Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_I05
(428 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P47911|RL6_MOUSE 60S ribosomal protein L6 (TAX-responsiv... 140 1e-33
sp|Q6QMZ4|RL6_CHILA 60S ribosomal protein L6 139 3e-33
sp|Q58DQ3|RL6_BOVIN 60S ribosomal protein L6 136 2e-32
sp|P21533|RL6_RAT 60S ribosomal protein L6 (Neoplasm-relate... 136 2e-32
sp|Q02878|RL6_HUMAN 60S ribosomal protein L6 (TAX-responsiv... 135 3e-32
sp|P47991|RL6_CAEEL 60S ribosomal protein L6 135 4e-32
sp|P34091|RL6_MESCR 60S ribosomal protein L6 (YL16-like) 121 5e-28
sp|P05739|RL6B_YEAST 60S ribosomal protein L6-B (L17) (YL16... 116 2e-26
sp|Q02326|RL6A_YEAST 60S ribosomal protein L6-A (L17) (YL16... 115 4e-26
sp|P79071|RL6_SCHPO 60S ribosomal protein L6 96 4e-20
>sp|P47911|RL6_MOUSE 60S ribosomal protein L6 (TAX-responsive enhancer element binding
protein 107) (TAXREB107)
Length = 296
Score = 140 bits (353), Expect = 1e-33
Identities = 77/142 (54%), Positives = 96/142 (67%)
Frame = +3
Query: 3 VLILLAGAHRGKRVIFLKQLTSGLLLVTGPFKLNGCPLRRVHQNMVIATSTKLDISDVFI 182
VLI+L G HRGKRV+FLKQL SGLLLVTGP +N PLRR HQ VIATSTK+DISDV I
Sbjct: 157 VLIILTGRHRGKRVVFLKQLDSGLLLVTGPLVINRVPLRRTHQKFVIATSTKVDISDVKI 216
Query: 183 PERLTDEYFAREEISEDKKINSDVNNIFAKSKKHYVLKEIRKEDQKEVDVQIINSIKKRS 362
P+ LTD YF ++++ +K IF K+ Y + E RK DQK VD+QI+ IK
Sbjct: 217 PKHLTDAYFKKKQL---RKPRHQEGEIFDTEKEKYEITEQRKADQKAVDLQILPKIKA-- 271
Query: 363 DKSMLKRYLKSSFTLSSHDYPH 428
L+ YL+S F+L++ YPH
Sbjct: 272 -VPQLQGYLRSQFSLTNGMYPH 292
>sp|Q6QMZ4|RL6_CHILA 60S ribosomal protein L6
Length = 288
Score = 139 bits (349), Expect = 3e-33
Identities = 77/142 (54%), Positives = 94/142 (66%)
Frame = +3
Query: 3 VLILLAGAHRGKRVIFLKQLTSGLLLVTGPFKLNGCPLRRVHQNMVIATSTKLDISDVFI 182
VLI+L G HRGKRV+FLKQL SGLLLVTGP LN PLRR HQ VIATSTK+DIS+V I
Sbjct: 149 VLIILTGRHRGKRVVFLKQLASGLLLVTGPLNLNRVPLRRTHQKFVIATSTKIDISNVKI 208
Query: 183 PERLTDEYFAREEISEDKKINSDVNNIFAKSKKHYVLKEIRKEDQKEVDVQIINSIKKRS 362
P+ LTD YF ++++ +K IF K+ Y + E RK DQK VD QI+ IK
Sbjct: 209 PKHLTDAYFKKKKL---RKPRHQEGEIFDTEKERYQISEQRKVDQKAVDSQILPKIKA-- 263
Query: 363 DKSMLKRYLKSSFTLSSHDYPH 428
L+ YL+S F L++ YPH
Sbjct: 264 -VPQLRGYLRSVFALTNGIYPH 284
>sp|Q58DQ3|RL6_BOVIN 60S ribosomal protein L6
Length = 287
Score = 136 bits (343), Expect = 2e-32
Identities = 76/142 (53%), Positives = 93/142 (65%)
Frame = +3
Query: 3 VLILLAGAHRGKRVIFLKQLTSGLLLVTGPFKLNGCPLRRVHQNMVIATSTKLDISDVFI 182
+LI+L G HRGKRV+FLKQL SGLLLVTGP LN PLRR HQ VIATSTK+DIS V I
Sbjct: 148 ILIILTGRHRGKRVVFLKQLGSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKI 207
Query: 183 PERLTDEYFAREEISEDKKINSDVNNIFAKSKKHYVLKEIRKEDQKEVDVQIINSIKKRS 362
PE LTD YF ++++ +K IF ++ Y + E RK DQK VD QI+ IK
Sbjct: 208 PEHLTDTYFKKKKL---RKPRHQEGEIFDTEREKYEITEQRKVDQKAVDSQILRRIKA-- 262
Query: 363 DKSMLKRYLKSSFTLSSHDYPH 428
L+ YL+S F L++ YPH
Sbjct: 263 -VPQLQGYLRSVFALTNGIYPH 283
>sp|P21533|RL6_RAT 60S ribosomal protein L6 (Neoplasm-related protein C140)
Length = 298
Score = 136 bits (342), Expect = 2e-32
Identities = 77/142 (54%), Positives = 93/142 (65%)
Frame = +3
Query: 3 VLILLAGAHRGKRVIFLKQLTSGLLLVTGPFKLNGCPLRRVHQNMVIATSTKLDISDVFI 182
VLI+L G HRGKRV+FLKQL SGLLLVTGP LN PLRR HQ VIATSTK+DIS V I
Sbjct: 159 VLIILTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLRRTHQKFVIATSTKVDISKVKI 218
Query: 183 PERLTDEYFAREEISEDKKINSDVNNIFAKSKKHYVLKEIRKEDQKEVDVQIINSIKKRS 362
P+ LTD YF ++ + +K IF K+ Y + E RK DQK VD QI+ IK
Sbjct: 219 PKHLTDAYFKKKPL---RKPRHQEGEIFDTEKEKYEITEQRKADQKAVDSQILPKIKA-- 273
Query: 363 DKSMLKRYLKSSFTLSSHDYPH 428
L+ YL+S F+L++ YPH
Sbjct: 274 -VPQLQGYLRSQFSLTNGMYPH 294
>sp|Q02878|RL6_HUMAN 60S ribosomal protein L6 (TAX-responsive enhancer element binding
protein 107) (TAXREB107) (Neoplasm-related protein C140)
Length = 288
Score = 135 bits (341), Expect = 3e-32
Identities = 76/142 (53%), Positives = 94/142 (66%)
Frame = +3
Query: 3 VLILLAGAHRGKRVIFLKQLTSGLLLVTGPFKLNGCPLRRVHQNMVIATSTKLDISDVFI 182
+LI+L G HRGKRV+FLKQL SGLLLVTGP LN PLRR HQ VIATSTK+DIS+V I
Sbjct: 149 ILIILTGRHRGKRVVFLKQLASGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKI 208
Query: 183 PERLTDEYFAREEISEDKKINSDVNNIFAKSKKHYVLKEIRKEDQKEVDVQIINSIKKRS 362
P+ LTD YF ++++ +K IF K+ Y + E RK DQK VD QI+ IK
Sbjct: 209 PKHLTDAYFKKKKL---RKPRHQEGEIFDTEKEKYEITEQRKIDQKAVDSQILPKIKA-- 263
Query: 363 DKSMLKRYLKSSFTLSSHDYPH 428
L+ YL+S F L++ YPH
Sbjct: 264 -IPQLQGYLRSVFALTNGIYPH 284
>sp|P47991|RL6_CAEEL 60S ribosomal protein L6
Length = 217
Score = 135 bits (340), Expect = 4e-32
Identities = 74/143 (51%), Positives = 94/143 (65%), Gaps = 1/143 (0%)
Frame = +3
Query: 3 VLILLAGAHRGKRVIFLKQLT-SGLLLVTGPFKLNGCPLRRVHQNMVIATSTKLDISDVF 179
VLI+LAG H+GKRV+FLKQL SGLLLVTGP K+NG PLRR+ Q VIATS K+++S V
Sbjct: 76 VLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATSLKVNVSGVK 135
Query: 180 IPERLTDEYFAREEISEDKKINSDVNNIFAKSKKHYVLKEIRKEDQKEVDVQIINSIKKR 359
IPE + DEYF R+ ++ NIFA K Y + E RK+D K VD I+ +IKK
Sbjct: 136 IPEHINDEYFKRKSTAQ-----KTGKNIFASGKTEYTVSEQRKKDIKTVDAPILAAIKKH 190
Query: 360 SDKSMLKRYLKSSFTLSSHDYPH 428
+ L YL + F+L + YPH
Sbjct: 191 PEHKFLFGYLGTRFSLGKNQYPH 213
>sp|P34091|RL6_MESCR 60S ribosomal protein L6 (YL16-like)
Length = 234
Score = 121 bits (304), Expect = 5e-28
Identities = 71/142 (50%), Positives = 99/142 (69%)
Frame = +3
Query: 3 VLILLAGAHRGKRVIFLKQLTSGLLLVTGPFKLNGCPLRRVHQNMVIATSTKLDISDVFI 182
VLI+LAG +GKRV+FLKQL+SGLLLVTGPFK+NG PLRRV+Q VIATSTK+DIS V +
Sbjct: 95 VLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKVNGVPLRRVNQAYVIATSTKVDISGVNV 154
Query: 183 PERLTDEYFAREEISEDKKINSDVNNIFAKSKKHYVLKEIRKEDQKEVDVQIINSIKKRS 362
E+ D+YF ++ ++KK + A+ K+ VL + +K+DQK VDV ++ +I+
Sbjct: 155 -EKFDDKYFGKKAEKKNKKGEGEF--FEAEKKEVNVLPQEKKDDQKAVDVALLKAIEGVP 211
Query: 363 DKSMLKRYLKSSFTLSSHDYPH 428
+ LK YL + F+L + PH
Sbjct: 212 E---LKAYLGARFSLKAGMKPH 230
>sp|P05739|RL6B_YEAST 60S ribosomal protein L6-B (L17) (YL16) (RP18)
Length = 176
Score = 116 bits (290), Expect = 2e-26
Identities = 68/142 (47%), Positives = 94/142 (66%)
Frame = +3
Query: 3 VLILLAGAHRGKRVIFLKQLTSGLLLVTGPFKLNGCPLRRVHQNMVIATSTKLDISDVFI 182
VLILLAG RGKRV++LK L LLVTGPFK+NG PLRRV+ VIATSTK+ + V +
Sbjct: 39 VLILLAGRFRGKRVVYLKHLEDNTLLVTGPFKVNGVPLRRVNARYVIATSTKVSVEGVNV 98
Query: 183 PERLTDEYFAREEISEDKKINSDVNNIFAKSKKHYVLKEIRKEDQKEVDVQIINSIKKRS 362
E+ EYFA+E++++ +K + N+F + + + E R EDQK VD ++ IKK
Sbjct: 99 -EKFNVEYFAKEKLTKKEKKEA---NLFPEQQTKEIKTE-RVEDQKVVDKALLAEIKK-- 151
Query: 363 DKSMLKRYLKSSFTLSSHDYPH 428
+LK+YL +SF+L + D PH
Sbjct: 152 -TPLLKQYLSASFSLKNGDKPH 172
>sp|Q02326|RL6A_YEAST 60S ribosomal protein L6-A (L17) (YL16) (RP18)
Length = 176
Score = 115 bits (288), Expect = 4e-26
Identities = 67/142 (47%), Positives = 94/142 (66%)
Frame = +3
Query: 3 VLILLAGAHRGKRVIFLKQLTSGLLLVTGPFKLNGCPLRRVHQNMVIATSTKLDISDVFI 182
VLILLAG RGKRV++LK L LL++GPFK+NG PLRRV+ VIATSTK+ + V +
Sbjct: 39 VLILLAGRFRGKRVVYLKHLEDNTLLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNV 98
Query: 183 PERLTDEYFAREEISEDKKINSDVNNIFAKSKKHYVLKEIRKEDQKEVDVQIINSIKKRS 362
E+ EYFA+E++++ +K + N+F + + + E R EDQK VD +I IKK
Sbjct: 99 -EKFNVEYFAKEKLTKKEKKEA---NLFPEQQNKEIKAE-RVEDQKVVDKALIAEIKK-- 151
Query: 363 DKSMLKRYLKSSFTLSSHDYPH 428
+LK+YL +SF+L + D PH
Sbjct: 152 -TPLLKQYLSASFSLKNGDKPH 172
>sp|P79071|RL6_SCHPO 60S ribosomal protein L6
Length = 195
Score = 95.5 bits (236), Expect = 4e-20
Identities = 63/143 (44%), Positives = 87/143 (60%), Gaps = 1/143 (0%)
Frame = +3
Query: 3 VLILLAGAHRGKRVIFLKQLTSGLLLVTGPFKLNGCPLRRVHQNMVIATST-KLDISDVF 179
V ILLAG RGKRV+ L QL L+VTGP+K+NG P+RRV+ VIATS K+D+S V
Sbjct: 57 VCILLAGRFRGKRVVVLSQLED-TLVVTGPYKVNGVPIRRVNHRYVIATSAPKIDVSGVS 115
Query: 180 IPERLTDEYFAREEISEDKKINSDVNNIFAKSKKHYVLKEIRKEDQKEVDVQIINSIKKR 359
+ E+ T YFA+++ S K + FA++ L R DQK VD +++ +IK
Sbjct: 116 V-EKFTKAYFAKQKRSGPVKKD---EAFFAENAPKNALPAERIADQKAVDAKLLPAIKAI 171
Query: 360 SDKSMLKRYLKSSFTLSSHDYPH 428
+ +K YL +SF LS+ D PH
Sbjct: 172 PN---MKEYLAASFALSNGDRPH 191
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,999,396
Number of Sequences: 369166
Number of extensions: 730326
Number of successful extensions: 2368
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2345
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2095022160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)