Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_H24
(586 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain 342 3e-94
sp|P18258|TBA1_PARLI Tubulin alpha-1 chain 342 5e-94
sp|P06605|TBA3_DROME Tubulin alpha-3 chain 342 5e-94
sp|P06603|TBA1_DROME Tubulin alpha-1 chain 341 7e-94
sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific 340 2e-93
sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6) 339 3e-93
sp|P08537|TBA_XENLA Tubulin alpha chain 339 3e-93
sp|Q9BQE3|TBA6_HUMAN Tubulin alpha-6 chain (Alpha-tubulin 6) 339 3e-93
sp|P68373|TBA6_MOUSE Tubulin alpha-6 chain (Alpha-tubulin 6... 339 3e-93
sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1... 339 3e-93
>sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain
Length = 452
Score = 342 bits (878), Expect = 3e-94
Identities = 164/182 (90%), Positives = 169/182 (92%)
Frame = +2
Query: 2 HVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVF 181
H+GQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVF
Sbjct: 8 HIGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVF 67
Query: 182 VDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLAD 361
VDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYT+GKEI+DLVLDRIRKLAD
Sbjct: 68 VDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEIIDLVLDRIRKLAD 127
Query: 362 QCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNS 541
QCTGLQGFLIFH LLMERLSVDYGKKSKLEFA+YPAPQI+TAVVEPYNS
Sbjct: 128 QCTGLQGFLIFHSFGGGTGSGFSSLLMERLSVDYGKKSKLEFAIYPAPQISTAVVEPYNS 187
Query: 542 FL 547
L
Sbjct: 188 IL 189
>sp|P18258|TBA1_PARLI Tubulin alpha-1 chain
Length = 452
Score = 342 bits (876), Expect = 5e-94
Identities = 164/182 (90%), Positives = 169/182 (92%)
Frame = +2
Query: 2 HVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVF 181
HVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVF
Sbjct: 8 HVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVF 67
Query: 182 VDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLAD 361
VDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYT+GKE++D+VLDRIRKLAD
Sbjct: 68 VDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKELIDIVLDRIRKLAD 127
Query: 362 QCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNS 541
QCTGLQGFLIFH LLMERLSVDYGKKSKLEFAVYPAPQI+TAVVEPYNS
Sbjct: 128 QCTGLQGFLIFHSFGGGTGSGFSSLLMERLSVDYGKKSKLEFAVYPAPQISTAVVEPYNS 187
Query: 542 FL 547
L
Sbjct: 188 IL 189
>sp|P06605|TBA3_DROME Tubulin alpha-3 chain
Length = 450
Score = 342 bits (876), Expect = 5e-94
Identities = 165/182 (90%), Positives = 169/182 (92%)
Frame = +2
Query: 2 HVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVF 181
HVGQAGVQ+GNACWELYCLEHGIQPDGQMPSDKT+GGGDDSFNTFFSETGAGKHVPRAVF
Sbjct: 8 HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGAGKHVPRAVF 67
Query: 182 VDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLAD 361
VDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLAD
Sbjct: 68 VDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLAD 127
Query: 362 QCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNS 541
QCTGLQGFLIFH LLMERLSVDYGKKSKLEFAVYPAPQ++TAVVEPYNS
Sbjct: 128 QCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAVYPAPQVSTAVVEPYNS 187
Query: 542 FL 547
L
Sbjct: 188 IL 189
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain
Length = 450
Score = 341 bits (875), Expect = 7e-94
Identities = 164/182 (90%), Positives = 169/182 (92%)
Frame = +2
Query: 2 HVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVF 181
HVGQAGVQ+GNACWELYCLEHGIQPDGQMPSDKT+GGGDDSFNTFFSETGAGKHVPRAVF
Sbjct: 8 HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGAGKHVPRAVF 67
Query: 182 VDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLAD 361
VDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLAD
Sbjct: 68 VDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLAD 127
Query: 362 QCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNS 541
QCTGLQGFLIFH LLMERLSVDYGKKSKLEFA+YPAPQ++TAVVEPYNS
Sbjct: 128 QCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNS 187
Query: 542 FL 547
L
Sbjct: 188 IL 189
>sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific
Length = 450
Score = 340 bits (872), Expect = 2e-93
Identities = 163/182 (89%), Positives = 169/182 (92%)
Frame = +2
Query: 2 HVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVF 181
HVGQAGVQ+GNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVF
Sbjct: 8 HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVF 67
Query: 182 VDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLAD 361
VDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDR+RKL+D
Sbjct: 68 VDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRVRKLSD 127
Query: 362 QCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNS 541
QCTGLQGFLIFH LLMERLSVDYGKKSKLEFA+YPAPQ++TAVVEPYNS
Sbjct: 128 QCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNS 187
Query: 542 FL 547
L
Sbjct: 188 IL 189
>sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6)
Length = 451
Score = 339 bits (870), Expect = 3e-93
Identities = 161/182 (88%), Positives = 169/182 (92%)
Frame = +2
Query: 2 HVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVF 181
HVGQAGVQ+GNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVF
Sbjct: 8 HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVF 67
Query: 182 VDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLAD 361
VDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DLVLDRIRKLAD
Sbjct: 68 VDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLAD 127
Query: 362 QCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNS 541
QCTGLQGFL+FH LLMERLSVDYGKKSKLEF++YPAPQ++TAVVEPYNS
Sbjct: 128 QCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNS 187
Query: 542 FL 547
L
Sbjct: 188 IL 189
>sp|P08537|TBA_XENLA Tubulin alpha chain
Length = 449
Score = 339 bits (870), Expect = 3e-93
Identities = 161/182 (88%), Positives = 169/182 (92%)
Frame = +2
Query: 2 HVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVF 181
HVGQAGVQ+GNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVF
Sbjct: 8 HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVF 67
Query: 182 VDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLAD 361
VDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DLVLDRIRKLAD
Sbjct: 68 VDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLAD 127
Query: 362 QCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNS 541
QCTGLQGFL+FH LL+ERLSVDYGKKSKLEFA+YPAPQ++TAVVEPYNS
Sbjct: 128 QCTGLQGFLVFHSFGGGTGSGFTSLLLERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNS 187
Query: 542 FL 547
L
Sbjct: 188 IL 189
>sp|Q9BQE3|TBA6_HUMAN Tubulin alpha-6 chain (Alpha-tubulin 6)
Length = 449
Score = 339 bits (870), Expect = 3e-93
Identities = 161/182 (88%), Positives = 169/182 (92%)
Frame = +2
Query: 2 HVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVF 181
HVGQAGVQ+GNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVF
Sbjct: 8 HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVF 67
Query: 182 VDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLAD 361
VDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DLVLDRIRKLAD
Sbjct: 68 VDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLAD 127
Query: 362 QCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNS 541
QCTGLQGFL+FH LLMERLSVDYGKKSKLEF++YPAPQ++TAVVEPYNS
Sbjct: 128 QCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNS 187
Query: 542 FL 547
L
Sbjct: 188 IL 189
>sp|P68373|TBA6_MOUSE Tubulin alpha-6 chain (Alpha-tubulin 6) (Alpha-tubulin isotype
M-alpha-6)
sp|P68365|TBA3_CRIGR Tubulin alpha-3 chain (Alpha-tubulin 3) (Alpha-tubulin III)
Length = 449
Score = 339 bits (870), Expect = 3e-93
Identities = 161/182 (88%), Positives = 169/182 (92%)
Frame = +2
Query: 2 HVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVF 181
HVGQAGVQ+GNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVF
Sbjct: 8 HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVF 67
Query: 182 VDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLAD 361
VDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DLVLDRIRKLAD
Sbjct: 68 VDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLAD 127
Query: 362 QCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNS 541
QCTGLQGFL+FH LLMERLSVDYGKKSKLEF++YPAPQ++TAVVEPYNS
Sbjct: 128 QCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNS 187
Query: 542 FL 547
L
Sbjct: 188 IL 189
>sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin isotype
M-alpha-1)
sp|P68362|TBA2_CRIGR Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin II)
sp|Q71U36|TBA3_HUMAN Tubulin alpha-3 chain (Alpha-tubulin 3) (Tubulin B-alpha-1)
sp|P68370|TBA1_RAT Tubulin alpha-1 chain (Alpha-tubulin 1)
Length = 451
Score = 339 bits (870), Expect = 3e-93
Identities = 161/182 (88%), Positives = 169/182 (92%)
Frame = +2
Query: 2 HVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVF 181
HVGQAGVQ+GNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVF
Sbjct: 8 HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVF 67
Query: 182 VDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLAD 361
VDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DLVLDRIRKLAD
Sbjct: 68 VDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLAD 127
Query: 362 QCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNS 541
QCTGLQGFL+FH LLMERLSVDYGKKSKLEF++YPAPQ++TAVVEPYNS
Sbjct: 128 QCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNS 187
Query: 542 FL 547
L
Sbjct: 188 IL 189
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,094,635
Number of Sequences: 369166
Number of extensions: 1222752
Number of successful extensions: 3965
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3685
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4357244645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)