Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_F09
(771 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P21531|RL3_RAT 60S ribosomal protein L3 (L4) 357 2e-98
sp|O16797|RL3_DROME 60S ribosomal protein L3 356 4e-98
sp|P27659|RL3_MOUSE 60S ribosomal protein L3 (J1 protein) 354 1e-97
sp|P39023|RL3_HUMAN 60S ribosomal protein L3 (HIV-1 TAR RNA... 354 2e-97
sp|P49149|RL3_TOXCA 60S ribosomal protein L3 352 8e-97
sp|P39872|RL3_BOVIN 60S ribosomal protein L3 350 2e-96
sp|Q9NBK4|RL3_CAEBR 60S ribosomal protein L3 339 4e-93
sp|P50880|RL3_CAEEL 60S ribosomal protein L3 338 1e-92
sp|Q92901|RL3L_HUMAN 60S ribosomal protein L3-like 327 3e-89
sp|P36584|RL3B_SCHPO 60S ribosomal protein L3-B 300 3e-81
>sp|P21531|RL3_RAT 60S ribosomal protein L3 (L4)
Length = 403
Score = 357 bits (917), Expect = 2e-98
Identities = 167/248 (67%), Positives = 203/248 (81%)
Frame = +3
Query: 27 MSHRKFSAPRHGSLGFLPXXXXXXXXXXXXSFPVDRPSDPVHLTSFLSYKAGCTQVVREL 206
MSHRKFSAPRHGSLGFLP SFP D PS PVHLT+FL YKAG T +VRE+
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV 60
Query: 207 NSQTNKTNNGKEVSDQVTILETPPMMIVGVVGYIETPRGLRTFKTVWGEHLSEECRRRFY 386
+ +K N KEV + VTI+ETPPM++VG+VGY+ETPRGLRTFKTV+ EH+S+EC+RRFY
Sbjct: 61 DRPGSKVNK-KEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFY 119
Query: 387 KNWYKSKKKAFTRSSKKWTEDRGKKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKKAH 566
KNW+KSKKKAFT+ KKW +D GKK +E DFN MK+YC+VIR+IAHTQM++L RQKKAH
Sbjct: 120 KNWHKSKKKAFTKYCKKWQDDTGKKQLEKDFNSMKKYCQVIRIIAHTQMRLLPLRQKKAH 179
Query: 567 ITEIQLNGGTVSNKVDWAREHLEKQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKK 746
+ EIQ+NGGTV+ K+DWARE LE+QV ++ VF +EMID IG+TKGKG++GVTSRWHTKK
Sbjct: 180 LMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKK 239
Query: 747 LQRKTHKG 770
L RKTH+G
Sbjct: 240 LPRKTHRG 247
>sp|O16797|RL3_DROME 60S ribosomal protein L3
Length = 416
Score = 356 bits (913), Expect = 4e-98
Identities = 167/248 (67%), Positives = 196/248 (79%)
Frame = +3
Query: 27 MSHRKFSAPRHGSLGFLPXXXXXXXXXXXXSFPVDRPSDPVHLTSFLSYKAGCTQVVREL 206
MSHRKFSAPRHGS+ F P +FP D S PVHLT F+ YKAG T +VRE
Sbjct: 1 MSHRKFSAPRHGSMAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREA 60
Query: 207 NSQTNKTNNGKEVSDQVTILETPPMMIVGVVGYIETPRGLRTFKTVWGEHLSEECRRRFY 386
+ +K N KEV + VT+LETPPM++VG VGYIETP GLR VW +HLSEECRRRFY
Sbjct: 61 DRPGSKINK-KEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFY 119
Query: 387 KNWYKSKKKAFTRSSKKWTEDRGKKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKKAH 566
KNWYKSKKKAFT++SKKWT+D GKK IE DF KM RYCKVIRVIAH+Q++++ QRQKKAH
Sbjct: 120 KNWYKSKKKAFTKASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKAH 179
Query: 567 ITEIQLNGGTVSNKVDWAREHLEKQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKK 746
+ EIQLNGG++ +KV WAREHLEK + +SNVF +EMIDC+G+TKGKGF+GVTSRWHTKK
Sbjct: 180 VMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTKK 239
Query: 747 LQRKTHKG 770
L RKTHKG
Sbjct: 240 LPRKTHKG 247
>sp|P27659|RL3_MOUSE 60S ribosomal protein L3 (J1 protein)
Length = 403
Score = 354 bits (909), Expect = 1e-97
Identities = 166/248 (66%), Positives = 202/248 (81%)
Frame = +3
Query: 27 MSHRKFSAPRHGSLGFLPXXXXXXXXXXXXSFPVDRPSDPVHLTSFLSYKAGCTQVVREL 206
MSHRKFSAPRHGSLGFLP SFP D S PVHLT+FL YKAG T +VRE+
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDASKPVHLTAFLGYKAGMTHIVREV 60
Query: 207 NSQTNKTNNGKEVSDQVTILETPPMMIVGVVGYIETPRGLRTFKTVWGEHLSEECRRRFY 386
+ +K N KEV + VTI+ETPPM++VG+VGY+ETPRGLRTFKTV+ EH+S+EC+RRFY
Sbjct: 61 DRPGSKVNK-KEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFY 119
Query: 387 KNWYKSKKKAFTRSSKKWTEDRGKKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKKAH 566
KNW+KSKKKAFT+ KKW +D GKK +E DFN MK+YC+VIR+IAHTQM++L RQKKAH
Sbjct: 120 KNWHKSKKKAFTKYCKKWQDDTGKKQLEKDFNSMKKYCQVIRIIAHTQMRLLPLRQKKAH 179
Query: 567 ITEIQLNGGTVSNKVDWAREHLEKQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKK 746
+ EIQ+NGGTV+ K+DWARE LE+QV ++ VF +EMID IG+TKGKG++GVTSRWHTKK
Sbjct: 180 LMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKK 239
Query: 747 LQRKTHKG 770
L RKTH+G
Sbjct: 240 LPRKTHRG 247
>sp|P39023|RL3_HUMAN 60S ribosomal protein L3 (HIV-1 TAR RNA binding protein B)
(TARBP-B)
Length = 403
Score = 354 bits (908), Expect = 2e-97
Identities = 166/248 (66%), Positives = 203/248 (81%)
Frame = +3
Query: 27 MSHRKFSAPRHGSLGFLPXXXXXXXXXXXXSFPVDRPSDPVHLTSFLSYKAGCTQVVREL 206
MSHRKFSAPRHGSLGFLP SFP D PS PVHLT+FL YKAG T +VRE+
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV 60
Query: 207 NSQTNKTNNGKEVSDQVTILETPPMMIVGVVGYIETPRGLRTFKTVWGEHLSEECRRRFY 386
+ +K N KEV + VTI+ETPPM++VG+VGY+ETPRGLRTFKTV+ EH+S+EC+RRFY
Sbjct: 61 DRPGSKVNK-KEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFY 119
Query: 387 KNWYKSKKKAFTRSSKKWTEDRGKKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKKAH 566
KNW+KSKKKAFT+ KKW ++ GKK +E DF+ MK+YC+VIRVIAHTQM++L RQKKAH
Sbjct: 120 KNWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAH 179
Query: 567 ITEIQLNGGTVSNKVDWAREHLEKQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKK 746
+ EIQ+NGGTV+ K+DWARE LE+QV ++ VF +EMID IG+TKGKG++GVTSRWHTKK
Sbjct: 180 LMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKK 239
Query: 747 LQRKTHKG 770
L RKTH+G
Sbjct: 240 LPRKTHRG 247
>sp|P49149|RL3_TOXCA 60S ribosomal protein L3
Length = 402
Score = 352 bits (902), Expect = 8e-97
Identities = 163/248 (65%), Positives = 198/248 (79%)
Frame = +3
Query: 27 MSHRKFSAPRHGSLGFLPXXXXXXXXXXXXSFPVDRPSDPVHLTSFLSYKAGCTQVVREL 206
MSHRKFSAPRHGS+GF P +FP D P+ P+HLT+F+++KAG T +VRE+
Sbjct: 1 MSHRKFSAPRHGSMGFTPKKRSKRHRGKVKAFPKDDPTKPIHLTAFIAFKAGMTHIVREV 60
Query: 207 NSQTNKTNNGKEVSDQVTILETPPMMIVGVVGYIETPRGLRTFKTVWGEHLSEECRRRFY 386
+ +K N KEV + VTI E PPM+IVG+VGYI+TPRG R FKTVW EHLSE+CR RFY
Sbjct: 61 DKPGSKVNK-KEVVEAVTIFEAPPMVIVGIVGYIDTPRGPRQFKTVWAEHLSEDCRGRFY 119
Query: 387 KNWYKSKKKAFTRSSKKWTEDRGKKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKKAH 566
KNW+ SKKKAF + +KKW ++ G+K IE D NKMK+YC IRVIAHTQMK++ R+KKAH
Sbjct: 120 KNWHTSKKKAFQKHAKKWQDEDGRKSIEADLNKMKKYCSKIRVIAHTQMKVMKHREKKAH 179
Query: 567 ITEIQLNGGTVSNKVDWAREHLEKQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKK 746
I EIQ+NGGTV+ KVDWAREHLEKQV + +VF+ +EMIDCIG+TKGKGF+GVTSRWHTKK
Sbjct: 180 IMEIQINGGTVAEKVDWAREHLEKQVPVDSVFAQDEMIDCIGVTKGKGFKGVTSRWHTKK 239
Query: 747 LQRKTHKG 770
L RKTHKG
Sbjct: 240 LPRKTHKG 247
>sp|P39872|RL3_BOVIN 60S ribosomal protein L3
Length = 403
Score = 350 bits (898), Expect = 2e-96
Identities = 165/248 (66%), Positives = 201/248 (81%)
Frame = +3
Query: 27 MSHRKFSAPRHGSLGFLPXXXXXXXXXXXXSFPVDRPSDPVHLTSFLSYKAGCTQVVREL 206
MSHRKFSAPRHGSLGFLP SFP D S PVHLT+FL YKAG T +VRE+
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV 60
Query: 207 NSQTNKTNNGKEVSDQVTILETPPMMIVGVVGYIETPRGLRTFKTVWGEHLSEECRRRFY 386
+ +K N KEV + VTI+ETPPM+IVG+VGY+ETPRGLRTFKT++ EH+S+EC+RRFY
Sbjct: 61 DRPGSKVNK-KEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFY 119
Query: 387 KNWYKSKKKAFTRSSKKWTEDRGKKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKKAH 566
KNW+KSKKKAFT+ KKW + GKK +E DF+ MK+YC+VIRVIAHTQM++L RQKKAH
Sbjct: 120 KNWHKSKKKAFTKYCKKWQDADGKKQLERDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAH 179
Query: 567 ITEIQLNGGTVSNKVDWAREHLEKQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKK 746
+ E+Q+NGGTV+ K+DWARE LE+QV +S VF +EMID IG+TKGKG++GVTSRWHTKK
Sbjct: 180 LMEVQVNGGTVAEKLDWARERLEQQVPVSQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKK 239
Query: 747 LQRKTHKG 770
L RKTH+G
Sbjct: 240 LPRKTHRG 247
>sp|Q9NBK4|RL3_CAEBR 60S ribosomal protein L3
Length = 401
Score = 339 bits (870), Expect = 4e-93
Identities = 159/248 (64%), Positives = 191/248 (77%)
Frame = +3
Query: 27 MSHRKFSAPRHGSLGFLPXXXXXXXXXXXXSFPVDRPSDPVHLTSFLSYKAGCTQVVREL 206
MSHRKFSAPRHG +GF P +FP D S P+HLT+FL YKAG T +VR++
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDASKPIHLTAFLGYKAGMTHIVRDV 60
Query: 207 NSQTNKTNNGKEVSDQVTILETPPMMIVGVVGYIETPRGLRTFKTVWGEHLSEECRRRFY 386
+ +K N KEV + V+I+ETPPM+I GV GYI+TP+G R T+W EHLSEE RRRFY
Sbjct: 61 DKPGSKVNK-KEVVEAVSIIETPPMVIAGVTGYIDTPQGPRALTTIWAEHLSEEARRRFY 119
Query: 387 KNWYKSKKKAFTRSSKKWTEDRGKKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKKAH 566
NW KSKKKAFT+ +KKW ++ GKKLIE DF K+K+YC IRVIAHTQMK+L +RQKKAH
Sbjct: 120 SNWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAH 179
Query: 567 ITEIQLNGGTVSNKVDWAREHLEKQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKK 746
+ EIQ+NGGT+ KVDWAREHLEKQ+ + VFS +EMID IG+TKG GF+GVTSRWHTKK
Sbjct: 180 LVEIQINGGTIEQKVDWAREHLEKQIQVDTVFSQDEMIDTIGVTKGHGFKGVTSRWHTKK 239
Query: 747 LQRKTHKG 770
L RKTHKG
Sbjct: 240 LPRKTHKG 247
>sp|P50880|RL3_CAEEL 60S ribosomal protein L3
Length = 401
Score = 338 bits (866), Expect = 1e-92
Identities = 158/248 (63%), Positives = 191/248 (77%)
Frame = +3
Query: 27 MSHRKFSAPRHGSLGFLPXXXXXXXXXXXXSFPVDRPSDPVHLTSFLSYKAGCTQVVREL 206
MSHRKFSAPRHG +GF P +FP D S P+HLT+FL YKAG T +VR++
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60
Query: 207 NSQTNKTNNGKEVSDQVTILETPPMMIVGVVGYIETPRGLRTFKTVWGEHLSEECRRRFY 386
+ +K N KEV + VTI+ETPPM+I GV GY++TP+G R T+W EHLSEE RRRFY
Sbjct: 61 DKPGSKVNK-KEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFY 119
Query: 387 KNWYKSKKKAFTRSSKKWTEDRGKKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKKAH 566
NW KSKKKAFT+ +KKW ++ GKKLIE DF K+K+YC IRVIAHTQMK+L +RQKKAH
Sbjct: 120 SNWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAH 179
Query: 567 ITEIQLNGGTVSNKVDWAREHLEKQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKK 746
+ EIQ+NGGT+ KVDWAREHLEKQV + VF+ +EMID IG+T+G GF+GVTSRWHTKK
Sbjct: 180 LVEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHGFKGVTSRWHTKK 239
Query: 747 LQRKTHKG 770
L RKTHKG
Sbjct: 240 LPRKTHKG 247
>sp|Q92901|RL3L_HUMAN 60S ribosomal protein L3-like
Length = 407
Score = 327 bits (837), Expect = 3e-89
Identities = 157/248 (63%), Positives = 194/248 (78%)
Frame = +3
Query: 27 MSHRKFSAPRHGSLGFLPXXXXXXXXXXXXSFPVDRPSDPVHLTSFLSYKAGCTQVVREL 206
MSHRKFSAPRHG LGFLP ++P D PS PVHLT+FL YKAG T +RE+
Sbjct: 1 MSHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREV 60
Query: 207 NSQTNKTNNGKEVSDQVTILETPPMMIVGVVGYIETPRGLRTFKTVWGEHLSEECRRRFY 386
+ K + +EV + VTI+ETPP+++VGVVGY+ TPRGLR+FKT++ EHLS+ECRRRFY
Sbjct: 61 HRPGLKISKREEV-EAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFY 119
Query: 387 KNWYKSKKKAFTRSSKKWTEDRGKKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKKAH 566
K+W+KSKKKAFT++ K+W + GKK ++ DF MK+YCKVIRVI HTQMK+L RQKKAH
Sbjct: 120 KDWHKSKKKAFTKACKRWRDTDGKKQLQKDFAAMKKYCKVIRVIVHTQMKLLPFRQKKAH 179
Query: 567 ITEIQLNGGTVSNKVDWAREHLEKQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKK 746
I EIQLNGGTV+ KV WA+ LEKQV + +VFS +E+ID I +TKG+G +GVTSRWHTKK
Sbjct: 180 IMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTSRWHTKK 239
Query: 747 LQRKTHKG 770
L RKTHKG
Sbjct: 240 LPRKTHKG 247
>sp|P36584|RL3B_SCHPO 60S ribosomal protein L3-B
Length = 388
Score = 300 bits (768), Expect = 3e-81
Identities = 143/248 (57%), Positives = 184/248 (74%)
Frame = +3
Query: 27 MSHRKFSAPRHGSLGFLPXXXXXXXXXXXXSFPVDRPSDPVHLTSFLSYKAGCTQVVREL 206
MSH KF PRHGSLGFLP +FP D S PVHLT+FL YKAG T +VR+L
Sbjct: 1 MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDL 60
Query: 207 NSQTNKTNNGKEVSDQVTILETPPMMIVGVVGYIETPRGLRTFKTVWGEHLSEECRRRFY 386
+ +K + +E+ + VTI+ETPPM++VGVVGY+ETPRGLR+ TVW EHLSEE +RRFY
Sbjct: 61 DRPGSKMHK-REILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFY 119
Query: 387 KNWYKSKKKAFTRSSKKWTEDRGKKLIELDFNKMKRYCKVIRVIAHTQMKMLNQRQKKAH 566
KNW+KSKKKAFT+ +KK+ E + I + ++K+YC V+RV+AHTQ++ QKKAH
Sbjct: 120 KNWFKSKKKAFTKYAKKYAEST--QSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAH 177
Query: 567 ITEIQLNGGTVSNKVDWAREHLEKQVSISNVFSPNEMIDCIGITKGKGFEGVTSRWHTKK 746
+ EIQ+NGG+V++KV+WAREH EK V I + F NEMID IG+T+GKG EG T+RW TK+
Sbjct: 178 LMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKR 237
Query: 747 LQRKTHKG 770
L RKTH+G
Sbjct: 238 LPRKTHRG 245
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,164,589
Number of Sequences: 369166
Number of extensions: 1540550
Number of successful extensions: 4597
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4537
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7163732800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)