Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_I08
(613 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-t... 335 7e-92
sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain 333 2e-91
sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific 333 3e-91
sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1... 333 3e-91
sp|P06603|TBA1_DROME Tubulin alpha-1 chain 333 3e-91
sp|P52273|TBA_BOMMO Tubulin alpha chain 333 3e-91
sp|P02552|TBA1_CHICK Tubulin alpha-1 chain 333 3e-91
sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain 332 4e-91
sp|P68373|TBA6_MOUSE Tubulin alpha-6 chain (Alpha-tubulin 6... 332 6e-91
sp|P02550|TBA_PIG Tubulin alpha chain 332 6e-91
>sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-tubulin 3/7) (Alpha-tubulin
isotype M-alpha-3/7)
sp|Q68FR8|TBA3_RAT Tubulin alpha-3 chain (Alpha-tubulin 3)
sp|Q13748|TBA2_HUMAN Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 450
Score = 335 bits (858), Expect = 7e-92
Identities = 159/161 (98%), Positives = 160/161 (99%)
Frame = +3
Query: 3 KAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKR 182
KAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKR
Sbjct: 280 KAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKR 339
Query: 183 TIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 362
TIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY
Sbjct: 340 TIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 399
Query: 363 SKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADSV 485
+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG DSV
Sbjct: 400 AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSV 440
>sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain
Length = 451
Score = 333 bits (855), Expect = 2e-91
Identities = 158/161 (98%), Positives = 160/161 (99%)
Frame = +3
Query: 3 KAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKR 182
KAYHEQLSVAEITNACFEPANQ+VKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKR
Sbjct: 280 KAYHEQLSVAEITNACFEPANQLVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKR 339
Query: 183 TIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 362
TIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY
Sbjct: 340 TIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 399
Query: 363 SKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADSV 485
+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG DSV
Sbjct: 400 AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSV 440
>sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific
Length = 450
Score = 333 bits (853), Expect = 3e-91
Identities = 158/161 (98%), Positives = 159/161 (98%)
Frame = +3
Query: 3 KAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKR 182
KAYHE LSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKR
Sbjct: 280 KAYHEMLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKR 339
Query: 183 TIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 362
TIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY
Sbjct: 340 TIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 399
Query: 363 SKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADSV 485
+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG DSV
Sbjct: 400 AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSV 440
>sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin isotype
M-alpha-1)
sp|P68362|TBA2_CRIGR Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin II)
sp|Q71U36|TBA3_HUMAN Tubulin alpha-3 chain (Alpha-tubulin 3) (Tubulin B-alpha-1)
sp|P68370|TBA1_RAT Tubulin alpha-1 chain (Alpha-tubulin 1)
Length = 451
Score = 333 bits (853), Expect = 3e-91
Identities = 157/161 (97%), Positives = 160/161 (99%)
Frame = +3
Query: 3 KAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKR 182
KAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATIKTKR
Sbjct: 280 KAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKR 339
Query: 183 TIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 362
TIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY
Sbjct: 340 TIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 399
Query: 363 SKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADSV 485
+KRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG DSV
Sbjct: 400 AKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSV 440
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain
Length = 450
Score = 333 bits (853), Expect = 3e-91
Identities = 158/160 (98%), Positives = 159/160 (99%)
Frame = +3
Query: 3 KAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKR 182
KAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKR
Sbjct: 280 KAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKR 339
Query: 183 TIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 362
TIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY
Sbjct: 340 TIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 399
Query: 363 SKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADS 482
+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG DS
Sbjct: 400 AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDS 439
>sp|P52273|TBA_BOMMO Tubulin alpha chain
Length = 450
Score = 333 bits (853), Expect = 3e-91
Identities = 158/160 (98%), Positives = 159/160 (99%)
Frame = +3
Query: 3 KAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKR 182
KAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKR
Sbjct: 280 KAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKR 339
Query: 183 TIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 362
TIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY
Sbjct: 340 TIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 399
Query: 363 SKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADS 482
+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG DS
Sbjct: 400 AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDS 439
>sp|P02552|TBA1_CHICK Tubulin alpha-1 chain
Length = 412
Score = 333 bits (853), Expect = 3e-91
Identities = 157/161 (97%), Positives = 160/161 (99%)
Frame = +3
Query: 3 KAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKR 182
KAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATIKTKR
Sbjct: 241 KAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKR 300
Query: 183 TIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 362
TIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY
Sbjct: 301 TIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 360
Query: 363 SKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADSV 485
+KRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG DSV
Sbjct: 361 AKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSV 401
>sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain
Length = 452
Score = 332 bits (852), Expect = 4e-91
Identities = 157/161 (97%), Positives = 160/161 (99%)
Frame = +3
Query: 3 KAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKR 182
KAYHEQL+VAEITNACFEPANQMVKCDPRHGKYM+CCMLYRGDVVPKDVNAAIATIKTKR
Sbjct: 280 KAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMSCCMLYRGDVVPKDVNAAIATIKTKR 339
Query: 183 TIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 362
TIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY
Sbjct: 340 TIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 399
Query: 363 SKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADSV 485
+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG DSV
Sbjct: 400 AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSV 440
>sp|P68373|TBA6_MOUSE Tubulin alpha-6 chain (Alpha-tubulin 6) (Alpha-tubulin isotype
M-alpha-6)
sp|P68365|TBA3_CRIGR Tubulin alpha-3 chain (Alpha-tubulin 3) (Alpha-tubulin III)
Length = 449
Score = 332 bits (850), Expect = 6e-91
Identities = 156/160 (97%), Positives = 160/160 (100%)
Frame = +3
Query: 3 KAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKR 182
KAYHEQL+VAEITNACFEPANQMVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATIKTKR
Sbjct: 280 KAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKR 339
Query: 183 TIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 362
TIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY
Sbjct: 340 TIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 399
Query: 363 SKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADS 482
+KRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVGADS
Sbjct: 400 AKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGADS 439
>sp|P02550|TBA_PIG Tubulin alpha chain
Length = 451
Score = 332 bits (850), Expect = 6e-91
Identities = 156/161 (96%), Positives = 160/161 (99%)
Frame = +3
Query: 3 KAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKR 182
KAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATIKTKR
Sbjct: 280 KAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKR 339
Query: 183 TIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 362
TIQFVDWCPTGFKVGINY+PPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY
Sbjct: 340 TIQFVDWCPTGFKVGINYEPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 399
Query: 363 SKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADSV 485
+KRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG DSV
Sbjct: 400 AKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSV 440
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,601,350
Number of Sequences: 369166
Number of extensions: 1198392
Number of successful extensions: 3998
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3801
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4797864890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)