Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_I07
(775 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q964E0|ACTC_BIOTE Actin, cytoplasmic 431 e-121
sp|Q964E1|ACTC_BIOOB Actin, cytoplasmic 431 e-121
sp|P53458|ACT5_DIPDE Actin-5 431 e-120
sp|Q964D9|ACTC_HELTI Actin, cytoplasmic 431 e-120
sp|Q964E2|ACTC_BIOPF Actin, cytoplasmic 431 e-120
sp|Q964E3|ACTC_BIOAL Actin, cytoplasmic 431 e-120
sp|P92176|ACT2_LUMTE Actin-2 430 e-120
sp|P12716|ACTC_PISOC Actin, cytoplasmic 430 e-120
sp|P53470|ACT1_SCHMA Actin-1 429 e-120
sp|P92179|ACTC_BIOGL Actin, cytoplasmic 429 e-120
>sp|Q964E0|ACTC_BIOTE Actin, cytoplasmic
Length = 376
Score = 431 bits (1109), Expect = e-121
Identities = 209/227 (92%), Positives = 220/227 (96%)
Frame = -2
Query: 774 TSSLLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREI 595
T +LDSGDGVTHTVPIYEGYALPHAI+RLDLAGRDLTDYLMKILTERGYSFTTTAEREI
Sbjct: 150 TGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFTTTAEREI 209
Query: 594 VRDIKEKLCYIALDFDAEMRTASASSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLG 415
VRDIKEKLCY+ALDF+ EM+TAS SSSLEKSYELPDGQVITIGNERFRCPEA+FQPSFLG
Sbjct: 210 VRDIKEKLCYVALDFEQEMQTASTSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLG 269
Query: 414 LESVGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMYPGIADRMQKEISALAPPTMKIK 235
+E+ GIHETTYNSIMKCDVDIRKDLYAN VLSGGSTM+PGIADRMQKEI+ALAPPTMKIK
Sbjct: 270 MEAAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEITALAPPTMKIK 329
Query: 234 IVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 94
I+APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 330 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|Q964E1|ACTC_BIOOB Actin, cytoplasmic
Length = 376
Score = 431 bits (1109), Expect = e-121
Identities = 209/227 (92%), Positives = 221/227 (97%)
Frame = -2
Query: 774 TSSLLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREI 595
T +LDSGDGVTHTVPIYEGYALPHAI+RLDLAGRDLTDYLMKILTERGYSFTTTAEREI
Sbjct: 150 TGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFTTTAEREI 209
Query: 594 VRDIKEKLCYIALDFDAEMRTASASSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLG 415
VRDIKEKLCY+ALDF+ EM+TA++SSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLG
Sbjct: 210 VRDIKEKLCYVALDFEQEMQTATSSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLG 269
Query: 414 LESVGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMYPGIADRMQKEISALAPPTMKIK 235
+E+ GIHETTYNSIMKCDVDIRKDLYAN VLSGGSTM+PGIADRMQKEI+ALAPPTMKIK
Sbjct: 270 MEAAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEITALAPPTMKIK 329
Query: 234 IVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 94
I+APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 330 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|P53458|ACT5_DIPDE Actin-5
Length = 371
Score = 431 bits (1107), Expect = e-120
Identities = 211/227 (92%), Positives = 219/227 (96%)
Frame = -2
Query: 774 TSSLLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREI 595
T +LDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREI
Sbjct: 145 TGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREI 204
Query: 594 VRDIKEKLCYIALDFDAEMRTASASSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLG 415
VRDIKEKLCY+ALDF+ EM A++SS+LEKSYELPDGQVITIGNERFRCPEALFQPSFLG
Sbjct: 205 VRDIKEKLCYVALDFEQEMSNAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLG 264
Query: 414 LESVGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMYPGIADRMQKEISALAPPTMKIK 235
+ES GIHETTYNSIMKCDVDIRKDLYAN VLSGGSTMYPGI+DRMQKEISALAP TMKIK
Sbjct: 265 MESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMYPGISDRMQKEISALAPSTMKIK 324
Query: 234 IVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 94
IVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF
Sbjct: 325 IVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 371
>sp|Q964D9|ACTC_HELTI Actin, cytoplasmic
Length = 376
Score = 431 bits (1107), Expect = e-120
Identities = 208/227 (91%), Positives = 220/227 (96%)
Frame = -2
Query: 774 TSSLLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREI 595
T ++DSGDGVTHTVPIYEGYALPHAI+RLDLAGRDLTDYLMKILTERGYSFTTTAEREI
Sbjct: 150 TGIVIDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFTTTAEREI 209
Query: 594 VRDIKEKLCYIALDFDAEMRTASASSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLG 415
VRDIKEKLCY+ALDF+ EM+TAS SSSLEKSYELPDGQVITIGNERFRCPEA++QPSFLG
Sbjct: 210 VRDIKEKLCYVALDFEQEMQTASTSSSLEKSYELPDGQVITIGNERFRCPEAMYQPSFLG 269
Query: 414 LESVGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMYPGIADRMQKEISALAPPTMKIK 235
+ES GIHETTYNSIMKCDVDIRKDLYAN VLSGGSTM+PGIADRMQKEI+ALAPPTMKIK
Sbjct: 270 MESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEITALAPPTMKIK 329
Query: 234 IVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 94
I+APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 330 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|Q964E2|ACTC_BIOPF Actin, cytoplasmic
Length = 376
Score = 431 bits (1107), Expect = e-120
Identities = 209/227 (92%), Positives = 219/227 (96%)
Frame = -2
Query: 774 TSSLLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREI 595
T +LDSGDGVTHTVPIYEGYALPHAI+RLDLAGRDLTDYLMKILTERGYSFTTTAEREI
Sbjct: 150 TGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFTTTAEREI 209
Query: 594 VRDIKEKLCYIALDFDAEMRTASASSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLG 415
VRDIKEKLCY+ALDF+ EM TA+ SSSLEKSYELPDGQVITIGNERFRCPEA+FQPSFLG
Sbjct: 210 VRDIKEKLCYVALDFEQEMHTAATSSSLEKSYELPDGQVITIGNERFRCPEAVFQPSFLG 269
Query: 414 LESVGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMYPGIADRMQKEISALAPPTMKIK 235
+ES GIHETTYNSIMKCDVDIRKDLYAN VLSGGSTM+PGIADRMQKEI+ALAPPTMKIK
Sbjct: 270 MESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEITALAPPTMKIK 329
Query: 234 IVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 94
I+APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 330 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|Q964E3|ACTC_BIOAL Actin, cytoplasmic
Length = 376
Score = 431 bits (1107), Expect = e-120
Identities = 208/227 (91%), Positives = 220/227 (96%)
Frame = -2
Query: 774 TSSLLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREI 595
T ++DSGDGVTHTVPIYEGYALPHAI+RLDLAGRDLTDYLMKILTERGYSFTTTAEREI
Sbjct: 150 TGIVMDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFTTTAEREI 209
Query: 594 VRDIKEKLCYIALDFDAEMRTASASSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLG 415
VRDIKEKLCY+ALDF+ EM+TAS SSSLEKSYELPDGQVITIGNERFRCPEA+FQPSFLG
Sbjct: 210 VRDIKEKLCYVALDFEQEMQTASTSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLG 269
Query: 414 LESVGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMYPGIADRMQKEISALAPPTMKIK 235
+E+ GIHETTYNSIMKCDVDIRKDLYAN VLSGGSTM+PGIADRMQKEI+ALAPPTMKIK
Sbjct: 270 MEAAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEITALAPPTMKIK 329
Query: 234 IVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 94
I+APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 330 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|P92176|ACT2_LUMTE Actin-2
Length = 376
Score = 430 bits (1105), Expect = e-120
Identities = 210/227 (92%), Positives = 219/227 (96%)
Frame = -2
Query: 774 TSSLLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREI 595
T +LDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREI
Sbjct: 150 TGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREI 209
Query: 594 VRDIKEKLCYIALDFDAEMRTASASSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLG 415
VRDIKEKLCY+ALDF+ EM TASASSSLEKSYELPDGQVITIGNERFRCPEA+F SFLG
Sbjct: 210 VRDIKEKLCYVALDFEQEMNTASASSSLEKSYELPDGQVITIGNERFRCPEAMFHASFLG 269
Query: 414 LESVGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMYPGIADRMQKEISALAPPTMKIK 235
+ESVGIHETTYNSIMKCDVDIRKDLYAN VLSGG+TM+PGIADRMQKEI+ALAPPTMKIK
Sbjct: 270 MESVGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMFPGIADRMQKEITALAPPTMKIK 329
Query: 234 IVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 94
I+APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 330 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|P12716|ACTC_PISOC Actin, cytoplasmic
Length = 376
Score = 430 bits (1105), Expect = e-120
Identities = 208/227 (91%), Positives = 220/227 (96%)
Frame = -2
Query: 774 TSSLLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREI 595
T + DSGDGV+HTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREI
Sbjct: 150 TGIVFDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREI 209
Query: 594 VRDIKEKLCYIALDFDAEMRTASASSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLG 415
VRDIKEKLCY+ALDF+ EM+TA++SSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLG
Sbjct: 210 VRDIKEKLCYVALDFEQEMQTAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLG 269
Query: 414 LESVGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMYPGIADRMQKEISALAPPTMKIK 235
+ES GIHETTYNSIMKCDVDIRKDLYAN VLSGGSTM+PGIADRMQKE++ALAPPTMKIK
Sbjct: 270 MESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEVTALAPPTMKIK 329
Query: 234 IVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 94
I+APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 330 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|P53470|ACT1_SCHMA Actin-1
Length = 376
Score = 429 bits (1104), Expect = e-120
Identities = 210/227 (92%), Positives = 220/227 (96%)
Frame = -2
Query: 774 TSSLLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREI 595
T +LDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDY+MKILTERGYSFTTTAEREI
Sbjct: 150 TGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTTAEREI 209
Query: 594 VRDIKEKLCYIALDFDAEMRTASASSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLG 415
VRDIKEKLCY+ALDF+ EM TA++SS+LEKSYELPDGQVITIGNERFRCPEALFQPSFLG
Sbjct: 210 VRDIKEKLCYVALDFEQEMGTAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLG 269
Query: 414 LESVGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMYPGIADRMQKEISALAPPTMKIK 235
+E+ GIHETTYNSIMKCDVDIRKDLY+N VLSGGSTMYPGIADRMQKEISALAP TMKIK
Sbjct: 270 MEASGIHETTYNSIMKCDVDIRKDLYSNTVLSGGSTMYPGIADRMQKEISALAPSTMKIK 329
Query: 234 IVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 94
IVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF
Sbjct: 330 IVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 376
>sp|P92179|ACTC_BIOGL Actin, cytoplasmic
Length = 376
Score = 429 bits (1104), Expect = e-120
Identities = 208/227 (91%), Positives = 219/227 (96%)
Frame = -2
Query: 774 TSSLLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREI 595
T ++DSGDGVTHTVPIYEGYALPHAI+RLDLAGRDLTDYLMKILTERGYSFTTTAEREI
Sbjct: 150 TGIVMDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFTTTAEREI 209
Query: 594 VRDIKEKLCYIALDFDAEMRTASASSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLG 415
VRDIKEKLCY+ALDF+ EM+TAS SSSLEKSYELPDGQVITIGNERFRCPEA FQPSFLG
Sbjct: 210 VRDIKEKLCYVALDFEQEMQTASTSSSLEKSYELPDGQVITIGNERFRCPEATFQPSFLG 269
Query: 414 LESVGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMYPGIADRMQKEISALAPPTMKIK 235
+E+ GIHETTYNSIMKCDVDIRKDLYAN VLSGGSTM+PGIADRMQKEI+ALAPPTMKIK
Sbjct: 270 MEAAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEITALAPPTMKIK 329
Query: 234 IVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 94
I+APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 330 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,427,353
Number of Sequences: 369166
Number of extensions: 1787495
Number of successful extensions: 5245
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5095
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7212136400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)