Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_I10
(858 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P53590|SUCB2_PIG Succinyl-CoA ligase [GDP-forming] beta-... 259 5e-69
sp|Q96I99|SUCB2_HUMAN Succinyl-CoA ligase [GDP-forming] bet... 256 6e-68
sp|Q9Z2I8|SUCB2_MOUSE Succinyl-CoA ligase [GDP-forming] bet... 255 1e-67
sp|P53589|SUCB2_CAEEL Probable succinyl-CoA ligase [GDP-for... 220 3e-57
sp|Q9P567|SUCB_NEUCR Probable succinyl-CoA ligase [GDP-form... 188 2e-47
sp|Q9Z2I9|SUCB1_MOUSE Succinyl-CoA ligase [ADP-forming] bet... 185 2e-46
sp|O97580|SUCB1_PIG Succinyl-CoA ligase [ADP-forming] beta-... 181 3e-45
sp|Q9P2R7|SUCB1_HUMAN Succinyl-CoA ligase [ADP-forming] bet... 178 1e-44
sp|P53312|SUCB_YEAST Succinyl-CoA ligase [GDP-forming] beta... 167 3e-41
sp|P53587|SUCB_NEOFR Succinyl-CoA ligase [GDP-forming] beta... 166 6e-41
>sp|P53590|SUCB2_PIG Succinyl-CoA ligase [GDP-forming] beta-chain, mitochondrial
precursor (Succinyl-CoA synthetase, betaG chain)
(SCS-betaG) (GTP-specific succinyl-CoA synthetase beta
subunit)
Length = 433
Score = 259 bits (663), Expect = 5e-69
Identities = 134/224 (59%), Positives = 166/224 (74%)
Frame = +1
Query: 58 RNLNLQEYQSKGLMSKFGVNIQKFKVASTEQDAIDISKTFKVKEYVIKAQILAGGRGKGT 237
R LNLQEYQSK LMS GV +Q+F VA T +A++ +K KE V+KAQILAGGRGKG
Sbjct: 37 RWLNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRLNAKEIVLKAQILAGGRGKGV 96
Query: 238 FSNGFKGGVHLTKNPSDVPNLVKSMLGQRLVTKQTSKDGVMVHKVMVAEALDIDRETYLA 417
FS+G KGGVHLTK+P V L K M+G L TKQT K+GV V+KVMVAEALDI RETYLA
Sbjct: 97 FSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLA 156
Query: 418 ILMDRTSGGLVVVSSPQGGMDIEEVAIKNPAAILKTKVDINKGITKSQCDEIAQHLLFTS 597
ILMDR+ G V+V SPQGG+DIEEVA NP I K ++DI +GI SQ +A++L F
Sbjct: 157 ILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLG 216
Query: 598 KQQIDEVGKQLRGLFDLFLQHDCTQIEINPFGVTPDGQIVCFDA 729
Q ++ Q++ L++LFL+ D TQ+E+NPFG TP+GQ+VCFDA
Sbjct: 217 PLQ-NQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDA 259
Score = 35.0 bits (79), Expect = 0.27
Identities = 17/41 (41%), Positives = 27/41 (65%)
Frame = +3
Query: 720 F*RQLNFDDNAAFRQREIFSLHDPVAEEQDPRKSKQLKMAL 842
F ++NFDDNA FRQ++IF++ D E +P +++ K L
Sbjct: 257 FDAKINFDDNAEFRQKDIFAMDD--KSENEPIENEAAKYDL 295
>sp|Q96I99|SUCB2_HUMAN Succinyl-CoA ligase [GDP-forming] beta-chain, mitochondrial
precursor (Succinyl-CoA synthetase, betaG chain)
(SCS-betaG) (GTP-specific succinyl-CoA synthetase beta
subunit)
Length = 432
Score = 256 bits (654), Expect = 6e-68
Identities = 132/224 (58%), Positives = 165/224 (73%)
Frame = +1
Query: 58 RNLNLQEYQSKGLMSKFGVNIQKFKVASTEQDAIDISKTFKVKEYVIKAQILAGGRGKGT 237
R LNLQEYQSK LMS GV +Q+F VA T +A++ +K KE V+KAQILAGGRGKG
Sbjct: 36 RWLNLQEYQSKKLMSDNGVRVQRFFVADTANEALEAAKRLNAKEIVLKAQILAGGRGKGV 95
Query: 238 FSNGFKGGVHLTKNPSDVPNLVKSMLGQRLVTKQTSKDGVMVHKVMVAEALDIDRETYLA 417
F++G KGGVHLTK+P+ V L K M+G L TKQT K+GV V+KVMVAEALDI RETYLA
Sbjct: 96 FNSGLKGGVHLTKDPNVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLA 155
Query: 418 ILMDRTSGGLVVVSSPQGGMDIEEVAIKNPAAILKTKVDINKGITKSQCDEIAQHLLFTS 597
ILMDR+ G V+V SPQGG+DIEEVA NP I K ++DI +GI SQ +A++L F
Sbjct: 156 ILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIFEGIKDSQAQRMAENLGFVG 215
Query: 598 KQQIDEVGKQLRGLFDLFLQHDCTQIEINPFGVTPDGQIVCFDA 729
+ + Q+ L++LFL+ D TQ+E+NPFG TP+GQ+VCFDA
Sbjct: 216 PLK-SQAADQITKLYNLFLKIDATQVEVNPFGETPEGQVVCFDA 258
Score = 35.0 bits (79), Expect = 0.27
Identities = 17/41 (41%), Positives = 27/41 (65%)
Frame = +3
Query: 720 F*RQLNFDDNAAFRQREIFSLHDPVAEEQDPRKSKQLKMAL 842
F ++NFDDNA FRQ++IF++ D E +P +++ K L
Sbjct: 256 FDAKINFDDNAEFRQKDIFAMDD--KSENEPIENEAAKYDL 294
>sp|Q9Z2I8|SUCB2_MOUSE Succinyl-CoA ligase [GDP-forming] beta-chain, mitochondrial
precursor (Succinyl-CoA synthetase, betaG chain)
(SCS-betaG) (GTP-specific succinyl-CoA synthetase beta
subunit)
Length = 404
Score = 255 bits (651), Expect = 1e-67
Identities = 130/224 (58%), Positives = 167/224 (74%)
Frame = +1
Query: 58 RNLNLQEYQSKGLMSKFGVNIQKFKVASTEQDAIDISKTFKVKEYVIKAQILAGGRGKGT 237
R LNLQEYQSK LMS+ GV +Q+F VA+T ++A++ +K KE V+KAQILAGGRGKG
Sbjct: 8 RWLNLQEYQSKKLMSEHGVRVQRFFVANTAKEALEAAKRLNAKEIVLKAQILAGGRGKGV 67
Query: 238 FSNGFKGGVHLTKNPSDVPNLVKSMLGQRLVTKQTSKDGVMVHKVMVAEALDIDRETYLA 417
F++G KGGVHLTK+P V L + M+G L TKQT K+GV V+KVMVAEALDI RETYLA
Sbjct: 68 FNSGLKGGVHLTKDPKVVGELAQQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLA 127
Query: 418 ILMDRTSGGLVVVSSPQGGMDIEEVAIKNPAAILKTKVDINKGITKSQCDEIAQHLLFTS 597
ILMDR+ G V+V SPQGG+DIEEVA +P I K ++DI +GI SQ +A++L F
Sbjct: 128 ILMDRSHNGPVIVGSPQGGVDIEEVAASSPELIFKEQIDIFEGIKDSQAQRMAENLGFLG 187
Query: 598 KQQIDEVGKQLRGLFDLFLQHDCTQIEINPFGVTPDGQIVCFDA 729
+ ++ Q+ L+ LFL+ D TQ+E+NPFG TP+GQ+VCFDA
Sbjct: 188 SLK-NQAADQITKLYHLFLKIDATQVEVNPFGETPEGQVVCFDA 230
Score = 33.9 bits (76), Expect = 0.60
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +3
Query: 720 F*RQLNFDDNAAFRQREIFSLHDPVAEE 803
F ++NFDDNA FRQ++IF++ D E
Sbjct: 228 FDAKINFDDNAEFRQKDIFAMDDKSENE 255
>sp|P53589|SUCB2_CAEEL Probable succinyl-CoA ligase [GDP-forming] beta-chain,
mitochondrial precursor (Succinyl-CoA synthetase, beta
chain) (SCS-beta)
Length = 415
Score = 220 bits (561), Expect = 3e-57
Identities = 120/228 (52%), Positives = 154/228 (67%), Gaps = 2/228 (0%)
Frame = +1
Query: 52 QTRNLNLQEYQSKGLMSKFGVNIQKFKVASTEQDAIDISKTFKVKEYVIKAQILAGGRGK 231
Q R LNLQE+QSK ++ K G ++Q F VAS ++A + +F EYV+KAQILAGGRGK
Sbjct: 16 QRRFLNLQEFQSKEILEKHGCSVQNFVVASNRKEAEEKWMSFGDHEYVVKAQILAGGRGK 75
Query: 232 GTFSNGFKG--GVHLTKNPSDVPNLVKSMLGQRLVTKQTSKDGVMVHKVMVAEALDIDRE 405
G F NG KG GV +TK + M+G+RLVTKQT+ +GV V KVM+AE +DI RE
Sbjct: 76 GKFINGTKGIGGVFITKEKDAALEAIDEMIGKRLVTKQTTSEGVRVDKVMIAEGVDIKRE 135
Query: 406 TYLAILMDRTSGGLVVVSSPQGGMDIEEVAIKNPAAILKTKVDINKGITKSQCDEIAQHL 585
TYLA+LMDR S G VVV+SP GGMDIE VA K P I KT +DI G+T+ Q +IA+ L
Sbjct: 136 TYLAVLMDRESNGPVVVASPDGGMDIEAVAEKTPERIFKTPIDIQMGMTEGQSLKIAKDL 195
Query: 586 LFTSKQQIDEVGKQLRGLFDLFLQHDCTQIEINPFGVTPDGQIVCFDA 729
F K I ++++ L+DLF+ D TQ+EINP T DG++ C DA
Sbjct: 196 QFEGK-LIGVAAQEIKRLYDLFIAVDATQVEINPLVETADGRVFCVDA 242
Score = 35.4 bits (80), Expect = 0.20
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = +3
Query: 729 QLNFDDNAAFRQREIFSLHDPVAEEQDPRK 818
++NFDD+AA+RQ+EIF+ EE DPR+
Sbjct: 243 KMNFDDSAAYRQKEIFAYE--TFEEHDpre 270
>sp|Q9P567|SUCB_NEUCR Probable succinyl-CoA ligase [GDP-forming] beta-chain,
mitochondrial precursor (Succinyl-CoA synthetase, beta
chain) (SCS-beta)
Length = 447
Score = 188 bits (477), Expect = 2e-47
Identities = 102/227 (44%), Positives = 142/227 (62%)
Frame = +1
Query: 49 KQTRNLNLQEYQSKGLMSKFGVNIQKFKVASTEQDAIDISKTFKVKEYVIKAQILAGGRG 228
+Q R L++ EY S L+ ++G+ + K VA T +A I+K ++ VIKAQ+LAGGRG
Sbjct: 32 QQRRALSIHEYLSADLLRQYGIGVPKGDVARTGAEAEAIAKQIGGEDMVIKAQVLAGGRG 91
Query: 229 KGTFSNGFKGGVHLTKNPSDVPNLVKSMLGQRLVTKQTSKDGVMVHKVMVAEALDIDRET 408
KGTF NG KGGV + +P++ + M+G +L+TKQT G + V + E RE
Sbjct: 92 KGTFDNGLKGGVRVIYSPTEAKMFAEQMIGHKLITKQTGAQGRLCSAVYICERKFARREF 151
Query: 409 YLAILMDRTSGGLVVVSSPQGGMDIEEVAIKNPAAILKTKVDINKGITKSQCDEIAQHLL 588
YLA+LMDR S G V+VSS QGGMDIE VA +NP AI T +DIN G+T +IA L
Sbjct: 152 YLAVLMDRASQGPVIVSSSQGGMDIEGVAKENPEAIHTTYIDINVGVTDEMARDIATKLG 211
Query: 589 FTSKQQIDEVGKQLRGLFDLFLQHDCTQIEINPFGVTPDGQIVCFDA 729
F S+Q ++E ++ L+ +F + D TQIEINP T D +++ DA
Sbjct: 212 F-SEQCVEEAKDTIQKLYKIFCEKDATQIEINPLSETSDHKVMAMDA 257
Score = 34.3 bits (77), Expect = 0.46
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 729 QLNFDDNAAFRQREIFSLHDPVAEEQDPRKSKQLKMALI 845
+ FDDNA FRQ +IF L D E+ D ++ Q + I
Sbjct: 258 KFGFDDNADFRQPDIFKLRDTTQEDPDEVRAAQAGLNFI 296
>sp|Q9Z2I9|SUCB1_MOUSE Succinyl-CoA ligase [ADP-forming] beta-chain, mitochondrial
precursor (Succinyl-CoA synthetase, betaA chain)
(SCS-betaA) (ATP-specific succinyl-CoA synthetase beta
subunit)
Length = 463
Score = 185 bits (469), Expect = 2e-46
Identities = 98/227 (43%), Positives = 147/227 (64%)
Frame = +1
Query: 49 KQTRNLNLQEYQSKGLMSKFGVNIQKFKVASTEQDAIDISKTFKVKEYVIKAQILAGGRG 228
+Q R L+L EY S L+ + GV++ K VA + +A I+K K+ VIKAQ+LAGGRG
Sbjct: 48 QQQRTLSLHEYLSMELLQEAGVSVPKGFVAKSSDEAYAIAKKLGSKDVVIKAQVLAGGRG 107
Query: 229 KGTFSNGFKGGVHLTKNPSDVPNLVKSMLGQRLVTKQTSKDGVMVHKVMVAEALDIDRET 408
KGTF++G KGGV + +P + + M+GQ+L+TKQT + G + ++V+V E RE
Sbjct: 108 KGTFTSGLKGGVKIVFSPEEAKAVSSQMIGQKLITKQTGEKGRICNQVLVCERKYPRREY 167
Query: 409 YLAILMDRTSGGLVVVSSPQGGMDIEEVAIKNPAAILKTKVDINKGITKSQCDEIAQHLL 588
Y AI M+R+ G V++ S QGG++IE+VA +NP AI+K +DI +GI K Q +AQ +
Sbjct: 168 YFAITMERSFQGPVLIGSAQGGVNIEDVAAENPEAIVKEPIDIVEGIKKEQAVTLAQKMG 227
Query: 589 FTSKQQIDEVGKQLRGLFDLFLQHDCTQIEINPFGVTPDGQIVCFDA 729
F S +D + + L++LFL++D T +EINP DG+++C DA
Sbjct: 228 FPS-NIVDSAAENMIKLYNLFLKYDATMVEINPMVEDSDGKVLCMDA 273
Score = 32.0 bits (71), Expect = 2.3
Identities = 12/31 (38%), Positives = 23/31 (74%)
Frame = +3
Query: 729 QLNFDDNAAFRQREIFSLHDPVAEEQDPRKS 821
++NFD N+A+RQ++IF L D E++ +++
Sbjct: 274 KINFDSNSAYRQKKIFDLQDWSQEDERDKEA 304
>sp|O97580|SUCB1_PIG Succinyl-CoA ligase [ADP-forming] beta-chain, mitochondrial
precursor (Succinyl-CoA synthetase, betaA chain)
(SCS-betaA) (ATP-specific succinyl-CoA synthetase beta
subunit)
Length = 425
Score = 181 bits (458), Expect = 3e-45
Identities = 97/227 (42%), Positives = 143/227 (62%)
Frame = +1
Query: 49 KQTRNLNLQEYQSKGLMSKFGVNIQKFKVASTEQDAIDISKTFKVKEYVIKAQILAGGRG 228
+Q RNL+L EY S L+ + GV+I K VA + +A I+K K+ VIKAQ+LAGGRG
Sbjct: 10 QQQRNLSLHEYMSMELLQEAGVSIPKGHVAKSPDEAYAIAKKLGSKDVVIKAQVLAGGRG 69
Query: 229 KGTFSNGFKGGVHLTKNPSDVPNLVKSMLGQRLVTKQTSKDGVMVHKVMVAEALDIDRET 408
KGTF +G KGGV + +P + + M+G++L TKQT + G + ++V+V E RE
Sbjct: 70 KGTFESGLKGGVKIVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERRYPRREY 129
Query: 409 YLAILMDRTSGGLVVVSSPQGGMDIEEVAIKNPAAILKTKVDINKGITKSQCDEIAQHLL 588
Y AI M+R+ G V++ S QGG++IE+VA + P AI+K +DI +GI K Q +AQ +
Sbjct: 130 YFAITMERSFQGPVLIGSSQGGVNIEDVAAETPEAIVKEPIDIVEGIKKEQAVRLAQKMG 189
Query: 589 FTSKQQIDEVGKQLRGLFDLFLQHDCTQIEINPFGVTPDGQIVCFDA 729
F +D + + L++LFL++D T +EINP DG ++C DA
Sbjct: 190 F-PPSIVDSAAENMIKLYNLFLKYDATMVEINPMVEDSDGAVLCMDA 235
Score = 32.7 bits (73), Expect = 1.3
Identities = 13/39 (33%), Positives = 25/39 (64%)
Frame = +3
Query: 729 QLNFDDNAAFRQREIFSLHDPVAEEQDPRKSKQLKMALI 845
++NFD N+A+RQ++IF L D E++ + + + + I
Sbjct: 236 KINFDSNSAYRQKKIFDLQDWTQEDERDKDAAKANLNYI 274
>sp|Q9P2R7|SUCB1_HUMAN Succinyl-CoA ligase [ADP-forming] beta-chain, mitochondrial
precursor (Succinyl-CoA synthetase, betaA chain)
(SCS-betaA) (ATP-specific succinyl-CoA synthetase beta
subunit)
Length = 463
Score = 178 bits (452), Expect = 1e-44
Identities = 95/227 (41%), Positives = 142/227 (62%)
Frame = +1
Query: 49 KQTRNLNLQEYQSKGLMSKFGVNIQKFKVASTEQDAIDISKTFKVKEYVIKAQILAGGRG 228
+Q RNL+L EY S L+ + GV++ K VA + +A I+K K+ VIKAQ+LAGGRG
Sbjct: 48 QQQRNLSLHEYMSMELLQEAGVSVPKGYVAKSPDEAYAIAKKLGSKDVVIKAQVLAGGRG 107
Query: 229 KGTFSNGFKGGVHLTKNPSDVPNLVKSMLGQRLVTKQTSKDGVMVHKVMVAEALDIDRET 408
KGTF +G KGGV + +P + + M+G++L TKQT + G + ++V+V E RE
Sbjct: 108 KGTFESGLKGGVKIVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERKYPRREY 167
Query: 409 YLAILMDRTSGGLVVVSSPQGGMDIEEVAIKNPAAILKTKVDINKGITKSQCDEIAQHLL 588
Y AI M+R+ G V++ S GG++IE+VA + P AI+K +DI +GI K Q ++AQ +
Sbjct: 168 YFAITMERSFQGPVLIGSSHGGVNIEDVAAETPEAIIKEPIDIEEGIKKEQALQLAQKMG 227
Query: 589 FTSKQQIDEVGKQLRGLFDLFLQHDCTQIEINPFGVTPDGQIVCFDA 729
F ++ + + L+ LFL++D T IEINP DG ++C DA
Sbjct: 228 F-PPNIVESAAENMVKLYSLFLKYDATMIEINPMVEDSDGAVLCMDA 273
Score = 32.7 bits (73), Expect = 1.3
Identities = 13/39 (33%), Positives = 25/39 (64%)
Frame = +3
Query: 729 QLNFDDNAAFRQREIFSLHDPVAEEQDPRKSKQLKMALI 845
++NFD N+A+RQ++IF L D E++ + + + + I
Sbjct: 274 KINFDSNSAYRQKKIFDLQDWTQEDERDKDAAKANLNYI 312
>sp|P53312|SUCB_YEAST Succinyl-CoA ligase [GDP-forming] beta-chain, mitochondrial
precursor (Succinyl-CoA synthetase, beta chain)
(SCS-beta)
Length = 427
Score = 167 bits (423), Expect = 3e-41
Identities = 87/227 (38%), Positives = 136/227 (59%), Gaps = 3/227 (1%)
Frame = +1
Query: 58 RNLNLQEYQSKGLMSKFGVNIQKFKVASTEQDAIDISKTFKVKEYVIKAQILAGGRGKGT 237
R+L++ EY+S L+ ++G+ + A T ++A + +K + VIKAQ L GGRGKG
Sbjct: 29 RHLSIHEYRSAQLLREYGIGTPEGFPAFTPEEAFEAAKKLNTNKLVIKAQALTGGRGKGH 88
Query: 238 FSNGFKGGVHLTKNPSDVPNLVKSMLGQRLVTKQTSKDGVMVHKVMVAEALDIDRETYLA 417
F G+K GVH+ ++P ++ K ML L+TKQT G V V + + +D E YL+
Sbjct: 89 FDTGYKSGVHMIESPQQAEDVAKEMLNHNLITKQTGIAGKPVSAVYIVKRVDTKHEAYLS 148
Query: 418 ILMDRTSGGLVVVSSPQGGMDIEEVAIKNPAAILKTKVDINKGITKSQCDEIAQHLLFTS 597
ILMDR + ++++S QGGM+IEEVA + P AI K ++ +KG++ ++A+ L F+
Sbjct: 149 ILMDRQTKKPMIIASSQGGMNIEEVAERTPDAIKKFSIETSKGLSPQMAKDVAKSLGFSP 208
Query: 598 KQQIDEVGKQLRGLFDLFLQHDCTQIEINPFGV---TPDGQIVCFDA 729
Q DE K + L+ +F++ D TQ+EINP P +I+C DA
Sbjct: 209 DAQ-DEAAKAVSNLYKIFMERDATQVEINPLSEIEHDPTHKIMCTDA 254
Score = 34.3 bits (77), Expect = 0.46
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +3
Query: 729 QLNFDDNAAFRQREIFSLHDPVAEEQDPRKSKQLKMALI 845
+ FDDNA+FRQ +I+S D E+ D K+K+ + +
Sbjct: 255 KFGFDDNASFRQEKIYSWRDLSQEDPDEVKAKKYDLNFV 293
>sp|P53587|SUCB_NEOFR Succinyl-CoA ligase [GDP-forming] beta-chain, hydrogenosomal
precursor (Succinyl-CoA synthetase, beta chain)
(SCS-beta)
Length = 437
Score = 166 bits (421), Expect = 6e-41
Identities = 94/235 (40%), Positives = 133/235 (56%)
Frame = +1
Query: 25 SLLSFPLWKQTRNLNLQEYQSKGLMSKFGVNIQKFKVASTEQDAIDISKTFKVKEYVIKA 204
+L S Q R L++ EY S L+ ++ VN K VA T ++A +K ++ VIKA
Sbjct: 15 ALASIAQTAQKRFLSVHEYCSMNLLHEYNVNAPKGIVAKTPEEAYQAAKKLNTEDLVIKA 74
Query: 205 QILAGGRGKGTFSNGFKGGVHLTKNPSDVPNLVKSMLGQRLVTKQTSKDGVMVHKVMVAE 384
Q+LAGGRGKG F +G +GGV L P V + MLG +L+TKQT G + V V E
Sbjct: 75 QVLAGGRGKGHFDSGLQGGVKLCYTPEQVKDYASKMLGHKLITKQTGAAGRDCNAVYVVE 134
Query: 385 ALDIDRETYLAILMDRTSGGLVVVSSPQGGMDIEEVAIKNPAAILKTKVDINKGITKSQC 564
RE Y AIL+DR + G V+V+S +GG++IEEVA NP AIL I G+T+
Sbjct: 135 RQYAAREYYFAILLDRATRGPVLVASSEGGVEIEEVAKTNPDAILTVPFSIKTGLTREVA 194
Query: 565 DEIAQHLLFTSKQQIDEVGKQLRGLFDLFLQHDCTQIEINPFGVTPDGQIVCFDA 729
+ A+ + FT K + + L+ +F++ D T +EINP G++VC DA
Sbjct: 195 LDTAKKMGFTEK-CVPQAADTFMKLYKIFIEKDATMVEINPMAENNRGEVVCMDA 248
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,141,144
Number of Sequences: 369166
Number of extensions: 1917295
Number of successful extensions: 5223
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5086
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8486520240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)