVSTIYGPTCDGFD 440
K Y +NDGVY SFNC+VFDHA P P K+ + + + S+++GPTCDG D
Sbjct: 309 KSIMYYVNDGVYGSFNCLVFDHAHPKPI-------LHKKPSPDQPLYTSSLWGPTCDGLD 361
Query: 441 CLIQQEPLPNMDVGYWIVWPNMGAYTIAASS 533
+ ++ LP + VG W+++ NMGAYTIAASS
Sbjct: 362 QIAERVQLPELHVGDWLLFENMGAYTIAASS 392
>sp|P11926|DCOR_HUMAN Ornithine decarboxylase (ODC)
Length = 461
Score = 87.8 bits (216), Expect = 1e-17
Identities = 41/92 (44%), Positives = 60/92 (65%)
Frame = +3
Query: 258 EKGYRYVINDGVYNSFNCIVFDHAKPAPFGIFDNEGYFKEVACETETFVSTIYGPTCDGF 437
E+ + Y +NDGVY SFNCI++DHA P K + + + S+I+GPTCDG
Sbjct: 311 EQTFMYYVNDGVYGSFNCILYDHAHVKPL-------LQKRPKPDEKYYSSSIWGPTCDGL 363
Query: 438 DCLIQQEPLPNMDVGYWIVWPNMGAYTIAASS 533
D ++++ LP M VG W+++ NMGAYT+AA+S
Sbjct: 364 DRIVERCDLPEMHVGDWMLFENMGAYTVAAAS 395
>sp|P27120|DCOR1_XENLA Ornithine decarboxylase 1 (ODC 1) (xODC1)
Length = 460
Score = 87.8 bits (216), Expect = 1e-17
Identities = 41/92 (44%), Positives = 60/92 (65%)
Frame = +3
Query: 258 EKGYRYVINDGVYNSFNCIVFDHAKPAPFGIFDNEGYFKEVACETETFVSTIYGPTCDGF 437
+K Y +NDGVY SFNCI+FDHA P K+ + + + S+I+GPTCDG
Sbjct: 312 DKTLMYYVNDGVYGSFNCILFDHAHVKPV-------LTKKPKPDEKFYSSSIWGPTCDGL 364
Query: 438 DCLIQQEPLPNMDVGYWIVWPNMGAYTIAASS 533
D ++++ LP + VG W+++ NMGAYT+AA+S
Sbjct: 365 DRIVERFELPELQVGDWMLFENMGAYTVAAAS 396
>sp|P14019|DCOR_CRIGR Ornithine decarboxylase (ODC)
Length = 455
Score = 87.0 bits (214), Expect = 3e-17
Identities = 41/92 (44%), Positives = 60/92 (65%)
Frame = +3
Query: 258 EKGYRYVINDGVYNSFNCIVFDHAKPAPFGIFDNEGYFKEVACETETFVSTIYGPTCDGF 437
E+ + Y +NDGVY SFNCI++DHA P K + + + S+I+GPTCDG
Sbjct: 305 EQTFMYYVNDGVYGSFNCILYDHAHVKPL-------LPKRPKPDEKYYSSSIWGPTCDGL 357
Query: 438 DCLIQQEPLPNMDVGYWIVWPNMGAYTIAASS 533
D ++++ LP M VG W+++ NMGAYT+AA+S
Sbjct: 358 DRIVERCNLPEMHVGDWMLFENMGAYTVAAAS 389
>sp|P27117|DCOR_BOVIN Ornithine decarboxylase (ODC)
Length = 461
Score = 86.7 bits (213), Expect = 3e-17
Identities = 40/92 (43%), Positives = 60/92 (65%)
Frame = +3
Query: 258 EKGYRYVINDGVYNSFNCIVFDHAKPAPFGIFDNEGYFKEVACETETFVSTIYGPTCDGF 437
++ + Y +NDGVY SFNCI++DHA P K + + + S+I+GPTCDG
Sbjct: 311 DRTFMYYVNDGVYGSFNCILYDHAHVKPL-------LQKRPKPDEKYYSSSIWGPTCDGL 363
Query: 438 DCLIQQEPLPNMDVGYWIVWPNMGAYTIAASS 533
D ++++ LP M VG W+++ NMGAYT+AA+S
Sbjct: 364 DRIVERCNLPEMHVGDWMLFENMGAYTVAAAS 395
>sp|P27119|DCOR_MUSPA Ornithine decarboxylase (ODC)
Length = 461
Score = 84.3 bits (207), Expect = 2e-16
Identities = 40/92 (43%), Positives = 59/92 (64%)
Frame = +3
Query: 258 EKGYRYVINDGVYNSFNCIVFDHAKPAPFGIFDNEGYFKEVACETETFVSTIYGPTCDGF 437
E+ + Y +NDGVY SFNCI++DHA K + + + S+I+GPTCDG
Sbjct: 311 EQTFMYYVNDGVYGSFNCILYDHAHVKAL-------LQKRPKPDEKYYSSSIWGPTCDGL 363
Query: 438 DCLIQQEPLPNMDVGYWIVWPNMGAYTIAASS 533
D ++++ LP M VG W+++ NMGAYT+AA+S
Sbjct: 364 DRIVERCNLPEMHVGDWMLFENMGAYTVAAAS 395
>sp|P00860|DCOR_MOUSE Ornithine decarboxylase (ODC)
Length = 461
Score = 84.3 bits (207), Expect = 2e-16
Identities = 40/92 (43%), Positives = 59/92 (64%)
Frame = +3
Query: 258 EKGYRYVINDGVYNSFNCIVFDHAKPAPFGIFDNEGYFKEVACETETFVSTIYGPTCDGF 437
E+ + Y +NDGVY SFNCI++DHA K + + + S+I+GPTCDG
Sbjct: 311 EQTFMYYVNDGVYGSFNCILYDHAHVKAL-------LQKRPKPDEKYYSSSIWGPTCDGL 363
Query: 438 DCLIQQEPLPNMDVGYWIVWPNMGAYTIAASS 533
D ++++ LP M VG W+++ NMGAYT+AA+S
Sbjct: 364 DRIVERCNLPEMHVGDWMLFENMGAYTVAAAS 395
>sp|P09057|DCOR_RAT Ornithine decarboxylase (ODC)
Length = 461
Score = 83.2 bits (204), Expect = 4e-16
Identities = 40/92 (43%), Positives = 58/92 (63%)
Frame = +3
Query: 258 EKGYRYVINDGVYNSFNCIVFDHAKPAPFGIFDNEGYFKEVACETETFVSTIYGPTCDGF 437
E+ Y +NDGVY SFNCI++DHA K + + + S+I+GPTCDG
Sbjct: 311 EQTLMYYVNDGVYGSFNCILYDHAHVKAL-------LQKRPKPDEKYYSSSIWGPTCDGL 363
Query: 438 DCLIQQEPLPNMDVGYWIVWPNMGAYTIAASS 533
D ++++ LP M VG W+++ NMGAYT+AA+S
Sbjct: 364 DRIVERCSLPEMHVGDWMLFENMGAYTVAAAS 395
>sp|P27118|DCOR_CHICK Ornithine decarboxylase (ODC)
Length = 450
Score = 82.8 bits (203), Expect = 5e-16
Identities = 39/92 (42%), Positives = 57/92 (61%)
Frame = +3
Query: 258 EKGYRYVINDGVYNSFNCIVFDHAKPAPFGIFDNEGYFKEVACETETFVSTIYGPTCDGF 437
+K Y +NDGVY SFNCI++DHA P K + + +I+GPTCDG
Sbjct: 301 DKTLMYYVNDGVYGSFNCILYDHAHVKPV-------LQKRPKPDDGCYSCSIWGPTCDGL 353
Query: 438 DCLIQQEPLPNMDVGYWIVWPNMGAYTIAASS 533
D ++++ +P + VG WI++ NMGAYT+AA+S
Sbjct: 354 DRIVERCNMPELQVGDWILFENMGAYTVAAAS 385
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,221,197
Number of Sequences: 369166
Number of extensions: 1183938
Number of successful extensions: 2737
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2705
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3650218350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)