Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_H08
(793 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P24877|NU2M_ASCSU NADH-ubiquinone oxidoreductase chain 2... 31 4.4
sp|Q9XUB2|MEX5_CAEEL Zinc finger protein mex-5 30 7.5
sp|P36092|YKE4_YEAST Hypothetical 12.4 kDa protein in PRI2-... 30 9.8
sp|Q9P7Q9|YFV5_SCHPO Putative glycosyl transferase C1834.05... 30 9.8
>sp|P24877|NU2M_ASCSU NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
2)
Length = 300
Score = 30.8 bits (68), Expect = 4.4
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Frame = +2
Query: 581 TSFISITRVFFFIIYYL----FLTPKKH*IFLG*SDINRILFYTFSFMHNTPFICSFFSK 748
T F+S+ V + YY+ FL P D N + + N PF SFF K
Sbjct: 163 TCFLSVVNVIYLFFYYVVLMAFLMPN-----FNVKDFNFVNWEVLLVFLNVPFSVSFFIK 217
Query: 749 FFMM 760
F++
Sbjct: 218 IFVL 221
>sp|Q9XUB2|MEX5_CAEEL Zinc finger protein mex-5
Length = 468
Score = 30.0 bits (66), Expect = 7.5
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = -1
Query: 313 SLAPPIKPRTIWLHLSSTNGNPITAFSPIPFSL 215
++ P +PR + + +SST P+T+ +P+P SL
Sbjct: 160 AIPPQQQPRQVGVEISSTRTAPLTSSTPLPTSL 192
>sp|P36092|YKE4_YEAST Hypothetical 12.4 kDa protein in PRI2-PHD1 intergenic region
Length = 106
Score = 29.6 bits (65), Expect = 9.8
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -1
Query: 283 IWLHLSSTNGN-PITAFSPIPFSLFTMENKCL*MISIG*PLFIF 155
IW+HLS+ N P F P FSLF ++ K +I P F+F
Sbjct: 23 IWMHLSAYKINFPFVQF-PTFFSLFRLQKKAAILIKNPSPFFLF 65
>sp|Q9P7Q9|YFV5_SCHPO Putative glycosyl transferase C1834.05 in chromosome I
Length = 577
Score = 29.6 bits (65), Expect = 9.8
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Frame = -1
Query: 388 GVFLGPCNWMPKGACVPKTTLGLCLSLAPPIKPRTI----WLHLSSTNGNPITAFSPIPF 221
G++ +++P + TL L L+PP RT+ ++ + + G P +A IPF
Sbjct: 137 GMWSASTSFLPSSFAMNMVTLALSAQLSPPSTKRTVKVVSFITIGAVIGWPFSAALSIPF 196
Query: 220 SLFTM 206
L +
Sbjct: 197 ILLEL 201
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,827,220
Number of Sequences: 369166
Number of extensions: 1955898
Number of successful extensions: 3581
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3578
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7425705210
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)