Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_G18-2
(237 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O42387|RS24_FUGRU 40S ribosomal protein S24 82 5e-16
sp|Q9W6X9|RS24_ORYLA 40S ribosomal protein S24 82 5e-16
sp|Q90YQ0|RS24_ICTPU 40S ribosomal protein S24 80 1e-15
sp|P02377|RS24_XENLA 40S ribosomal protein S24 (S19) 79 3e-15
sp|P62850|RS24_RAT 40S ribosomal protein S24 >gi|51338647|s... 79 3e-15
sp|O59865|RS24B_SCHPO 40S ribosomal protein S24-B 75 6e-14
sp|Q962Q6|RS24_SPOFR 40S ribosomal protein S24 69 3e-12
sp|O13784|RS24A_SCHPO 40S ribosomal protein S24-A 67 1e-11
sp|Q9SS17|RS24_ARATH 40S ribosomal protein S24 64 8e-11
sp|P14249|RS24_RHIRA 40S ribosomal protein S24 64 1e-10
>sp|O42387|RS24_FUGRU 40S ribosomal protein S24
Length = 132
Score = 81.6 bits (200), Expect = 5e-16
Identities = 41/65 (63%), Positives = 46/65 (70%)
Frame = +2
Query: 2 KTRKFLTNKLLQRKQMVVDVLHPGRATVPKTEIREHLAKMYNNNSRCCFCFPLQNQLRWR 181
+TRKF+TN+LLQRKQMVVDVLHPG+ATVPKTEIRE LAKMY F F + Q
Sbjct: 8 RTRKFMTNRLLQRKQMVVDVLHPGKATVPKTEIREKLAKMYKTTPDVVFVFGFRTQFGGG 67
Query: 182 KIIRF 196
K F
Sbjct: 68 KTTGF 72
Score = 63.2 bits (152), Expect = 2e-10
Identities = 27/39 (69%), Positives = 33/39 (84%)
Frame = +3
Query: 117 KCTTTTPDVVFAFHFRTNFGGGRSSGFALIYDTLDYAKK 233
K TTPDVVF F FRT FGGG+++GFA++YD+LDYAKK
Sbjct: 46 KMYKTTPDVVFVFGFRTQFGGGKTTGFAMVYDSLDYAKK 84
>sp|Q9W6X9|RS24_ORYLA 40S ribosomal protein S24
Length = 132
Score = 81.6 bits (200), Expect = 5e-16
Identities = 41/65 (63%), Positives = 46/65 (70%)
Frame = +2
Query: 2 KTRKFLTNKLLQRKQMVVDVLHPGRATVPKTEIREHLAKMYNNNSRCCFCFPLQNQLRWR 181
+TRKF+TN+LLQRKQMVVDVLHPG+ATVPKTEIRE LAKMY F F + Q
Sbjct: 8 RTRKFMTNRLLQRKQMVVDVLHPGKATVPKTEIREKLAKMYKTTPDVVFVFGFRTQFGGG 67
Query: 182 KIIRF 196
K F
Sbjct: 68 KTTGF 72
Score = 63.2 bits (152), Expect = 2e-10
Identities = 27/39 (69%), Positives = 33/39 (84%)
Frame = +3
Query: 117 KCTTTTPDVVFAFHFRTNFGGGRSSGFALIYDTLDYAKK 233
K TTPDVVF F FRT FGGG+++GFA++YD+LDYAKK
Sbjct: 46 KMYKTTPDVVFVFGFRTQFGGGKTTGFAMVYDSLDYAKK 84
>sp|Q90YQ0|RS24_ICTPU 40S ribosomal protein S24
Length = 131
Score = 80.5 bits (197), Expect = 1e-15
Identities = 40/65 (61%), Positives = 46/65 (70%)
Frame = +2
Query: 2 KTRKFLTNKLLQRKQMVVDVLHPGRATVPKTEIREHLAKMYNNNSRCCFCFPLQNQLRWR 181
+TRKF+TN+LLQRKQMV+DVLHPG+ATVPKTEIRE LAKMY F F + Q
Sbjct: 8 RTRKFMTNRLLQRKQMVLDVLHPGKATVPKTEIREKLAKMYKTTPDVVFVFGFKTQFGGG 67
Query: 182 KIIRF 196
K F
Sbjct: 68 KTTGF 72
Score = 62.0 bits (149), Expect = 4e-10
Identities = 26/39 (66%), Positives = 33/39 (84%)
Frame = +3
Query: 117 KCTTTTPDVVFAFHFRTNFGGGRSSGFALIYDTLDYAKK 233
K TTPDVVF F F+T FGGG+++GFA++YD+LDYAKK
Sbjct: 46 KMYKTTPDVVFVFGFKTQFGGGKTTGFAMVYDSLDYAKK 84
>sp|P02377|RS24_XENLA 40S ribosomal protein S24 (S19)
Length = 132
Score = 79.3 bits (194), Expect = 3e-15
Identities = 37/51 (72%), Positives = 42/51 (82%)
Frame = +2
Query: 2 KTRKFLTNKLLQRKQMVVDVLHPGRATVPKTEIREHLAKMYNNNSRCCFCF 154
+TRKF+TN+LLQRKQMV+DVLHPG+ATVPKTEIRE LAKMY F F
Sbjct: 8 RTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVF 58
Score = 62.0 bits (149), Expect = 4e-10
Identities = 26/39 (66%), Positives = 33/39 (84%)
Frame = +3
Query: 117 KCTTTTPDVVFAFHFRTNFGGGRSSGFALIYDTLDYAKK 233
K TTPDV+F F FRT+FGGG+++GF +IYD+LDYAKK
Sbjct: 46 KMYKTTPDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKK 84
>sp|P62850|RS24_RAT 40S ribosomal protein S24
sp|P62849|RS24_MOUSE 40S ribosomal protein S24
sp|P62848|RS24_MESAU 40S ribosomal protein S24 (Ribosomal protein S19)
sp|P62847|RS24_HUMAN 40S ribosomal protein S24
Length = 133
Score = 79.3 bits (194), Expect = 3e-15
Identities = 37/51 (72%), Positives = 42/51 (82%)
Frame = +2
Query: 2 KTRKFLTNKLLQRKQMVVDVLHPGRATVPKTEIREHLAKMYNNNSRCCFCF 154
+TRKF+TN+LLQRKQMV+DVLHPG+ATVPKTEIRE LAKMY F F
Sbjct: 8 RTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVF 58
Score = 62.0 bits (149), Expect = 4e-10
Identities = 26/39 (66%), Positives = 33/39 (84%)
Frame = +3
Query: 117 KCTTTTPDVVFAFHFRTNFGGGRSSGFALIYDTLDYAKK 233
K TTPDV+F F FRT+FGGG+++GF +IYD+LDYAKK
Sbjct: 46 KMYKTTPDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKK 84
>sp|O59865|RS24B_SCHPO 40S ribosomal protein S24-B
Length = 134
Score = 74.7 bits (182), Expect = 6e-14
Identities = 34/54 (62%), Positives = 43/54 (79%)
Frame = +2
Query: 2 KTRKFLTNKLLQRKQMVVDVLHPGRATVPKTEIREHLAKMYNNNSRCCFCFPLQ 163
+TRKF+TN+LLQRKQMVVD+LHPG+A + K EIRE LA+MY +S C F L+
Sbjct: 8 RTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKTDSECVQAFGLR 61
Score = 47.0 bits (110), Expect = 1e-05
Identities = 22/36 (61%), Positives = 27/36 (75%)
Frame = +3
Query: 129 TTPDVVFAFHFRTNFGGGRSSGFALIYDTLDYAKKF 236
T + V AF RT+FGGGRS+GFALIYD+ + KKF
Sbjct: 50 TDSECVQAFGLRTHFGGGRSTGFALIYDSTESMKKF 85
>sp|Q962Q6|RS24_SPOFR 40S ribosomal protein S24
Length = 132
Score = 69.3 bits (168), Expect = 3e-12
Identities = 34/51 (66%), Positives = 38/51 (74%)
Frame = +2
Query: 2 KTRKFLTNKLLQRKQMVVDVLHPGRATVPKTEIREHLAKMYNNNSRCCFCF 154
+TRKF+TN+LL RKQMV DVLHPG+ TV KTEIRE LAKMY F F
Sbjct: 9 RTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVF 59
Score = 65.5 bits (158), Expect = 4e-11
Identities = 30/40 (75%), Positives = 33/40 (82%)
Frame = +3
Query: 117 KCTTTTPDVVFAFHFRTNFGGGRSSGFALIYDTLDYAKKF 236
K TPDVVF F F+TNFGGG+S+GFALIYDTLD AKKF
Sbjct: 47 KMYKVTPDVVFVFGFKTNFGGGKSTGFALIYDTLDLAKKF 86
>sp|O13784|RS24A_SCHPO 40S ribosomal protein S24-A
Length = 134
Score = 67.0 bits (162), Expect = 1e-11
Identities = 29/54 (53%), Positives = 41/54 (75%)
Frame = +2
Query: 2 KTRKFLTNKLLQRKQMVVDVLHPGRATVPKTEIREHLAKMYNNNSRCCFCFPLQ 163
+TRKF+TN+LLQRKQMVVD+LHPG+A + K ++RE L +MY ++ F L+
Sbjct: 8 RTRKFMTNRLLQRKQMVVDILHPGKANISKNDLREKLGQMYKTDASAVQAFGLR 61
Score = 44.3 bits (103), Expect = 9e-05
Identities = 20/36 (55%), Positives = 26/36 (72%)
Frame = +3
Query: 129 TTPDVVFAFHFRTNFGGGRSSGFALIYDTLDYAKKF 236
T V AF RT++GGGR++GFALIYD ++ KKF
Sbjct: 50 TDASAVQAFGLRTHYGGGRTTGFALIYDDVEAMKKF 85
>sp|Q9SS17|RS24_ARATH 40S ribosomal protein S24
Length = 133
Score = 64.3 bits (155), Expect = 8e-11
Identities = 28/41 (68%), Positives = 35/41 (85%)
Frame = +2
Query: 2 KTRKFLTNKLLQRKQMVVDVLHPGRATVPKTEIREHLAKMY 124
+TRKF+TN+LL RKQ V+DVLHPGRA V K E++E LA+MY
Sbjct: 9 RTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMY 49
Score = 55.5 bits (132), Expect = 4e-08
Identities = 23/34 (67%), Positives = 29/34 (85%)
Frame = +3
Query: 135 PDVVFAFHFRTNFGGGRSSGFALIYDTLDYAKKF 236
P+ +F F FRT+FGGG+SSGF LIYDT++ AKKF
Sbjct: 54 PNAIFVFKFRTHFGGGKSSGFGLIYDTVESAKKF 87
>sp|P14249|RS24_RHIRA 40S ribosomal protein S24
Length = 148
Score = 63.5 bits (153), Expect = 1e-10
Identities = 29/41 (70%), Positives = 34/41 (82%)
Frame = +2
Query: 2 KTRKFLTNKLLQRKQMVVDVLHPGRATVPKTEIREHLAKMY 124
+TRKFLTN+LLQRKQMVVDV+HPG A V K E+R + KMY
Sbjct: 27 RTRKFLTNRLLQRKQMVVDVIHPGLANVSKDELRSKIGKMY 67
Score = 43.9 bits (102), Expect = 1e-04
Identities = 18/33 (54%), Positives = 26/33 (78%)
Frame = +3
Query: 138 DVVFAFHFRTNFGGGRSSGFALIYDTLDYAKKF 236
+VV F F+T+FGGG+++GFALIYD ++ K F
Sbjct: 72 EVVSVFGFKTHFGGGKTTGFALIYDNVEALKNF 104
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,053,208
Number of Sequences: 369166
Number of extensions: 520627
Number of successful extensions: 1693
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1693
length of database: 68,354,980
effective HSP length: 49
effective length of database: 59,302,965
effective search space used: 1719785985
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)