Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_I02
(620 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6P2C8|CRSP8_HUMAN CRSP complex subunit 8 (Cofactor requ... 54 2e-07
sp|Q80VL3|LMO6_MOUSE LIM domain only protein 6 (Triple LIM ... 32 1.00
sp|P56765|ACCD_ARATH Acetyl-coenzyme A carboxylase carboxyl... 32 1.3
sp|P76322|YEDM_ECOLI Hypothetical protein yedM 32 1.3
sp|Q9U943|APLP_LOCMI Apolipophorins precursor [Contains: Ap... 32 1.3
sp|P24814|GRR1_YEAST Ubiquitin ligase complex F-box protein... 31 2.2
sp|P10686|PLCG1_RAT 1-phosphatidylinositol-4,5-bisphosphate... 31 2.9
sp|P08487|PLCG1_BOVIN 1-phosphatidylinositol-4,5-bisphospha... 31 2.9
sp|P34427|LIN36_CAEEL Abnormal cell lineage protein 36 (Pro... 30 3.8
sp|P22503|GUN_PHAVU Endoglucanase precursor (Endo-1,4-beta-... 30 4.9
>sp|Q6P2C8|CRSP8_HUMAN CRSP complex subunit 8 (Cofactor required for Sp1 transcriptional
activation subunit 8) (Transcriptional coactivator
CRSP34) (P37 TRAP/SMCC/PC2 subunit)
Length = 311
Score = 54.3 bits (129), Expect = 2e-07
Identities = 39/151 (25%), Positives = 68/151 (45%)
Frame = +3
Query: 144 FPQLPSTVIQQTATSTTILVKVDETLTCLLRFEGVDLSLVLVKGPMESFNENIACGPEQS 323
FP++ + + TS +LV + + L ++ + + +VKG +NEN+
Sbjct: 173 FPEMSIHLSRPNGTSAMLLVTLGKVLKVIVVMRSLFIDRTIVKG----YNENVYTED--- 225
Query: 324 ADVKNKIDYFTPSKMRLFREITNEAIVLLSSLRSNYFSPFDQHQKFFEWLRSFSNLHSQP 503
K+D ++ S ++F+++T+ A L + P + F WLRS+ L P
Sbjct: 226 ----GKLDIWSKSNYQVFQKVTDHATTALLHYQLPQM-PDVVVRSFMTWLRSYIKLFQAP 280
Query: 504 CSVCNRILGKNHLPPFRRDLADFCRVLHDNC 596
C C + L ++ LPP RD HD C
Sbjct: 281 CQRCGKFL-QDGLPPTWRDFRTL-EAFHDTC 309
>sp|Q80VL3|LMO6_MOUSE LIM domain only protein 6 (Triple LIM domain protein 6)
Length = 624
Score = 32.3 bits (72), Expect = 1.00
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Frame = +1
Query: 154 CHRPLSNKPRLPRRYW*KSMRPSLVCCDLKVSICRSFSSRAP----WNPSTKTSPAGPSK 321
C RPL +P LPRR L+ C S+ ++ P W+ T T+P S
Sbjct: 344 CSRPLLGRPFLPRR--------GLIFCSRACSLGSETTAPGPGRRSWSAGTVTTPLTTST 395
Query: 322 ARMSKIKSIISLRAKCDCSE 381
A S + +K C++
Sbjct: 396 ASFSATEGTSETASKGTCTK 415
>sp|P56765|ACCD_ARATH Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta
(ACCase beta chain)
Length = 488
Score = 32.0 bits (71), Expect = 1.3
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 9/101 (8%)
Frame = +3
Query: 321 SADVKNKIDYFTPSK-MRLFREITNEAIVLLSSLRSNYFSPFDQHQKFFEWLRSFSNLHS 497
S+ N +D SK +R F I+++ + S +++Y FD+ +K FE FS+L
Sbjct: 59 SSSYSNNVDLLVSSKDIRNF--ISDDTFFVRDSNKNSYSIFFDKKKKIFEIDNDFSDLEK 116
Query: 498 QPCSVC------NRILGKN--HLPPFRRDLADFCRVLHDNC 596
S C NR G N H P+ +D C ++C
Sbjct: 117 FFYSYCSSSYLNNRSKGDNDLHYDPYIKDTKYNCTNHINSC 157
>sp|P76322|YEDM_ECOLI Hypothetical protein yedM
Length = 116
Score = 32.0 bits (71), Expect = 1.3
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Frame = +3
Query: 336 NKIDYFTPSKMRLFREITNEAIV------LLSSLRSNYFSPFDQHQKFFEWLRSFSNLHS 497
NK+ T S ++ ++++AI+ L+S L + F+P + K F L F LHS
Sbjct: 17 NKVTSNTESTIKQHELVSDDAIINELSSELVSCLGNGKFTPISEDSKLFNMLSEFKLLHS 76
Query: 498 Q 500
+
Sbjct: 77 E 77
>sp|Q9U943|APLP_LOCMI Apolipophorins precursor [Contains: Apolipophorin-2 (Apolipophorin
II) (apoLp-2); Apolipophorin-1 (Apolipophorin I)
(apoLp-1)]
Length = 3380
Score = 32.0 bits (71), Expect = 1.3
Identities = 26/86 (30%), Positives = 39/86 (45%)
Frame = -1
Query: 401 DCFVRDFSEQSHFARSEIIDFIFDIRALLGPAGDVFVEGFHGALDENERQIDTFKSQQTS 222
D F ++ AR+E +D I I + LGP G + E +DE E + + ++ T
Sbjct: 653 DVFGHSYNVFEIAARTENLDHI--IESFLGPKGYIETEDDDKFVDEVEEKTKSLYNRITE 710
Query: 221 EGLIDFHQYRRGSRGLLDNGRWQLRK 144
F Q R S+ +DN R Q K
Sbjct: 711 RFEKTFRQKRSVSKDAVDNIRQQAYK 736
>sp|P24814|GRR1_YEAST Ubiquitin ligase complex F-box protein GRR1
Length = 1151
Score = 31.2 bits (69), Expect = 2.2
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = +3
Query: 147 PQLPSTVIQQTATSTTILVKV-DETLTCLLRFEGVDLSLVLVKGPMESFNEN--IACGPE 317
PQ+PS ++TATS +V D TL + RF+ + +L + N+N + P+
Sbjct: 53 PQMPSRT-RETATSERNASEVRDATLNNIFRFDSIQRETLLPTNNGQPLNQNFSLTFQPQ 111
Query: 318 QSADVKNKIDYFT 356
Q + N ID T
Sbjct: 112 QQTNALNGIDINT 124
>sp|P10686|PLCG1_RAT 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1
(Phosphoinositide phospholipase C) (PLC-gamma-1)
(Phospholipase C-gamma-1) (PLC-II) (PLC-148)
Length = 1290
Score = 30.8 bits (68), Expect = 2.9
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +3
Query: 411 SSLRSNYFSPFDQHQKFFEWLRSFSNLHSQPCSVCNRILGKNHLP 545
S++R F PFD+ LR +PC +C +LG HLP
Sbjct: 1067 STMRDEAFDPFDKSS-----LRGL-----EPCVICIEVLGARHLP 1101
>sp|P08487|PLCG1_BOVIN 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1
(Phosphoinositide phospholipase C) (PLC-gamma-1)
(Phospholipase C-gamma-1) (PLC-II) (PLC-148)
Length = 1291
Score = 30.8 bits (68), Expect = 2.9
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +3
Query: 411 SSLRSNYFSPFDQHQKFFEWLRSFSNLHSQPCSVCNRILGKNHLP 545
S +R F PFD+ LR +PC++C +LG HLP
Sbjct: 1067 SVMRDEAFDPFDKSS-----LRGL-----EPCAICIEVLGARHLP 1101
>sp|P34427|LIN36_CAEEL Abnormal cell lineage protein 36 (Protein lin-36)
Length = 962
Score = 30.4 bits (67), Expect = 3.8
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Frame = +3
Query: 462 FEWLRSFSNLHSQPCSVCNRIL--GKNHL 542
F+ +SNL +PC+VCNR++ G+ HL
Sbjct: 152 FKKFSPYSNLTHKPCTVCNRVMKSGEMHL 180
>sp|P22503|GUN_PHAVU Endoglucanase precursor (Endo-1,4-beta-glucanase) (Abscission
cellulase)
Length = 496
Score = 30.0 bits (66), Expect = 4.9
Identities = 13/50 (26%), Positives = 30/50 (60%), Gaps = 7/50 (14%)
Frame = -3
Query: 192 SWKSRFVG*RSMATEETF-------PAETRSQTFVCSARNGKDLSQMRSS 64
SW ++FVG +++ TEE + +T +++F+C+ G + Q++++
Sbjct: 282 SWDNKFVGAQTLLTEEFYGGKKDLAKIKTDAESFICAVMPGSNSRQIKTT 331
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,687,657
Number of Sequences: 369166
Number of extensions: 1524428
Number of successful extensions: 5022
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5021
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 4877307000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)