Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_G14
(604 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O88767|PARK7_RAT Protein DJ-1 (Contraception-associated ... 117 2e-26
sp|Q99LX0|PARK7_MOUSE Protein DJ-1 116 4e-26
sp|Q99497|PARK7_HUMAN Protein DJ-1 (Oncogene DJ1) 115 9e-26
sp|Q10356|YDB3_SCHPO Hypothetical protein C22E12.03c in chr... 94 3e-19
sp|Q46948|THIJ_ECOLI Protein thiJ 92 1e-18
sp|P55880|THIJ_SALTY Protein thiJ 89 1e-17
sp|O06006|YRAA_BACSU Hypothetical protein yraA 84 4e-16
sp|Q58377|Y967_METJA Hypothetical protein MJ0967 77 3e-14
sp|Q5HN59|Y1413_STAEQ Hypothetical protein SERP1413 74 3e-13
sp|Q49YS0|Y918_STAS1 Hypothetical protein SSP0918 73 6e-13
>sp|O88767|PARK7_RAT Protein DJ-1 (Contraception-associated protein 1) (CAP1 protein)
(Fertility protein SP22)
Length = 189
Score = 117 bits (293), Expect = 2e-26
Identities = 65/165 (39%), Positives = 94/165 (56%), Gaps = 2/165 (1%)
Frame = +3
Query: 18 DVLSRGGIDVVIVGMEGSGNVKLAHKTVIVVEKSLADVKTT-LYDALIIPGGMGGVKALS 194
D++ R GI V + G+ G V+ + VI + SL + KT YD +++PGG G + LS
Sbjct: 24 DIMRRAGIKVTVAGLAGKDPVQCSRDVVICPDTSLEEAKTQGPYDVVVLPGGNLGAQNLS 83
Query: 195 ANENVKEMLYNHQKNKKVIGAICAGPLVLSAFGVAAGSTLTSYPSVKDQ-LTSADYKYKE 371
+ VKE+L + K +I AICAGP L A V G +TS+P KD+ + + Y Y E
Sbjct: 84 ESALVKEILKEQENRKGLIAAICAGPTALLAHEVGFGCKVTSHPLAKDKMMNGSHYSYSE 143
Query: 372 ERVVVDRNLVTSRGPGTAVEFGLKLVEVLKGADAVKGLAEQMLVK 506
RV D ++TSRGPGT+ EF L +VE L G D + +++K
Sbjct: 144 SRVEKDGLILTSRGPGTSFEFALAIVEALSGKDMANQVKAPLVLK 188
>sp|Q99LX0|PARK7_MOUSE Protein DJ-1
Length = 189
Score = 116 bits (291), Expect = 4e-26
Identities = 65/165 (39%), Positives = 94/165 (56%), Gaps = 2/165 (1%)
Frame = +3
Query: 18 DVLSRGGIDVVIVGMEGSGNVKLAHKTVIVVEKSLADVKTT-LYDALIIPGGMGGVKALS 194
DV+ R GI V + G+ G V+ + +I + SL D KT YD +++PGG G + LS
Sbjct: 24 DVMRRAGIKVTVAGLAGKDPVQCSRDVMICPDTSLEDAKTQGPYDVVVLPGGNLGAQNLS 83
Query: 195 ANENVKEMLYNHQKNKKVIGAICAGPLVLSAFGVAAGSTLTSYPSVKDQ-LTSADYKYKE 371
+ VKE+L + K +I AICAGP L A V G +T++P KD+ + + Y Y E
Sbjct: 84 ESPMVKEILKEQESRKGLIAAICAGPTALLAHEVGFGCKVTTHPLAKDKMMNGSHYSYSE 143
Query: 372 ERVVVDRNLVTSRGPGTAVEFGLKLVEVLKGADAVKGLAEQMLVK 506
RV D ++TSRGPGT+ EF L +VE L G D + +++K
Sbjct: 144 SRVEKDGLILTSRGPGTSFEFALAIVEALVGKDMANQVKAPLVLK 188
>sp|Q99497|PARK7_HUMAN Protein DJ-1 (Oncogene DJ1)
Length = 189
Score = 115 bits (288), Expect = 9e-26
Identities = 64/165 (38%), Positives = 93/165 (56%), Gaps = 2/165 (1%)
Frame = +3
Query: 18 DVLSRGGIDVVIVGMEGSGNVKLAHKTVIVVEKSLADVKTT-LYDALIIPGGMGGVKALS 194
DV+ R GI V + G+ G V+ + VI + SL D K YD +++PGG G + LS
Sbjct: 24 DVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLS 83
Query: 195 ANENVKEMLYNHQKNKKVIGAICAGPLVLSAFGVAAGSTLTSYPSVKDQ-LTSADYKYKE 371
+ VKE+L + K +I AICAGP L A + GS +T++P KD+ + Y Y E
Sbjct: 84 ESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSE 143
Query: 372 ERVVVDRNLVTSRGPGTAVEFGLKLVEVLKGADAVKGLAEQMLVK 506
RV D ++TSRGPGT+ EF L +VE L G + + +++K
Sbjct: 144 NRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLK 188
>sp|Q10356|YDB3_SCHPO Hypothetical protein C22E12.03c in chromosome I
Length = 191
Score = 93.6 bits (231), Expect = 3e-19
Identities = 57/150 (38%), Positives = 83/150 (55%), Gaps = 6/150 (4%)
Frame = +3
Query: 39 IDVVIVGMEGSGNVKLAHKTVIVVEKSLADVKTT-----LYDALIIPGGMGGVKALSANE 203
ID V VG VK++ + +S ++ + YD IIPGG G K LS
Sbjct: 31 IDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSADDFAKQYDIAIIPGGGLGAKTLSTTP 90
Query: 204 NVKEMLYN-HQKNKKVIGAICAGPLVLSAFGVAAGSTLTSYPSVKDQLTSADYKYKEERV 380
V++++ ++K K IG ICAG L G+ +T +PSV+ QL YKY ++ V
Sbjct: 91 FVQQVVKEFYKKPNKWIGMICAGTLTAKTSGLP-NKQITGHPSVRGQLEEGGYKYLDQPV 149
Query: 381 VVDRNLVTSRGPGTAVEFGLKLVEVLKGAD 470
V++ NL+TS+GPGTA+ FGLKL+E + D
Sbjct: 150 VLEENLITSQGPGTAMLFGLKLLEQVASKD 179
>sp|Q46948|THIJ_ECOLI Protein thiJ
Length = 196
Score = 92.0 bits (227), Expect = 1e-18
Identities = 51/171 (29%), Positives = 98/171 (57%), Gaps = 5/171 (2%)
Frame = +3
Query: 6 VATSDVLSRGGIDVVIVGMEGSGNVKL--AHKTVIVVEKSLADVKTTLYDALIIPGGMGG 179
V T D+L RGGI V + GN+ + + ++ + L +V YD +++PGG+ G
Sbjct: 19 VTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKG 78
Query: 180 VKALSANENVKEMLYNHQKNKKVIGAICAGPL-VLSAFGVAAGSTLTSYPSVKDQLTSAD 356
+ + + E + ++ +++ AICA P VL + +T +P++KD++ +
Sbjct: 79 AECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLKDKIPAE- 137
Query: 357 YKYKEERVVVDRN--LVTSRGPGTAVEFGLKLVEVLKGADAVKGLAEQMLV 503
++ ++RVV D L+TS+GPGTA++FGLK++++L G + +A Q+++
Sbjct: 138 -QWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLVGREKAHEVASQLVM 187
>sp|P55880|THIJ_SALTY Protein thiJ
Length = 196
Score = 88.6 bits (218), Expect = 1e-17
Identities = 50/171 (29%), Positives = 97/171 (56%), Gaps = 5/171 (2%)
Frame = +3
Query: 6 VATSDVLSRGGIDVVIVGMEGSGNVKL--AHKTVIVVEKSLADVKTTLYDALIIPGGMGG 179
V T D+L RGGI V + GN+ + + ++ + L +V YD +++PGG+ G
Sbjct: 19 VTTIDLLVRGGIHVTTASVASDGNLTIVCSRGVKLLADAPLVEVADGDYDIIVLPGGIKG 78
Query: 180 VKALSANENVKEMLYNHQKNKKVIGAICAGPL-VLSAFGVAAGSTLTSYPSVKDQLTSAD 356
+ + + E + ++ +++ AICA VL + +T +P++KD++ +
Sbjct: 79 AECFRDSPLLVETVKQFHRSGRIVAAICAAAATVLVPHDIFPIGNMTGFPALKDKIPAE- 137
Query: 357 YKYKEERVVVDRN--LVTSRGPGTAVEFGLKLVEVLKGADAVKGLAEQMLV 503
++ ++RVV D L+TS+GPGTA++FGLK++++L G + +A Q+++
Sbjct: 138 -QWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLAGREKAHEVASQLVM 187
>sp|O06006|YRAA_BACSU Hypothetical protein yraA
Length = 169
Score = 83.6 bits (205), Expect = 4e-16
Identities = 49/142 (34%), Positives = 74/142 (52%)
Frame = +3
Query: 36 GIDVVIVGMEGSGNVKLAHKTVIVVEKSLADVKTTLYDALIIPGGMGGVKALSANENVKE 215
G VV + +E V H + ++K+++DV + +DAL+IPGG L A++ E
Sbjct: 29 GYSVVAIDLEAGKEVTGKHGEKVKIDKAISDVDASDFDALLIPGGFSP-DLLRADDRPGE 87
Query: 216 MLYNHQKNKKVIGAICAGPLVLSAFGVAAGSTLTSYPSVKDQLTSADYKYKEERVVVDRN 395
+NKK + AIC GP VL + G +T Y S++ L +A YK+ VVV N
Sbjct: 88 FAKAFVENKKPVFAICHGPQVLIDTDLLKGKDITGYRSIRKDLINAGANYKDAEVVVSHN 147
Query: 396 LVTSRGPGTAVEFGLKLVEVLK 461
+VTSR P F + + +LK
Sbjct: 148 IVTSRTPDDLEAFNRESLNLLK 169
>sp|Q58377|Y967_METJA Hypothetical protein MJ0967
Length = 205
Score = 77.4 bits (189), Expect = 3e-14
Identities = 42/122 (34%), Positives = 71/122 (58%), Gaps = 2/122 (1%)
Frame = +3
Query: 102 IVVEKSLADVKTTLYDALIIPGGMGGVKALSANENVKEMLYNHQKNKKVIGAICAGPLVL 281
I VEK++ DV Y A++I GG+G + L N + E++ KV+ AIC P+VL
Sbjct: 80 ITVEKTIYDVNPDDYVAIVIVGGIGSKEYLWNNTKLIELVKEFYNKNKVVSAICLSPVVL 139
Query: 282 SAFGVAAGSTLTSYPSVK--DQLTSADYKYKEERVVVDRNLVTSRGPGTAVEFGLKLVEV 455
+ G+ G T YP+ + ++L A Y++ VVVD N++T++ P A FGL++++
Sbjct: 140 ARAGILKGKKATVYPAPEAIEELKKAGAIYEDRGVVVDGNVITAKSPDYARLFGLEVLKA 199
Query: 456 LK 461
++
Sbjct: 200 IE 201
>sp|Q5HN59|Y1413_STAEQ Hypothetical protein SERP1413
Length = 172
Score = 73.9 bits (180), Expect = 3e-13
Identities = 49/154 (31%), Positives = 73/154 (47%), Gaps = 1/154 (0%)
Frame = +3
Query: 3 VVATSDVLSRGGIDVVIVGMEGSGNVKLAHKTVIVVEKSLADVKTTLYDALIIPGGMGGV 182
+ + + L G + ++G + V H + V+ S+AD K YDAL+IPGG
Sbjct: 18 LTSPKEALENAGFETEVIGDTANHEVVGKHGEKVTVDVSIADAKPENYDALLIPGGFSPD 77
Query: 183 KALSANENVKEMLYNH-QKNKKVIGAICAGPLVLSAFGVAAGSTLTSYPSVKDQLTSADY 359
E + KN AIC GPLVL G T+T +V+ L++A
Sbjct: 78 HLRGDEEGRYGTFAKYFTKNDVPTFAICHGPLVLVDTDDLKGRTITGVINVRKDLSNAGA 137
Query: 360 KYKEERVVVDRNLVTSRGPGTAVEFGLKLVEVLK 461
+E VVVD N+VTSR P +F ++V+ L+
Sbjct: 138 NVVDESVVVDNNIVTSRVPDDLDDFNREIVKKLE 171
>sp|Q49YS0|Y918_STAS1 Hypothetical protein SSP0918
Length = 172
Score = 72.8 bits (177), Expect = 6e-13
Identities = 47/153 (30%), Positives = 74/153 (48%), Gaps = 1/153 (0%)
Frame = +3
Query: 3 VVATSDVLSRGGIDVVIVGMEGSGNVKLAHKTVIVVEKSLADVKTTLYDALIIPGGMGGV 182
+ + + + G + V++G + + V H T + V+ S+AD K +D L+IPGG
Sbjct: 18 LTSPKEAIEEAGHETVVIGDQANSEVVGKHGTKVAVDVSIADAKPEDFDGLLIPGGFSPD 77
Query: 183 KALSANENVKEMLYNH-QKNKKVIGAICAGPLVLSAFGVAAGSTLTSYPSVKDQLTSADY 359
E + KN AIC GP +L G TLT+ +V+ L +A
Sbjct: 78 HLRGDAEGRYGTFAKYFTKNDVPAFAICHGPQILIDTDDLNGRTLTAVLNVRKDLANAGA 137
Query: 360 KYKEERVVVDRNLVTSRGPGTAVEFGLKLVEVL 458
+ +E VVVD+N+VTSR P +F ++V L
Sbjct: 138 QVVDESVVVDKNIVTSRTPDDLDDFNREIVNQL 170
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,765,950
Number of Sequences: 369166
Number of extensions: 1150061
Number of successful extensions: 3579
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3556
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4650991475
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)