Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_I06
(485 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P14586|HRP3_PLAFS Histidine-rich protein 40 0.004
sp|P04929|HRPX_PLALO Histidine-rich glycoprotein precursor 39 0.008
sp|P40349|URB1_USTMA Siderophore biosynthesis regulatory pr... 34 0.16
sp|Q9NBW1|FRIZ4_DROME Frizzled 4 precursor (Frizzled-4) (dFz4) 32 0.78
sp|Q64733|FOXB2_MOUSE Forkhead box protein B2 (Transcriptio... 31 1.3
sp|P04196|HRG_HUMAN Histidine-rich glycoprotein precursor (... 31 1.7
sp|Q9W349|LOZEN_DROME Lozenge protein 31 1.7
sp|Q9WV48|SHAN1_RAT SH3 and multiple ankyrin repeat domains... 30 2.3
sp|P21748|SALA_DROOR Protein spalt-accessory precursor 30 2.3
sp|P06719|KNOB_PLAFN Knob-associated histidine-rich protein... 30 3.0
>sp|P14586|HRP3_PLAFS Histidine-rich protein
Length = 82
Score = 39.7 bits (91), Expect = 0.004
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = -3
Query: 309 NHRLGHVFYLHHTL---LYHPFYHHLRNLHDHFVYHRHHI 199
NHR H F+ HH L LYH +HH + H H +HRH I
Sbjct: 3 NHRYHHYFHRHHHLNHHLYHRHHHHRHHHHRH--HHRHQI 40
Score = 35.4 bits (80), Expect = 0.070
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -3
Query: 330 HRLFYISNHRLGHVFYLHHTLLYHPFYHHLRNLHDHFVYH--RHHIH 196
H F+ +H H+++ HH H +HH R+ H H + H RH IH
Sbjct: 7 HHYFHRHHHLNHHLYHRHH----HHRHHHHRHHHRHQILHQNRHQIH 49
>sp|P04929|HRPX_PLALO Histidine-rich glycoprotein precursor
Length = 351
Score = 38.5 bits (88), Expect = 0.008
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -3
Query: 336 HLHRLFYISNHRLGHVFYLHHTLLYHPFYHHLRNLHDHFVYHRHHIHPDH 187
H H L Y +H H + HH +H +HH + H H + HH H H
Sbjct: 162 HHHHLGYHHHHAPHHHHHHHHAPHHHHHHHHAPHHHHHHHHAPHHHHHHH 211
Score = 37.0 bits (84), Expect = 0.024
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -3
Query: 309 NHRLGHVFYLHHTLLYHPFYHHLRNLHDHFVYHRHHIHPDHFVG 178
+H H + HH +H +HH + H H +H HH H H G
Sbjct: 200 HHHAPHHHHHHHHAPHHHHHHHHGHHHHHHHHHGHHHHHHHHHG 243
Score = 37.0 bits (84), Expect = 0.024
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = -3
Query: 336 HLHRLFYISNHRLGHVFYLHHTLLYHPFYHHLRNLHDHFVYHRHHIHPD 190
H H + +H H + HH +H HH + H H +H HH H D
Sbjct: 215 HHHHHHHHGHHHHHHHHHGHHHHHHHHHGHHHHHHHHHDAHHHHHHHHD 263
Score = 36.6 bits (83), Expect = 0.032
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = -3
Query: 336 HLHRLFYISNHRLGHVFYLHHTLLYHPFYHHLRNLHDHFVYHR--HHIHPDH 187
H H + +H GH + HH +H +HH + H H +H HH H H
Sbjct: 220 HHHGHHHHHHHHHGHHHHHHHHHGHHHHHHHHHDAHHHHHHHHDAHHHHHHH 271
Score = 36.2 bits (82), Expect = 0.041
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -3
Query: 309 NHRLGHVFYLHHTLLYHPFYHHLRNLHDHFVYHRHHIHPDH 187
+H LGH + HH +H HH + H H H HH H +H
Sbjct: 112 HHHLGHHHHHHHAAHHH---HHEEHHHHHHAAHHHH-HEEH 148
Score = 36.2 bits (82), Expect = 0.041
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Frame = -3
Query: 336 HLHRLFYISNHRLGHVFYLHHTLLYHPFY--HHLRNLHDHFVYHRHHIH--PDH 187
H H + +H H + HH +HP++ HHL H H +H HH H P H
Sbjct: 135 HHHHAAHHHHHEEHH--HHHHAAHHHPWFHHHHLGYHHHHAPHHHHHHHHAPHH 186
Score = 36.2 bits (82), Expect = 0.041
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -3
Query: 309 NHRLGHVFYLHHTLLYHPFYHHLRNLHDHFVYHRHHIHPDHFVG 178
+H H + HH +H +HH H H +H HH H H G
Sbjct: 190 HHHAPHHHHHHHHAPHHHHHHHHAPHHHHHHHHGHHHHHHHHHG 233
Score = 36.2 bits (82), Expect = 0.041
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = -3
Query: 336 HLHRLFYISNHRLGHVFYLHHTLLYHPFYHHLRNLHDHFVYHRHHIHPDH 187
H H + +H GH + HH +H +HH + H H +H HH H
Sbjct: 210 HHHAPHHHHHHHHGHHHHHHH---HHGHHHHHHHHHGHHHHHHHHHDAHH 256
Score = 35.8 bits (81), Expect = 0.054
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -3
Query: 336 HLHRLFYISNHRLGHVFYLHHTLLYHPFYHHLRNLHDHFVYHRHHIHPDH 187
H H + +H H + HH L +H +HH + H H +H HH H H
Sbjct: 93 HHHHHPHPHHHHHHHPPHHHHHLGHHHHHHHAAHHHHHEEHHHHH-HAAH 141
Score = 35.0 bits (79), Expect = 0.092
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = -3
Query: 336 HLHRLFYISNHRLGHVFYLHHTLLYHPFYHHLRNLHDHFVYHRHHIHPD 190
H H + +H GH + HH +H +HH + H H +H HH H D
Sbjct: 230 HHHGHHHHHHHHHGHHHHHHH---HHDAHHH--HHHHHDAHHHHHHHHD 273
Score = 35.0 bits (79), Expect = 0.092
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -3
Query: 336 HLHRLFYISNHRLGHVFYLHHTLLYHPFYHHLRNLHDHFVYHRHHIHPDH 187
H H + +H H + HH +H +HH + H H + HH H H
Sbjct: 242 HGHHHHHHHHHDAHHHHHHHHDAHHHHHHHHDAHHHHHHHHDAHHHHHHH 291
Score = 34.3 bits (77), Expect = 0.16
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -3
Query: 336 HLHRLFYISNHRLGHVFYLHHTLLYHPFYHHLRNLHDHFVYHRHHIHPDH 187
H H + +H H + HH +H +HH + H H + HH H H
Sbjct: 232 HGHHHHHHHHHGHHHHHHHHHDAHHHHHHHHDAHHHHHHHHDAHHHHHHH 281
Score = 34.3 bits (77), Expect = 0.16
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -3
Query: 336 HLHRLFYISNHRLGHVFYLHHTLLYHPFYHHLRNLHDHFVYHRHHIHPDH 187
H H + ++H H HH +H +HH + HD +H HH H
Sbjct: 286 HHHHHHHDAHHHHHHHHDAHHHHHHHDAHHHHHHHHDAHHHHHHHHDAHH 335
Score = 33.5 bits (75), Expect = 0.27
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -3
Query: 336 HLHRLFYISNHRLGHVFYLHHTLLYHPFYHHLRNLHDHFVYHRHHIHPDH 187
H H + +H H HH +H +HH + H +H HH H H
Sbjct: 196 HHHHHHHAPHHHHHHHHAPHHHHHHHHGHHHHHHHHHGHHHHHHHHHGHH 245
Score = 33.1 bits (74), Expect = 0.35
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = -3
Query: 336 HLHRLFYISNHRLGHVFYLHHTLLYHPFYHHLRNLHDHFVYHRHHIHPDH 187
H H + ++H H HH +H HH + H H +H HH H H
Sbjct: 266 HHHHHHHDAHHHHHHHHDAHHHHHHHHDAHHHHH-HHHDAHHHHHHHDAH 314
Score = 33.1 bits (74), Expect = 0.35
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -3
Query: 336 HLHRLFYISNHRLGHVFYLHHTLLYHPFYHHLRNLHDHFVYHRHHIHPDH 187
H H + ++H H HH +H +HH + HD +H HH H
Sbjct: 296 HHHHHHHDAHHHHHHHDAHHHHHHHHDAHHHHHHHHDAHHHHHHHHDAHH 345
Score = 33.1 bits (74), Expect = 0.35
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -3
Query: 336 HLHRLFYISNHRLGHVFYLHHTLLYHPFYHHLRNLHDHFVYHRHHIHPDH 187
H H + +H H + HH +H +HH H H +H H H H
Sbjct: 300 HHHDAHHHHHHHDAHHHHHHHHDAHHHHHHHHDAHHHHHHHHDAHHHHHH 349
Score = 32.7 bits (73), Expect = 0.46
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = -3
Query: 309 NHRLGHVFYLHHTLLYHPFYHHLRNLHDHFVYHRHHIHPDHFVG 178
+H H + HH +H +HH H H +H H H H G
Sbjct: 180 HHHAPHHHHHHHHAPHHHHHHHHAPHHHHHHHHAPHHHHHHHHG 223
Score = 32.7 bits (73), Expect = 0.46
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = -3
Query: 336 HLHRLFYISNHRLGHVFYLHHTLLYHPFYHHLRNLHDHFVYHRHHIHPD 190
H H + ++H H HH +H HH + H H +H HH H D
Sbjct: 256 HHHHHHHDAHHHHHHHHDAHHHHHHHHDAHHHHH-HHHDAHHHHHHHHD 303
Score = 32.7 bits (73), Expect = 0.46
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -3
Query: 309 NHRLGHVFYLHHTLLYHPFYHHLRNLHDHFVYHRHHIHPDH 187
+H H + HH +H +HH + H H + HH H H
Sbjct: 261 HHDAHHHHHHHHDAHHHHHHHHDAHHHHHHHHDAHHHHHHH 301
Score = 32.7 bits (73), Expect = 0.46
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -3
Query: 309 NHRLGHVFYLHHTLLYHPFYHHLRNLHDHFVYHRHHIHPDH 187
+H H + HH +H +HH + H H + HH H H
Sbjct: 310 HHDAHHHHHHHHDAHHHHHHHHDAHHHHHHHHDAHHHHHHH 350
Score = 32.3 bits (72), Expect = 0.60
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Frame = -3
Query: 330 HRLFYISNHRLGHVFYLHHTLLYH----PFYHHLRNLHDHFVYHRHHIH--PDH 187
H + ++H H ++ HH L YH P +HH H H +H HH H P H
Sbjct: 149 HHHHHAAHH---HPWFHHHHLGYHHHHAPHHHHH---HHHAPHHHHHHHHAPHH 196
Score = 32.3 bits (72), Expect = 0.60
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Frame = -3
Query: 336 HLHRLFYISNHRLGHVFYLHHTLLYH--PFYHHLRNLHDHFVYHRHHIHPDH 187
H H + +H H HH +H P +HH + H +H HH H H
Sbjct: 176 HHHHHHHAPHHHHHHHHAPHHHHHHHHAPHHHHHHHHAPHHHHHHHHGHHHH 227
Score = 32.3 bits (72), Expect = 0.60
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Frame = -3
Query: 336 HLHRLFYISNHRLGHVFYLHHTLLYH--PFYHHLRNLHDHFVYHRHHIHPDH 187
H H + +H H HH +H P +HH + H +H HH H H
Sbjct: 186 HHHHHHHAPHHHHHHHHAPHHHHHHHHAPHHHHHHHHGHHHHHHHHHGHHHH 237
Score = 32.0 bits (71), Expect = 0.78
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -3
Query: 336 HLHRLFYISNHRLGHVFYLHHTLLYHPFYHHLRNLHDHFVYHRHHIHPDH 187
H H + ++H H HH +H HH + HD +H HH H
Sbjct: 276 HHHHHHHDAHHHHHHHHDAHHHHHHHHDAHHHHHHHDAHHHHHHHHDAHH 325
Score = 31.2 bits (69), Expect = 1.3
Identities = 15/50 (30%), Positives = 20/50 (40%)
Frame = -3
Query: 336 HLHRLFYISNHRLGHVFYLHHTLLYHPFYHHLRNLHDHFVYHRHHIHPDH 187
H H +H H HH +H +HH + HD +H HH H
Sbjct: 247 HHHHHHDAHHHHHHHHDAHHHHHHHHDAHHHHHHHHDAHHHHHHHHDAHH 296
Score = 31.2 bits (69), Expect = 1.3
Identities = 15/50 (30%), Positives = 20/50 (40%)
Frame = -3
Query: 336 HLHRLFYISNHRLGHVFYLHHTLLYHPFYHHLRNLHDHFVYHRHHIHPDH 187
H H +H H HH +H +HH + HD +H HH H
Sbjct: 257 HHHHHHDAHHHHHHHHDAHHHHHHHHDAHHHHHHHHDAHHHHHHHHDAHH 306
Score = 30.8 bits (68), Expect = 1.7
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = -3
Query: 309 NHRLGHVFYLHHTLLYHPFYHHLRNLHDH-FVYHRHHIHPDH 187
+H H + HH H HH + H H +H HH HP H
Sbjct: 69 HHEPHHEEHHHHHPEEHHEPHHEEHHHHHPHPHHHHHHHPPH 110
Score = 30.8 bits (68), Expect = 1.7
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -3
Query: 336 HLHRLFYISNHRLGHVFYLHHTLLYHPFYHHLRNLHDHFVYHRHHIHPDH 187
H H + +H + HH +H +HH H H +H HH H H
Sbjct: 200 HHHAPHHHHHHHHAPHHHHHHHHGHHHHHHHHHGHHHH--HHHHHGHHHH 247
Score = 30.8 bits (68), Expect = 1.7
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Frame = -3
Query: 336 HLHRLFYISNHRLGHVFYLHHTLLYHPFYHHLRNLHD-HFVYHRHHIHPDH 187
H H +H H HH +H +HH + HD H +H H H H
Sbjct: 267 HHHHHHDAHHHHHHHHDAHHHHHHHHDAHHHHHHHHDAHHHHHHHDAHHHH 317
Score = 30.4 bits (67), Expect = 2.3
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Frame = -3
Query: 336 HLHRLFYISNHRLGHVFYLHHTLLYH----PFYHHLRNLHDHFVYHRHHIHPDH 187
H H + ++H + HH +H +HH H H +H HH+ H
Sbjct: 117 HHHHHHHAAHHHHHEEHHHHHHAAHHHHHEEHHHHHHAAHHHPWFHHHHLGYHH 170
Score = 30.4 bits (67), Expect = 2.3
Identities = 15/50 (30%), Positives = 20/50 (40%)
Frame = -3
Query: 336 HLHRLFYISNHRLGHVFYLHHTLLYHPFYHHLRNLHDHFVYHRHHIHPDH 187
H H +H H HH +H +HH + HD +H HH H
Sbjct: 237 HHHHHHGHHHHHHHHHDAHHHHHHHHDAHHHHHHHHDAHHHHHHHHDAHH 286
Score = 30.4 bits (67), Expect = 2.3
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = -3
Query: 336 HLHRLFYISNHRLGHVFYLHHTLLYHPFYHHLRNLHDHFVYHRHHIH 196
H H + ++H H HH +H HH + H +H HH H
Sbjct: 305 HHHHHHHDAHHHHHHHHDAHHHHHHHHDAHHHHHHHHDAHHHHHHHH 351
Score = 30.0 bits (66), Expect = 3.0
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Frame = -3
Query: 336 HLHRLFYISNHRLGHVFYLHHTLLYHPFYH----HLRNLHDHFVYHRHHIHPD 190
H H + +H + HH +H +H H + H H +H HH H D
Sbjct: 290 HHHDAHHHHHHHHDAHHHHHHHDAHHHHHHHHDAHHHHHHHHDAHHHHHHHHD 342
Score = 29.6 bits (65), Expect = 3.9
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = -3
Query: 309 NHRLGHVFYLHHTLLYHPFYHHLRNLHDHFVYHRHHIH 196
+H H + HH H +HH H H + H HH H
Sbjct: 85 HHEPHHEEHHHHHPHPHHHHHHHPPHHHHHLGHHHHHH 122
Score = 28.5 bits (62), Expect = 8.6
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Frame = -3
Query: 330 HRLFYISNHRLGHVFYLHHTLLYHPFYHHLRNLHDHFVYHR---HHIHPDH 187
H + +H H + HH +H +HH + H F +H HH H H
Sbjct: 126 HHHHHEEHHHHHHAAHHHHHEEHH-HHHHAAHHHPWFHHHHLGYHHHHAPH 175
>sp|P40349|URB1_USTMA Siderophore biosynthesis regulatory protein URBS1
Length = 950
Score = 34.3 bits (77), Expect = 0.16
Identities = 19/50 (38%), Positives = 21/50 (42%)
Frame = -3
Query: 336 HLHRLFYISNHRLGHVFYLHHTLLYHPFYHHLRNLHDHFVYHRHHIHPDH 187
H R RLG V HH H +HH N H V+H HH H H
Sbjct: 735 HAARASASDGARLGSVVPHHH----HHHHHHHANHASHAVHHGHHHHHHH 780
>sp|Q9NBW1|FRIZ4_DROME Frizzled 4 precursor (Frizzled-4) (dFz4)
Length = 705
Score = 32.0 bits (71), Expect = 0.78
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -3
Query: 315 ISNHRLGHVFYLHHTLLYHPFYHHLRNLHDHFVYHRHHIHPDH 187
+SN+ LG +HH + P +HH + H +H HH H H
Sbjct: 628 MSNYSLGRS--VHHQQRHSPHHHHHQQ-QQHHQFHPHHNHQHH 667
>sp|Q64733|FOXB2_MOUSE Forkhead box protein B2 (Transcription factor FKH-4)
Length = 428
Score = 31.2 bits (69), Expect = 1.3
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -3
Query: 276 HTLLYHPFY-HHLRNLHDHFVYHRHHIHP 193
H +HP + HH + H H +H HH HP
Sbjct: 135 HLHPHHPHHAHHHHHHHHHAAHHHHHHHP 163
>sp|P04196|HRG_HUMAN Histidine-rich glycoprotein precursor (Histidine-proline-rich
glycoprotein) (HPRG)
Length = 525
Score = 30.8 bits (68), Expect = 1.7
Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 6/56 (10%)
Frame = -3
Query: 336 HLHRLFYISNHRLGHVFYLHH-----TLLYHPFYHHLRNLHDHFVY-HRHHIHPDH 187
H H+ H GH + HH T HP HH H H + H HH H H
Sbjct: 350 HPHKHHSHEQHPHGHHPHAHHPHEHDTHRQHPHGHHPHGHHPHGHHPHGHHPHGHH 405
>sp|Q9W349|LOZEN_DROME Lozenge protein
Length = 826
Score = 30.8 bits (68), Expect = 1.7
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
Frame = -3
Query: 279 HHTLLYHPF--YHHLRNLHD---HFVYHRHHIHPDH 187
HH L+H + YHH H H +H HH HP +
Sbjct: 108 HHHHLHHHYSPYHHAHPYHPPHPHAPHHHHHHHPPY 143
>sp|Q9WV48|SHAN1_RAT SH3 and multiple ankyrin repeat domains protein 1 (Shank1)
(GKAP/SAPAP interacting protein) (SPANK-1) (Synamon)
(Somatostatin receptor interacting protein) (SSTR
interacting protein) (SSTRIP)
Length = 2167
Score = 30.4 bits (67), Expect = 2.3
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Frame = -3
Query: 282 LHHTLLYHPFYHHLRNLHDHFVY----HRHHIHPDH 187
L+H+ P +HH + H H H HH HP H
Sbjct: 995 LYHSAALPPAHHHPPHHHHHHAPPPQPHHHHAHPPH 1030
>sp|P21748|SALA_DROOR Protein spalt-accessory precursor
Length = 142
Score = 30.4 bits (67), Expect = 2.3
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -3
Query: 297 GHVFYLHHTLLYHPFYHHLRNLHDHFVYHRHHIHPDH 187
G++ HH H HH R H+H +H HH H H
Sbjct: 107 GYIHGNHHEYPEHHGDHH-REHHEHHGHHEHHGHHRH 142
>sp|P06719|KNOB_PLAFN Knob-associated histidine-rich protein precursor (KAHRP)
Length = 657
Score = 30.0 bits (66), Expect = 3.0
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = -3
Query: 330 HRLFYISNHRLGHVFYLHHTLLYHPFYHHLRNLHDHFVYHRHHIHP 193
H+ + ++H H H H H H H +H HH+HP
Sbjct: 79 HQAPHQAHHHHHHGEVNHQAPQVHQQVHGQDQAHHHHHHHHHHLHP 124
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,978,185
Number of Sequences: 369166
Number of extensions: 496375
Number of successful extensions: 2182
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1860
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2921208590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)