Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_H11
(101 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P60411|KR109_HUMAN Keratin-associated protein 10-9 (Kera... 27 0.73
sp|P60331|KR101_HUMAN Keratin-associated protein 10-1 (Kera... 28 2.0
sp|P60370|KR105_HUMAN Keratin-associated protein 10-5 (Kera... 28 4.9
sp|P60368|KR102_HUMAN Keratin-associated protein 10-2 (Kera... 28 8.4
sp|P60409|KR107_HUMAN Keratin-associated protein 10-7 (Kera... 28 8.4
sp|P60369|KR103_HUMAN Keratin-associated protein 10-3 (Kera... 28 8.4
>sp|P60411|KR109_HUMAN Keratin-associated protein 10-9 (Keratin-associated protein 10.9)
(High sulfur keratin-associated protein 10.9)
(Keratin-associated protein 18-9) (Keratin-associated
protein 18.9)
Length = 292
Score = 27.3 bits (59), Expect(2) = 0.73
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -1
Query: 89 PVCKATLSPRINGIIVPPCCKPLC 18
P C T SP VP CCKP+C
Sbjct: 170 PAC-CTSSPCQQSCCVPVCCKPVC 192
Score = 22.7 bits (47), Expect(2) = 0.73
Identities = 6/10 (60%), Positives = 8/10 (80%)
Frame = -1
Query: 41 PPCCKPLCAL 12
P CCKP+C +
Sbjct: 190 PVCCKPICCV 199
>sp|P60331|KR101_HUMAN Keratin-associated protein 10-1 (Keratin-associated protein 10.1)
(High sulfur keratin-associated protein 10.1)
(Keratin-associated protein 18-1) (Keratin-associated
protein 18.1)
Length = 282
Score = 27.7 bits (60), Expect = 8.4
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -1
Query: 89 PVCKATLSPRINGIIVPPCCKPLCAL 12
P C T SP +P CCKP+C L
Sbjct: 87 PAC-CTSSPCQQACCMPVCCKPVCCL 111
Score = 25.8 bits (55), Expect(2) = 2.0
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 89 PVCKATLSPRINGIIVPPCCKPLC 18
P C A+ S + VP CCKP+C
Sbjct: 129 PTCCASSSSQ-QSCCVPVCCKPVC 151
Score = 22.7 bits (47), Expect(2) = 2.0
Identities = 6/10 (60%), Positives = 8/10 (80%)
Frame = -1
Query: 41 PPCCKPLCAL 12
P CCKP+C +
Sbjct: 191 PVCCKPICCV 200
>sp|P60370|KR105_HUMAN Keratin-associated protein 10-5 (Keratin-associated protein 10.5)
(High sulfur keratin-associated protein 10.5)
(Keratin-associated protein 18-5) (Keratin-associated
protein 18.5)
Length = 271
Score = 28.5 bits (62), Expect = 4.9
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -1
Query: 89 PVCKATLSPRINGIIVPPCCKPLCAL 12
P C A+ SP VP CCKP+C L
Sbjct: 76 PACCAS-SPCQQACCVPVCCKPVCCL 100
>sp|P60368|KR102_HUMAN Keratin-associated protein 10-2 (Keratin-associated protein 10.2)
(High sulfur keratin-associated protein 10.2)
(Keratin-associated protein 18-2) (Keratin-associated
protein 18.2)
Length = 255
Score = 27.7 bits (60), Expect = 8.4
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -1
Query: 89 PVCKATLSPRINGIIVPPCCKPLCAL 12
P C T SP VP CCKP+C +
Sbjct: 87 PAC-CTSSPCQQACCVPVCCKPVCCV 111
>sp|P60409|KR107_HUMAN Keratin-associated protein 10-7 (Keratin-associated protein 10.7)
(High sulfur keratin-associated protein 10.7)
(Keratin-associated protein 18-7) (Keratin-associated
protein 18.7)
Length = 370
Score = 27.7 bits (60), Expect = 8.4
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -1
Query: 89 PVCKATLSPRINGIIVPPCCKPLCAL 12
P C T SP VP CCKP+C +
Sbjct: 216 PAC-CTSSPCQQACCVPVCCKPVCCV 240
Score = 27.7 bits (60), Expect = 8.4
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -1
Query: 89 PVCKATLSPRINGIIVPPCCKPLCAL 12
P C T S G VP CCKP+C +
Sbjct: 253 PAC-CTSSQSQQGCCVPVCCKPVCCV 277
>sp|P60369|KR103_HUMAN Keratin-associated protein 10-3 (Keratin-associated protein 10.3)
(High sulfur keratin-associated protein 10.3)
(Keratin-associated protein 18-3) (Keratin-associated
protein 18.3)
Length = 221
Score = 27.7 bits (60), Expect = 8.4
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -1
Query: 89 PVCKATLSPRINGIIVPPCCKPLCAL 12
P C T SP VP CCKP+C +
Sbjct: 87 PAC-CTSSPCQQACCVPVCCKPVCCV 111
Score = 23.5 bits (49), Expect(2) = 9.2
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -1
Query: 44 VPPCCKPLC 18
VP CCKP+C
Sbjct: 111 VPVCCKPVC 119
Score = 22.7 bits (47), Expect(2) = 9.2
Identities = 6/10 (60%), Positives = 8/10 (80%)
Frame = -1
Query: 41 PPCCKPLCAL 12
P CCKP+C +
Sbjct: 117 PVCCKPICCV 126
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.309 0.121 0.316
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,399,349
Number of Sequences: 369166
Number of extensions: 93081
Number of successful extensions: 355
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 68,354,980
effective HSP length: 8
effective length of database: 66,877,100
effective search space used: 1671927500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)