Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_I16
(845 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P39687|AN32A_HUMAN Acidic leucine-rich nuclear phosphopr... 50 8e-06
sp|P43537|YFG7_YEAST Hypothetical 16.5 kDa protein in COS4 ... 47 9e-05
sp|Q92688|AN32B_HUMAN Acidic leucine-rich nuclear phosphopr... 45 3e-04
sp||P51122_1 [Segment 1 of 2] Acidic leucine-rich nuclear p... 44 6e-04
sp|Q6A1I3|AN32B_SHEEP Acidic leucine-rich nuclear phosphopr... 44 7e-04
sp|Q6R5P0|TLR11_MOUSE Toll-like receptor 11 precursor 44 7e-04
sp|Q9HCI5|MAGE1_HUMAN Melanoma-associated antigen E1 (MAGE-... 43 0.001
sp|P49911|AN32A_RAT Acidic leucine-rich nuclear phosphoprot... 43 0.001
sp|O35381|AN32A_MOUSE Acidic leucine-rich nuclear phosphopr... 43 0.001
sp|P97347|RPTN_MOUSE Repetin 43 0.001
>sp|P39687|AN32A_HUMAN Acidic leucine-rich nuclear phosphoprotein 32 family member A
(Potent heat-stable protein phosphatase 2A inhibitor
I1PP2A) (Acidic nuclear phosphoprotein pp32) (Cerebellar
leucine-rich acidic nuclear protein) (HLA-DR-associated
protein I) (PHAPI)
Length = 249
Score = 50.1 bits (118), Expect = 8e-06
Identities = 39/121 (32%), Positives = 66/121 (54%), Gaps = 2/121 (1%)
Frame = +1
Query: 4 NLRDLPKFTKLTLAHNKIQTISDLEELIY-CDNISVLDLQHNLIDDPKVIDEIFSKMKSL 180
NL L K KL L+ N++ LE L C N++ L+L N I D I+ + K+++L
Sbjct: 59 NLPKLNKLKKLELSDNRVS--GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPL-KKLENL 115
Query: 181 RVLYLQGNQCIKNINNYRKYTINICKHLTYLDERPVFEKDRAFAEA-FYRGGIDEEKKER 357
+ L L + + N+N+YR+ + LTYLD +K+ ++A Y G+D+E+++
Sbjct: 116 KSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGYDRDDKEAPDSDAEGYVEGLDDEEEDE 174
Query: 358 D 360
D
Sbjct: 175 D 175
>sp|P43537|YFG7_YEAST Hypothetical 16.5 kDa protein in COS4 5'region
Length = 175
Score = 46.6 bits (109), Expect = 9e-05
Identities = 33/65 (50%), Positives = 34/65 (52%)
Frame = +1
Query: 577 TGESISTDVLPHSGESISADVLPHSGESISADVLPHSGESISADVLPHSGESISTDVLPH 756
+G SIS DV SG S DV SG ISA V SG S S DV SG S S DV
Sbjct: 24 SGSSISPDVDAGSGSRTSPDVDAGSGSRISAGVGTFSGSSTSPDVDAGSGSSTSPDVGAG 83
Query: 757 SGESI 771
SG SI
Sbjct: 84 SGSSI 88
Score = 41.2 bits (95), Expect = 0.004
Identities = 30/63 (47%), Positives = 31/63 (49%)
Frame = +1
Query: 580 GESISTDVLPHSGESISADVLPHSGESISADVLPHSGESISADVLPHSGESISTDVLPHS 759
G + T V SG SIS DV SG S DV SG ISA V SG S S DV S
Sbjct: 13 GVLLGTSVGAGSGSSISPDVDAGSGSRTSPDVDAGSGSRISAGVGTFSGSSTSPDVDAGS 72
Query: 760 GES 768
G S
Sbjct: 73 GSS 75
Score = 40.8 bits (94), Expect = 0.005
Identities = 30/65 (46%), Positives = 31/65 (47%)
Frame = +1
Query: 577 TGESISTDVLPHSGESISADVLPHSGESISADVLPHSGESISADVLPHSGESISTDVLPH 756
+G S DV SG ISA V SG S S DV SG S S DV SG SIS V
Sbjct: 36 SGSRTSPDVDAGSGSRISAGVGTFSGSSTSPDVDAGSGSSTSPDVGAGSGSSISAGVGSR 95
Query: 757 SGESI 771
G I
Sbjct: 96 IGTGI 100
Score = 32.7 bits (73), Expect = 1.3
Identities = 25/62 (40%), Positives = 27/62 (43%)
Frame = +1
Query: 583 ESISTDVLPHSGESISADVLPHSGESISADVLPHSGESISADVLPHSGESISTDVLPHSG 762
ESI + G + V SG SIS DV SG S DV SG IS V SG
Sbjct: 2 ESIILSIAIFIGVLLGTSVGAGSGSSISPDVDAGSGSRTSPDVDAGSGSRISAGVGTFSG 61
Query: 763 ES 768
S
Sbjct: 62 SS 63
>sp|Q92688|AN32B_HUMAN Acidic leucine-rich nuclear phosphoprotein 32 family member B
(PHAPI2 protein) (Silver-stainable protein SSP29)
(Acidic protein rich in leucines)
Length = 251
Score = 45.1 bits (105), Expect = 3e-04
Identities = 39/123 (31%), Positives = 66/123 (53%), Gaps = 4/123 (3%)
Frame = +1
Query: 4 NLRDLPKFTKLTLAHNKIQTISDL--EELIYCDNISVLDLQHNLIDDPKVIDEIFSKMKS 177
NL LPK KL L+ N+I D+ E+L N++ L+L N + D ++ + K++
Sbjct: 59 NLPKLPKLKKLELSENRIFGGLDMLAEKL---PNLTHLNLSGNKLKDISTLEPL-KKLEC 114
Query: 178 LRVLYLQGNQCIKNINNYRKYTINICKHLTYLD--ERPVFEKDRAFAEAFYRGGIDEEKK 351
L+ L L + + N+N+YR+ + LTYLD +R E + AE G+DEE++
Sbjct: 115 LKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDSDAEV---DGVDEEEE 170
Query: 352 ERD 360
+ +
Sbjct: 171 DEE 173
>sp||P51122_1 [Segment 1 of 2] Acidic leucine-rich nuclear phosphoprotein 32
family member A (Leucine-rich acidic nuclear protein)
Length = 162
Score = 43.9 bits (102), Expect = 6e-04
Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Frame = +1
Query: 4 NLRDLPKFTKLTLAHNKIQTISDLEELIY-CDNISVLDLQHNLIDDPKVIDEIFSKMKSL 180
NL L K KL L+ N+I LE L C N++ L+L+ N I D I+ + K+++L
Sbjct: 56 NLPKLNKLKKLELSDNRIS--GGLEVLAEKCPNLTHLNLRGNKIKDLSTIEPL-KKLENL 112
Query: 181 RVLYLQGNQCIKNINNYRKYTINICKHLTYLD 276
+ L L + + N+N+YR+ + LTYLD
Sbjct: 113 KSLDLFNCE-VTNLNDYRENVFKLLPQLTYLD 143
>sp|Q6A1I3|AN32B_SHEEP Acidic leucine-rich nuclear phosphoprotein 32 family member B
(Leucine-rich acidic nuclear protein) (LAN) (Acidic
protein rich in leucines)
Length = 261
Score = 43.5 bits (101), Expect = 7e-04
Identities = 41/131 (31%), Positives = 68/131 (51%), Gaps = 4/131 (3%)
Frame = +1
Query: 4 NLRDLPKFTKLTLAHNKIQTISDL--EELIYCDNISVLDLQHNLIDDPKVIDEIFSKMKS 177
NL LPK KL L+ N+I D+ E+L N++ L+L N + D ++ + K++
Sbjct: 59 NLPKLPKLKKLELSDNRICGGLDMLAEKL---PNLTHLNLSGNKLKDIGTLEPL-KKLEC 114
Query: 178 LRVLYLQGNQCIKNINNYRKYTINICKHLTYLD--ERPVFEKDRAFAEAFYRGGIDEEKK 351
L+ L L + + N+N+YR+ + LTYLD +R E + AE G+DEE+
Sbjct: 115 LKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDREDREAPDSDAEV---DGVDEEED 170
Query: 352 ERDRWVEAERE 384
+ + E + E
Sbjct: 171 DEEGENEDKEE 181
>sp|Q6R5P0|TLR11_MOUSE Toll-like receptor 11 precursor
Length = 926
Score = 43.5 bits (101), Expect = 7e-04
Identities = 30/90 (33%), Positives = 47/90 (52%)
Frame = +1
Query: 7 LRDLPKFTKLTLAHNKIQTISDLEELIYCDNISVLDLQHNLIDDPKVIDEIFSKMKSLRV 186
L LP+ KL L+ NK+ I +L E ++ N+ VLDL +N + D V S + L+
Sbjct: 332 LHTLPQLQKLNLSMNKLGPILELPEGLFSTNLKVLDLSYNQLCD--VPHGALSLLSQLQE 389
Query: 187 LYLQGNQCIKNINNYRKYTINICKHLTYLD 276
L+L GN NI++ ++ + L LD
Sbjct: 390 LWLSGN----NISSLSNESLQGLRQLRTLD 415
>sp|Q9HCI5|MAGE1_HUMAN Melanoma-associated antigen E1 (MAGE-E1 antigen) (Hepatocellular
carcinoma-associated protein 1)
Length = 957
Score = 43.1 bits (100), Expect = 0.001
Identities = 26/69 (37%), Positives = 34/69 (49%)
Frame = +1
Query: 559 TPVCEITGESISTDVLPHSGESISADVLPHSGESISADVLPHSGESISADVLPHSGESIS 738
TPV E ST V GE S VLP + + S ++P G+ S V P + E +S
Sbjct: 246 TPVPPTRDEGPSTSVPATPGEGPSTSVLPAASDGQSISLVPTRGKGSSTSVPPTATEGLS 305
Query: 739 TDVLPHSGE 765
T V P +GE
Sbjct: 306 TSVQPTAGE 314
Score = 39.7 bits (91), Expect = 0.011
Identities = 25/63 (39%), Positives = 30/63 (47%)
Frame = +1
Query: 577 TGESISTDVLPHSGESISADVLPHSGESISADVLPHSGESISADVLPHSGESISTDVLPH 756
+ E ST V P + E S + P GE S V P + E S V+P E ST VLP
Sbjct: 144 SSEEPSTSVPPTASEVPSTSLPPTPGEGTSTSVPPTAYEGPSTSVVPTPDEGPSTSVLPT 203
Query: 757 SGE 765
GE
Sbjct: 204 PGE 206
Score = 36.2 bits (82), Expect = 0.12
Identities = 29/77 (37%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Frame = +1
Query: 544 EVPKDTPVCEITGESISTDVLPHSGESISADVLPHSGESISADVLPHSGESISADVLPHS 723
EVP T + GE ST V P + E S V+P E S VLP GE V +
Sbjct: 158 EVPS-TSLPPTPGEGTSTSVPPTAYEGPSTSVVPTPDEGPSTSVLPTPGEGPGTSVPLAA 216
Query: 724 GESISTDV--LPHSGES 768
E +ST V P G S
Sbjct: 217 TEGLSTSVQATPDEGPS 233
Score = 35.8 bits (81), Expect = 0.15
Identities = 24/63 (38%), Positives = 27/63 (42%)
Frame = +1
Query: 559 TPVCEITGESISTDVLPHSGESISADVLPHSGESISADVLPHSGESISADVLPHSGESIS 738
T V E ST + P GE S V P + E S V+P E S VLP GE
Sbjct: 150 TSVPPTASEVPSTSLPPTPGEGTSTSVPPTAYEGPSTSVVPTPDEGPSTSVLPTPGEGPG 209
Query: 739 TDV 747
T V
Sbjct: 210 TSV 212
Score = 35.0 bits (79), Expect = 0.26
Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = +1
Query: 550 PKDTPVCE--ITGESISTDVLPHSGESISADVLPHSGESISADVLPHSGESISADVLPHS 723
P D+ + + E ST VLP S E S V P E+ SA P E VLP
Sbjct: 49 PSDSQILQGLCASEGPSTSVLPTSAEGPSTFVPPTISEASSASGQPTISEGPGTSVLPTP 108
Query: 724 GESISTDVLP 753
E +ST P
Sbjct: 109 SEGLSTSGPP 118
Score = 32.3 bits (72), Expect = 1.7
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Frame = +1
Query: 547 VPKDTPVCEITGESISTDVLPH--SGESISADVLPHSGESISADVLPHSGESISADVLPH 720
+P D P ++ + +L + E S VLP S E S V P E+ SA P
Sbjct: 36 LPADVPGSDVPQGPSDSQILQGLCASEGPSTSVLPTSAEGPSTFVPPTISEASSASGQPT 95
Query: 721 SGESISTDVLPHSGESI 771
E T VLP E +
Sbjct: 96 ISEGPGTSVLPTPSEGL 112
Score = 32.0 bits (71), Expect = 2.2
Identities = 22/63 (34%), Positives = 27/63 (42%)
Frame = +1
Query: 583 ESISTDVLPHSGESISADVLPHSGESISADVLPHSGESISADVLPHSGESISTDVLPHSG 762
E ST V+P E S VLP GE V + E +S V E ST V P +
Sbjct: 182 EGPSTSVVPTPDEGPSTSVLPTPGEGPGTSVPLAATEGLSTSVQATPDEGPSTSVPPTAT 241
Query: 763 ESI 771
E +
Sbjct: 242 EGL 244
>sp|P49911|AN32A_RAT Acidic leucine-rich nuclear phosphoprotein 32 family member A
(Leucine-rich acidic nuclear protein)
Length = 247
Score = 43.1 bits (100), Expect = 0.001
Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 3/122 (2%)
Frame = +1
Query: 4 NLRDLPKFTKLTLAHNKIQTISDLEELIY-CDNISVLDLQHNLIDDPKVIDEIFSKMKSL 180
NL L K KL L+ N+I DLE L C N+ L+L N I D I+ + K+++L
Sbjct: 59 NLPKLNKLKKLELSENRIS--GDLEVLAEKCPNLKHLNLSGNKIKDLSTIEPL-KKLENL 115
Query: 181 RVLYLQGNQCIKNINNYRKYTINICKHLTYLD--ERPVFEKDRAFAEAFYRGGIDEEKKE 354
+ L L + + N+N YR+ + + YLD +R E + E + +E++ E
Sbjct: 116 KSLDLFNCE-VTNLNAYRENVFKLLPQVMYLDGYDRDNKEAPDSDVEGYVEDDDEEDEDE 174
Query: 355 RD 360
+
Sbjct: 175 EE 176
>sp|O35381|AN32A_MOUSE Acidic leucine-rich nuclear phosphoprotein 32 family member A
(Potent heat-stable protein phosphatase 2A inhibitor
I1PP2A) (Acidic nuclear phosphoprotein pp32) (Cerebellar
leucine-rich acidic nuclear protein)
Length = 247
Score = 43.1 bits (100), Expect = 0.001
Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 3/122 (2%)
Frame = +1
Query: 4 NLRDLPKFTKLTLAHNKIQTISDLEELIY-CDNISVLDLQHNLIDDPKVIDEIFSKMKSL 180
NL L K KL L+ N+I DLE L C N+ L+L N I D I+ + K+++L
Sbjct: 59 NLPKLNKLKKLELSENRIS--GDLEVLAEKCPNLKHLNLSGNKIKDLSTIEPL-KKLENL 115
Query: 181 RVLYLQGNQCIKNINNYRKYTINICKHLTYLD--ERPVFEKDRAFAEAFYRGGIDEEKKE 354
+ L L + + N+N YR+ + + YLD +R E + E + +E++ E
Sbjct: 116 KSLDLFNCE-VTNLNAYRENVFKLLPQVMYLDGYDRDNKEAPDSDVEGYVEDDDEEDEDE 174
Query: 355 RD 360
+
Sbjct: 175 EE 176
>sp|P97347|RPTN_MOUSE Repetin
Length = 1130
Score = 43.1 bits (100), Expect = 0.001
Identities = 21/62 (33%), Positives = 27/62 (43%)
Frame = +1
Query: 580 GESISTDVLPHSGESISADVLPHSGESISADVLPHSGESISADVLPHSGESISTDVLPHS 759
G+ D PH G+ D PH G+ D PH G+ D PH G+ D PH
Sbjct: 356 GQKGRQDQSPHQGQKGRQDQSPHRGQKGRQDQSPHQGQKGRQDQSPHLGQKGRQDQSPHQ 415
Query: 760 GE 765
G+
Sbjct: 416 GQ 417
Score = 43.1 bits (100), Expect = 0.001
Identities = 21/62 (33%), Positives = 27/62 (43%)
Frame = +1
Query: 580 GESISTDVLPHSGESISADVLPHSGESISADVLPHSGESISADVLPHSGESISTDVLPHS 759
G+ D PH G+ D PH G+ D PH G+ D PH G+ D PH
Sbjct: 368 GQKGRQDQSPHRGQKGRQDQSPHQGQKGRQDQSPHLGQKGRQDQSPHQGQKGRQDQSPHQ 427
Query: 760 GE 765
G+
Sbjct: 428 GQ 429
Score = 42.7 bits (99), Expect = 0.001
Identities = 21/62 (33%), Positives = 27/62 (43%)
Frame = +1
Query: 580 GESISTDVLPHSGESISADVLPHSGESISADVLPHSGESISADVLPHSGESISTDVLPHS 759
G+ D PH G+ D PH G+ D PH G+ D PH G+ D PH
Sbjct: 332 GQKGRKDQSPHLGQKGRQDQSPHRGQKGRQDQSPHQGQKGRQDQSPHRGQKGRQDQSPHQ 391
Query: 760 GE 765
G+
Sbjct: 392 GQ 393
Score = 42.7 bits (99), Expect = 0.001
Identities = 21/62 (33%), Positives = 27/62 (43%)
Frame = +1
Query: 580 GESISTDVLPHSGESISADVLPHSGESISADVLPHSGESISADVLPHSGESISTDVLPHS 759
G+ D PH G+ D PH G+ D PH G+ D PH G+ D PH
Sbjct: 344 GQKGRQDQSPHRGQKGRQDQSPHQGQKGRQDQSPHRGQKGRQDQSPHQGQKGRQDQSPHL 403
Query: 760 GE 765
G+
Sbjct: 404 GQ 405
Score = 42.0 bits (97), Expect = 0.002
Identities = 20/62 (32%), Positives = 28/62 (45%)
Frame = +1
Query: 580 GESISTDVLPHSGESISADVLPHSGESISADVLPHSGESISADVLPHSGESISTDVLPHS 759
G+ D+ H G+ D+ PH G+ D PH G+ D PH G+ D PH
Sbjct: 656 GQKGRQDLSSHQGQKGRQDLSPHQGQKGRQDQSPHLGQKGRHDQSPHQGQKGRHDQSPHQ 715
Query: 760 GE 765
G+
Sbjct: 716 GQ 717
Score = 42.0 bits (97), Expect = 0.002
Identities = 20/62 (32%), Positives = 28/62 (45%)
Frame = +1
Query: 580 GESISTDVLPHSGESISADVLPHSGESISADVLPHSGESISADVLPHSGESISTDVLPHS 759
G+ D+ PH G+ D PH G+ D PH G+ D PH G+ D+ H
Sbjct: 668 GQKGRQDLSPHQGQKGRQDQSPHLGQKGRHDQSPHQGQKGRHDQSPHQGQKGRQDLSSHQ 727
Query: 760 GE 765
G+
Sbjct: 728 GQ 729
Score = 40.4 bits (93), Expect = 0.006
Identities = 20/62 (32%), Positives = 26/62 (41%)
Frame = +1
Query: 580 GESISTDVLPHSGESISADVLPHSGESISADVLPHSGESISADVLPHSGESISTDVLPHS 759
G+ D PH G+ D PH G+ D PH G+ D PH G+ D H
Sbjct: 380 GQKGRQDQSPHQGQKGRQDQSPHLGQKGRQDQSPHQGQKGRQDQSPHQGQKGRQDQSSHQ 439
Query: 760 GE 765
G+
Sbjct: 440 GQ 441
Score = 40.4 bits (93), Expect = 0.006
Identities = 20/62 (32%), Positives = 27/62 (43%)
Frame = +1
Query: 580 GESISTDVLPHSGESISADVLPHSGESISADVLPHSGESISADVLPHSGESISTDVLPHS 759
G+ D PH G+ D+ H G+ D PH G+ D PH G+ D PH
Sbjct: 704 GQKGRHDQSPHQGQKGRQDLSSHQGQKGRQDQSPHLGQKGRHDQSPHRGQKGRQDQSPHQ 763
Query: 760 GE 765
G+
Sbjct: 764 GQ 765
Score = 40.0 bits (92), Expect = 0.008
Identities = 20/62 (32%), Positives = 27/62 (43%)
Frame = +1
Query: 580 GESISTDVLPHSGESISADVLPHSGESISADVLPHSGESISADVLPHSGESISTDVLPHS 759
G+ D PH G+ D PH G+ D PH G+ D+ H G+ D PH
Sbjct: 680 GQKGRQDQSPHLGQKGRHDQSPHQGQKGRHDQSPHQGQKGRQDLSSHQGQKGRQDQSPHL 739
Query: 760 GE 765
G+
Sbjct: 740 GQ 741
Score = 40.0 bits (92), Expect = 0.008
Identities = 20/62 (32%), Positives = 27/62 (43%)
Frame = +1
Query: 580 GESISTDVLPHSGESISADVLPHSGESISADVLPHSGESISADVLPHSGESISTDVLPHS 759
G+ D PH G+ D PH G+ D+ H G+ D PH G+ D PH
Sbjct: 692 GQKGRHDQSPHQGQKGRHDQSPHQGQKGRQDLSSHQGQKGRQDQSPHLGQKGRHDQSPHR 751
Query: 760 GE 765
G+
Sbjct: 752 GQ 753
Score = 38.1 bits (87), Expect = 0.031
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +1
Query: 610 HSGESISADVLPHSGESISADVLPHSGESISADVLPHSGESISTDVLPHSGE 765
H G+ D+ H G+ D+ PH G+ D PH G+ D PH G+
Sbjct: 654 HQGQKGRQDLSSHQGQKGRQDLSPHQGQKGRQDQSPHLGQKGRHDQSPHQGQ 705
Score = 37.7 bits (86), Expect = 0.040
Identities = 19/62 (30%), Positives = 26/62 (41%)
Frame = +1
Query: 580 GESISTDVLPHSGESISADVLPHSGESISADVLPHSGESISADVLPHSGESISTDVLPHS 759
G+ D+ H G+ D PH G+ D PH G+ D PH G+ D H
Sbjct: 716 GQKGRQDLSSHQGQKGRQDQSPHLGQKGRHDQSPHRGQKGRQDQSPHQGQKGRQDQSSHQ 775
Query: 760 GE 765
G+
Sbjct: 776 GQ 777
Score = 37.4 bits (85), Expect = 0.053
Identities = 19/62 (30%), Positives = 25/62 (40%)
Frame = +1
Query: 580 GESISTDVLPHSGESISADVLPHSGESISADVLPHSGESISADVLPHSGESISTDVLPHS 759
G+ D PH G+ D PH G+ D PH G+ D H G+ D H
Sbjct: 392 GQKGRQDQSPHLGQKGRQDQSPHQGQKGRQDQSPHQGQKGRQDQSSHQGQKGRQDQSSHQ 451
Query: 760 GE 765
G+
Sbjct: 452 GQ 453
Score = 35.0 bits (79), Expect = 0.26
Identities = 18/62 (29%), Positives = 24/62 (38%)
Frame = +1
Query: 580 GESISTDVLPHSGESISADVLPHSGESISADVLPHSGESISADVLPHSGESISTDVLPHS 759
G+ D PH G+ D PH G+ D H G+ D H G+ D H
Sbjct: 404 GQKGRQDQSPHQGQKGRQDQSPHQGQKGRQDQSSHQGQKGRQDQSSHQGQKGRQDQSSHQ 463
Query: 760 GE 765
G+
Sbjct: 464 GQ 465
Score = 32.0 bits (71), Expect = 2.2
Identities = 17/62 (27%), Positives = 23/62 (37%)
Frame = +1
Query: 580 GESISTDVLPHSGESISADVLPHSGESISADVLPHSGESISADVLPHSGESISTDVLPHS 759
G+ D PH G+ D H G+ D H G+ D H G+ D H
Sbjct: 416 GQKGRQDQSPHQGQKGRQDQSSHQGQKGRQDQSSHQGQKGRQDQSSHQGQKGRQDQSSHQ 475
Query: 760 GE 765
G+
Sbjct: 476 GQ 477
Score = 30.8 bits (68), Expect = 4.9
Identities = 16/52 (30%), Positives = 21/52 (40%)
Frame = +1
Query: 610 HSGESISADVLPHSGESISADVLPHSGESISADVLPHSGESISTDVLPHSGE 765
H G+ D G+ D PH G+ D PH G+ D PH G+
Sbjct: 318 HYGQKGRKDQSFQQGQKGRKDQSPHLGQKGRQDQSPHRGQKGRQDQSPHQGQ 369
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.317 0.135 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,537,272
Number of Sequences: 369166
Number of extensions: 1623206
Number of successful extensions: 6675
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6392
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8293644780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)