Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_H18
(485 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P21573|YBOX1_XENLA Nuclease sensitive element binding pr... 69 8e-12
sp|Q00436|YB3_XENLA B box binding protein (YB3 protein) 67 2e-11
sp|P62960|YBOX1_MOUSE Nuclease sensitive element binding pr... 67 3e-11
sp|P67809|YBOX1_HUMAN Nuclease sensitive element binding pr... 67 3e-11
sp|Q06066|YBOX1_CHICK Nuclease sensitive element binding pr... 67 3e-11
sp|P41824|YBOXH_APLCA Y-box factor homolog (APY1) 65 8e-11
sp|P62169|CSPC_BACAN Cold shock-like protein cspC >gi|49061... 64 1e-10
sp|P45441|YBX2B_XENLA Y-box binding protein 2-B (Cytoplasmi... 62 5e-10
sp|P39158|CSPC_BACSU Cold shock protein cspC 62 5e-10
sp|Q9S170|CSPG_SHEVI Cold shock-like protein cspG 62 5e-10
>sp|P21573|YBOX1_XENLA Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor)
Length = 303
Score = 68.6 bits (166), Expect = 8e-12
Identities = 41/103 (39%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Frame = +2
Query: 2 WFNSKSGYGFIQREDGNDSDVFVHHSSIAATNAN----SLADGEEVQFDVVQGSKGLEAR 169
WFN ++GYGFI R D + DVFVH ++I N S+ DGE V+FDVV+G KG EA
Sbjct: 43 WFNVRNGYGFINRNDTKE-DVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAA 101
Query: 170 XXXXXXXXXXXXXKPFFQQNDNRSYGNRDGDRSDYRNQSYSGN 298
K +N R Y R G +Y+ Q+Y N
Sbjct: 102 NVTGPEGVPVQGSKYAADRNHYRRYPRRRGPPRNYQ-QNYQNN 143
>sp|Q00436|YB3_XENLA B box binding protein (YB3 protein)
Length = 305
Score = 67.4 bits (163), Expect = 2e-11
Identities = 40/103 (38%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Frame = +2
Query: 2 WFNSKSGYGFIQREDGNDSDVFVHHSSIAATNAN----SLADGEEVQFDVVQGSKGLEAR 169
WFN ++GYGFI R D + DVFVH ++I N S+ DGE V+FDVV+G KG EA
Sbjct: 43 WFNVRNGYGFINRNDTKE-DVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAA 101
Query: 170 XXXXXXXXXXXXXKPFFQQNDNRSYGNRDGDRSDYRNQSYSGN 298
K +N+ R Y R G +Y+ Q+Y +
Sbjct: 102 NVTGPGPVPVQGSKYAADRNNYRRYPRRRGPPRNYQ-QNYQNS 143
>sp|P62960|YBOX1_MOUSE Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
sp|P62961|YBOX1_RAT Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
Length = 322
Score = 66.6 bits (161), Expect = 3e-11
Identities = 40/103 (38%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Frame = +2
Query: 2 WFNSKSGYGFIQREDGNDSDVFVHHSSIAATNAN----SLADGEEVQFDVVQGSKGLEAR 169
WFN ++GYGFI R D + DVFVH ++I N S+ DGE V+FDVV+G KG EA
Sbjct: 63 WFNVRNGYGFINRNDTKE-DVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAA 121
Query: 170 XXXXXXXXXXXXXKPFFQQNDNRSYGNRDGDRSDYRNQSYSGN 298
K +N R Y R G +Y+ Q+Y +
Sbjct: 122 NVTGPGGVPVQGSKYAADRNHYRRYPRRRGPPRNYQ-QNYQNS 163
>sp|P67809|YBOX1_HUMAN Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
sp|P67808|YBOX1_BOVIN Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
Length = 324
Score = 66.6 bits (161), Expect = 3e-11
Identities = 40/103 (38%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Frame = +2
Query: 2 WFNSKSGYGFIQREDGNDSDVFVHHSSIAATNAN----SLADGEEVQFDVVQGSKGLEAR 169
WFN ++GYGFI R D + DVFVH ++I N S+ DGE V+FDVV+G KG EA
Sbjct: 65 WFNVRNGYGFINRNDTKE-DVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAA 123
Query: 170 XXXXXXXXXXXXXKPFFQQNDNRSYGNRDGDRSDYRNQSYSGN 298
K +N R Y R G +Y+ Q+Y +
Sbjct: 124 NVTGPGGVPVQGSKYAADRNHYRRYPRRRGPPRNYQ-QNYQNS 165
>sp|Q06066|YBOX1_CHICK Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor)
Length = 321
Score = 66.6 bits (161), Expect = 3e-11
Identities = 40/103 (38%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Frame = +2
Query: 2 WFNSKSGYGFIQREDGNDSDVFVHHSSIAATNAN----SLADGEEVQFDVVQGSKGLEAR 169
WFN ++GYGFI R D + DVFVH ++I N S+ DGE V+FDVV+G KG EA
Sbjct: 62 WFNVRNGYGFINRNDTKE-DVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAA 120
Query: 170 XXXXXXXXXXXXXKPFFQQNDNRSYGNRDGDRSDYRNQSYSGN 298
K +N R Y R G +Y+ Q+Y +
Sbjct: 121 NVTGPGGVPVQGSKYAADRNHYRRYPRRRGPPRNYQ-QNYQNS 162
>sp|P41824|YBOXH_APLCA Y-box factor homolog (APY1)
Length = 253
Score = 65.1 bits (157), Expect = 8e-11
Identities = 33/59 (55%), Positives = 41/59 (69%), Gaps = 4/59 (6%)
Frame = +2
Query: 2 WFNSKSGYGFIQREDGNDSDVFVHHSSIAATNAN----SLADGEEVQFDVVQGSKGLEA 166
WFN KSGYGFI R+D + DVFVH ++I N S+ DGE+V+FDVV+G KG EA
Sbjct: 39 WFNVKSGYGFINRDDTKE-DVFVHQTAIVKNNPRKYLRSVGDGEKVEFDVVEGEKGNEA 96
>sp|P62169|CSPC_BACAN Cold shock-like protein cspC
sp|P62170|CSPC_BACCE Cold shock-like protein cspC
sp|P62171|CSPC_BACCR Cold shock-like protein cspC
Length = 65
Score = 64.3 bits (155), Expect = 1e-10
Identities = 28/55 (50%), Positives = 42/55 (76%)
Frame = +2
Query: 2 WFNSKSGYGFIQREDGNDSDVFVHHSSIAATNANSLADGEEVQFDVVQGSKGLEA 166
WFN++ G+GFI+REDG+D VFVH S+I SL +G++V+FD+V G++G +A
Sbjct: 7 WFNAEKGFGFIEREDGDD--VFVHFSAIQQDGYKSLEEGQQVEFDIVDGARGPQA 59
>sp|P45441|YBX2B_XENLA Y-box binding protein 2-B (Cytoplasmic RNA-binding protein p54)
(mRNP3)
Length = 324
Score = 62.4 bits (150), Expect = 5e-10
Identities = 31/59 (52%), Positives = 39/59 (66%), Gaps = 4/59 (6%)
Frame = +2
Query: 2 WFNSKSGYGFIQREDGNDSDVFVHHSSIAATNAN----SLADGEEVQFDVVQGSKGLEA 166
WFN ++GYGFI R D + DVFVH ++I N S+ DGE V+FDVV+G KG EA
Sbjct: 48 WFNVRNGYGFINRNDSKE-DVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEGEKGAEA 105
>sp|P39158|CSPC_BACSU Cold shock protein cspC
Length = 66
Score = 62.4 bits (150), Expect = 5e-10
Identities = 28/55 (50%), Positives = 42/55 (76%)
Frame = +2
Query: 2 WFNSKSGYGFIQREDGNDSDVFVHHSSIAATNANSLADGEEVQFDVVQGSKGLEA 166
WFN++ G+GFI+RE+G+D VFVH S+I + SL +G++V FDV QG++G +A
Sbjct: 8 WFNAEKGFGFIERENGDD--VFVHFSAIQSDGFKSLDEGQKVSFDVEQGARGAQA 60
>sp|Q9S170|CSPG_SHEVI Cold shock-like protein cspG
Length = 70
Score = 62.4 bits (150), Expect = 5e-10
Identities = 28/55 (50%), Positives = 40/55 (72%)
Frame = +2
Query: 2 WFNSKSGYGFIQREDGNDSDVFVHHSSIAATNANSLADGEEVQFDVVQGSKGLEA 166
WFN + G+GFI +++G D DVFVH SI + +LA+G++V F+V QG KGL+A
Sbjct: 11 WFNEEKGFGFITQDNGGD-DVFVHFRSITSDGFKTLAEGQKVSFEVEQGQKGLQA 64
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,258,975
Number of Sequences: 369166
Number of extensions: 788914
Number of successful extensions: 2007
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1935
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2921208590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)