Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_G11
(567 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O73723|ARP3_FUGRU Actin-like protein 3 (Actin-related pr... 218 8e-57
sp|Q99JY9|ARP3_MOUSE Actin-like protein 3 (Actin-related pr... 218 1e-56
sp|P61157|ARP3_BOVIN Actin-like protein 3 (Actin-related pr... 218 1e-56
sp|P32392|ARP3_DROME Actin-like protein 3 (Actin-related pr... 212 6e-55
sp|P53490|ARP3_ACACA Actin-like protein 3 (Actin-related pr... 205 7e-53
sp|Q61WW9|ARP3_CAEBR Actin-like protein 3 (Actin-related pr... 203 3e-52
sp|Q9N4I0|ARP3_CAEEL Actin-like protein 3 (Actin-related pr... 202 4e-52
sp|P42528|ARP3_DICDI Actin-like protein 3 (Actin-related pr... 194 1e-49
sp|P47117|ARP3_YEAST Actin-like protein 3 (Actin-related pr... 151 1e-36
sp|P78712|ARP3_NEUCR Actin-like protein 3 (Actin-related pr... 148 1e-35
>sp|O73723|ARP3_FUGRU Actin-like protein 3 (Actin-related protein 3)
Length = 418
Score = 218 bits (555), Expect = 8e-57
Identities = 100/142 (70%), Positives = 119/142 (83%)
Frame = +2
Query: 2 EKFLGPEVFFRPEFVNADFQTSISDVVDTVIQSCPIDSRRPLYNNIVLSGGSSMFKHLDR 181
E+FLGPE+FF PEF N DF IS+VVD VIQ+CPID RRPLY NIVLSGGS+MF+ R
Sbjct: 274 ERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGR 333
Query: 182 RIQRDIKKMVDFRLKLTEENSHGKLKPTPIDVKVVSHSMQRYAVWFGGALLASSDDFYTA 361
R+QRD+K+ VD RLK++EE S GKLKP PIDV+V++H MQRYAVWFGG++LAS+ +FY
Sbjct: 334 RLQRDLKRTVDARLKMSEELSGGKLKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQV 393
Query: 362 AHTKKQYDEIGPSICRHNPVFG 427
HTKK Y+EIGPSICRHNPVFG
Sbjct: 394 CHTKKDYEEIGPSICRHNPVFG 415
>sp|Q99JY9|ARP3_MOUSE Actin-like protein 3 (Actin-related protein 3)
Length = 418
Score = 218 bits (554), Expect = 1e-56
Identities = 100/142 (70%), Positives = 119/142 (83%)
Frame = +2
Query: 2 EKFLGPEVFFRPEFVNADFQTSISDVVDTVIQSCPIDSRRPLYNNIVLSGGSSMFKHLDR 181
E+FLGPE+FF PEF N DF IS+VVD VIQ+CPID RRPLY NIVLSGGS+MF+ R
Sbjct: 274 ERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGR 333
Query: 182 RIQRDIKKMVDFRLKLTEENSHGKLKPTPIDVKVVSHSMQRYAVWFGGALLASSDDFYTA 361
R+QRD+K+ VD RLKL+EE S G+LKP PIDV+V++H MQRYAVWFGG++LAS+ +FY
Sbjct: 334 RLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQV 393
Query: 362 AHTKKQYDEIGPSICRHNPVFG 427
HTKK Y+EIGPSICRHNPVFG
Sbjct: 394 CHTKKDYEEIGPSICRHNPVFG 415
>sp|P61157|ARP3_BOVIN Actin-like protein 3 (Actin-related protein 3) (Actin-2)
sp|P61158|ARP3_HUMAN Actin-like protein 3 (Actin-related protein 3)
sp|Q5R8R1|ARP3_PONPY Actin-like protein 3 (Actin-related protein 3)
Length = 418
Score = 218 bits (554), Expect = 1e-56
Identities = 100/142 (70%), Positives = 119/142 (83%)
Frame = +2
Query: 2 EKFLGPEVFFRPEFVNADFQTSISDVVDTVIQSCPIDSRRPLYNNIVLSGGSSMFKHLDR 181
E+FLGPE+FF PEF N DF IS+VVD VIQ+CPID RRPLY NIVLSGGS+MF+ R
Sbjct: 274 ERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGR 333
Query: 182 RIQRDIKKMVDFRLKLTEENSHGKLKPTPIDVKVVSHSMQRYAVWFGGALLASSDDFYTA 361
R+QRD+K+ VD RLKL+EE S G+LKP PIDV+V++H MQRYAVWFGG++LAS+ +FY
Sbjct: 334 RLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQV 393
Query: 362 AHTKKQYDEIGPSICRHNPVFG 427
HTKK Y+EIGPSICRHNPVFG
Sbjct: 394 CHTKKDYEEIGPSICRHNPVFG 415
>sp|P32392|ARP3_DROME Actin-like protein 3 (Actin-related protein 3) (Actin-like protein
66B) (Actin-2)
Length = 418
Score = 212 bits (539), Expect = 6e-55
Identities = 95/142 (66%), Positives = 117/142 (82%)
Frame = +2
Query: 2 EKFLGPEVFFRPEFVNADFQTSISDVVDTVIQSCPIDSRRPLYNNIVLSGGSSMFKHLDR 181
E+FLGPE+FF PEF N DF +S++VD VIQ+CPID RRPLYNNIVLSGGS+MFK R
Sbjct: 274 ERFLGPEIFFHPEFSNPDFTIPLSEIVDNVIQNCPIDVRRPLYNNIVLSGGSTMFKDFGR 333
Query: 182 RIQRDIKKMVDFRLKLTEENSHGKLKPTPIDVKVVSHSMQRYAVWFGGALLASSDDFYTA 361
R+QRDIK+ VD RL+++E S G++KP PIDV+V++H MQRYAVWFGG++LAS+ +FY
Sbjct: 334 RLQRDIKRSVDTRLRISENLSEGRIKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQV 393
Query: 362 AHTKKQYDEIGPSICRHNPVFG 427
HTK Y+E GPSICRHNPVFG
Sbjct: 394 CHTKAAYEEYGPSICRHNPVFG 415
>sp|P53490|ARP3_ACACA Actin-like protein 3 (Actin-related protein 3)
Length = 427
Score = 205 bits (521), Expect = 7e-53
Identities = 92/142 (64%), Positives = 116/142 (81%)
Frame = +2
Query: 2 EKFLGPEVFFRPEFVNADFQTSISDVVDTVIQSCPIDSRRPLYNNIVLSGGSSMFKHLDR 181
E+FLGPE+FF PE ++DF T + VVD IQSCPID+RR LY NIVLSGGS+MFK +
Sbjct: 282 ERFLGPEIFFNPEIFSSDFLTPLPKVVDETIQSCPIDTRRGLYKNIVLSGGSTMFKDFGK 341
Query: 182 RIQRDIKKMVDFRLKLTEENSHGKLKPTPIDVKVVSHSMQRYAVWFGGALLASSDDFYTA 361
R+QRDIK+ VD+R+K +EE S G++K +DVKV+SH MQR+AVWFGG++LAS+ +FY
Sbjct: 342 RLQRDIKRAVDYRIKRSEELSQGRIKSKAVDVKVISHHMQRFAVWFGGSMLASTPEFYKV 401
Query: 362 AHTKKQYDEIGPSICRHNPVFG 427
HTK+QYDE+GPSICRHNPVFG
Sbjct: 402 CHTKQQYDEVGPSICRHNPVFG 423
>sp|Q61WW9|ARP3_CAEBR Actin-like protein 3 (Actin-related protein 3)
Length = 426
Score = 203 bits (516), Expect = 3e-52
Identities = 92/142 (64%), Positives = 116/142 (81%)
Frame = +2
Query: 2 EKFLGPEVFFRPEFVNADFQTSISDVVDTVIQSCPIDSRRPLYNNIVLSGGSSMFKHLDR 181
E+FLGPE+FF PEF N DF T ISD +DT+IQ CPID RR LY NIVLSGGS+MFK R
Sbjct: 282 ERFLGPEIFFHPEFCNPDFTTPISDTIDTLIQQCPIDVRRGLYENIVLSGGSTMFKDFAR 341
Query: 182 RIQRDIKKMVDFRLKLTEENSHGKLKPTPIDVKVVSHSMQRYAVWFGGALLASSDDFYTA 361
++QRD+K++ D RL+++E S G+LKP PIDV+V+SH MQRYAVWFGG++LAS+ +FY
Sbjct: 342 KLQRDVKRLSDARLQMSETLSGGRLKPKPIDVQVISHKMQRYAVWFGGSMLASTSEFYQV 401
Query: 362 AHTKKQYDEIGPSICRHNPVFG 427
+H+K +Y E GPSICR+NPVFG
Sbjct: 402 SHSKAEYMEKGPSICRYNPVFG 423
>sp|Q9N4I0|ARP3_CAEEL Actin-like protein 3 (Actin-related protein 3)
Length = 425
Score = 202 bits (515), Expect = 4e-52
Identities = 92/142 (64%), Positives = 116/142 (81%)
Frame = +2
Query: 2 EKFLGPEVFFRPEFVNADFQTSISDVVDTVIQSCPIDSRRPLYNNIVLSGGSSMFKHLDR 181
E+FLGPE+FF PEF N +F T ISD +DT+IQ CPID RR LY NIVLSGGS+MFK R
Sbjct: 281 ERFLGPEIFFHPEFCNPEFTTPISDTIDTLIQQCPIDVRRGLYENIVLSGGSTMFKDFAR 340
Query: 182 RIQRDIKKMVDFRLKLTEENSHGKLKPTPIDVKVVSHSMQRYAVWFGGALLASSDDFYTA 361
++QRD+K++ D RL+++E S G+LKP PIDV+V+SH MQRYAVWFGG++LAS+ +FY
Sbjct: 341 KLQRDVKRLSDGRLQMSETLSGGRLKPKPIDVQVISHKMQRYAVWFGGSMLASTSEFYQV 400
Query: 362 AHTKKQYDEIGPSICRHNPVFG 427
+HTK +Y E GPSICR+NPVFG
Sbjct: 401 SHTKAEYMERGPSICRYNPVFG 422
>sp|P42528|ARP3_DICDI Actin-like protein 3 (Actin-related protein 3)
Length = 418
Score = 194 bits (493), Expect = 1e-49
Identities = 89/142 (62%), Positives = 111/142 (78%)
Frame = +2
Query: 2 EKFLGPEVFFRPEFVNADFQTSISDVVDTVIQSCPIDSRRPLYNNIVLSGGSSMFKHLDR 181
E+FLGPE+FF PE ++D+ T + VVD IQSCPID RR LY NIVLSGGS+MFK +
Sbjct: 274 ERFLGPELFFNPEIASSDYLTPLPKVVDDTIQSCPIDCRRGLYKNIVLSGGSTMFKDFGK 333
Query: 182 RIQRDIKKMVDFRLKLTEENSHGKLKPTPIDVKVVSHSMQRYAVWFGGALLASSDDFYTA 361
R+QRD+K+ VD+R+K +EE S GK+K P+ V V+SH+MQRYAVWFGG++LAS+ +FY
Sbjct: 334 RLQRDVKRSVDYRIKRSEELSGGKIKAVPLAVNVISHNMQRYAVWFGGSMLASTPEFYNV 393
Query: 362 AHTKKQYDEIGPSICRHNPVFG 427
HTK QYDEIGPSICR N V G
Sbjct: 394 CHTKAQYDEIGPSICRFNTVIG 415
>sp|P47117|ARP3_YEAST Actin-like protein 3 (Actin-related protein 3) (Actin-like protein
ARP3)
Length = 449
Score = 151 bits (381), Expect = 1e-36
Identities = 76/141 (53%), Positives = 98/141 (69%)
Frame = +2
Query: 2 EKFLGPEVFFRPEFVNADFQTSISDVVDTVIQSCPIDSRRPLYNNIVLSGGSSMFKHLDR 181
E+FL PE+FF PE ++DF T + VVD IQ+CPID R+ LYNNIVLSGGS+MFK R
Sbjct: 308 ERFLAPEIFFNPEIASSDFLTPLPTVVDQTIQACPIDVRKGLYNNIVLSGGSTMFKDFGR 367
Query: 182 RIQRDIKKMVDFRLKLTEENSHGKLKPTPIDVKVVSHSMQRYAVWFGGALLASSDDFYTA 361
R+QRD+K +V+ R+ +E S K T +DV V+SH QR AVWFGG+LLA + +F
Sbjct: 368 RLQRDLKSIVNNRIAQSELLS--GTKSTGVDVSVISHRKQRNAVWFGGSLLAQTAEFKGY 425
Query: 362 AHTKKQYDEIGPSICRHNPVF 424
HTKK Y+E GP I R+ +F
Sbjct: 426 CHTKKDYEEYGPEIVRNFSLF 446
>sp|P78712|ARP3_NEUCR Actin-like protein 3 (Actin-related protein 3)
Length = 439
Score = 148 bits (373), Expect = 1e-35
Identities = 73/142 (51%), Positives = 98/142 (69%)
Frame = +2
Query: 2 EKFLGPEVFFRPEFVNADFQTSISDVVDTVIQSCPIDSRRPLYNNIVLSGGSSMFKHLDR 181
E+F+ PE+FF PE ++DF T + VVD VIQS PID RR LY NIVLSGGS+++K R
Sbjct: 294 ERFMAPEIFFNPEIYSSDFLTPLPVVVDGVIQSSPIDVRRGLYKNIVLSGGSTLYKDFGR 353
Query: 182 RIQRDIKKMVDFRLKLTEENSHGKLKPTPIDVKVVSHSMQRYAVWFGGALLASSDDFYTA 361
R+QRDIK++VD R+K +E S G K +DV+V++H QR+ WFGG+LL + +F +
Sbjct: 354 RLQRDIKQLVDTRIKASEVRS-GGAKSGGLDVQVITHKRQRHGPWFGGSLLGQTPEFRSY 412
Query: 362 AHTKKQYDEIGPSICRHNPVFG 427
HTK +Y E GPSI R + G
Sbjct: 413 CHTKAEYQEYGPSIVRRFALLG 434
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,886,566
Number of Sequences: 369166
Number of extensions: 1386578
Number of successful extensions: 4274
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3807
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4127973360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)