Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_H13
(148 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9K063|PUR7_NEIMB Phosphoribosylaminoimidazole-succinoca... 28 6.4
sp|Q9JV73|PUR7_NEIMA Phosphoribosylaminoimidazole-succinoca... 28 6.4
>sp|Q9K063|PUR7_NEIMB Phosphoribosylaminoimidazole-succinocarboxamide synthase (SAICAR
synthetase)
Length = 287
Score = 28.1 bits (61), Expect = 6.4
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -1
Query: 115 GKIVKKQDSYFHKKFVHICPNHF 47
G+I+ + +++ KK HI PNHF
Sbjct: 48 GEILTQISNFWFKKLAHIMPNHF 70
>sp|Q9JV73|PUR7_NEIMA Phosphoribosylaminoimidazole-succinocarboxamide synthase (SAICAR
synthetase)
Length = 287
Score = 28.1 bits (61), Expect = 6.4
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -1
Query: 115 GKIVKKQDSYFHKKFVHICPNHF 47
G+I+ + +++ KK HI PNHF
Sbjct: 48 GEILTQISNFWFKKLAHIMPNHF 70
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,222,215
Number of Sequences: 369166
Number of extensions: 196981
Number of successful extensions: 622
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 68,354,980
effective HSP length: 22
effective length of database: 64,290,810
effective search space used: 1671561060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)