Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_F08
(464 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P31018|EF1A_ENTHI Elongation factor 1-alpha (EF-1-alpha) 79 7e-15
sp|P25166|EF1A_STYLE Elongation factor 1-alpha (EF-1-alpha) 78 1e-14
sp|Q01520|EF1A_PODAN Elongation factor 1-alpha (EF-1-alpha) 77 2e-14
sp|Q71V39|EF1A2_RABIT Elongation factor 1-alpha 2 (EF-1-alp... 77 2e-14
sp|P13549|EF1A0_XENLA Elongation factor 1-alpha, somatic fo... 77 2e-14
sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alp... 77 2e-14
sp|P29520|EF1A_BOMMO Elongation factor 1-alpha (EF-1-alpha) 77 2e-14
sp|Q90835|EF1A_CHICK Elongation factor 1-alpha 1 (EF-1-alph... 77 2e-14
sp|P62631|EF1A2_MOUSE Elongation factor 1-alpha 2 (EF-1-alp... 77 2e-14
sp|P27592|EF1A_ONCVO Elongation factor 1-alpha (EF-1-alpha) 77 2e-14
>sp|P31018|EF1A_ENTHI Elongation factor 1-alpha (EF-1-alpha)
Length = 430
Score = 78.6 bits (192), Expect = 7e-15
Identities = 35/39 (89%), Positives = 38/39 (97%)
Frame = +2
Query: 347 MPSDKTHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTI 463
MP +KTHINIVVIGHVDSGKST+TGHLIYKCGGID+RTI
Sbjct: 1 MPKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDQRTI 39
>sp|P25166|EF1A_STYLE Elongation factor 1-alpha (EF-1-alpha)
Length = 446
Score = 77.8 bits (190), Expect = 1e-14
Identities = 34/39 (87%), Positives = 37/39 (94%)
Frame = +2
Query: 347 MPSDKTHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTI 463
MP +K H+N+VVIGHVDSGKSTSTGHLIYKCGGIDKRTI
Sbjct: 1 MPKEKNHLNLVVIGHVDSGKSTSTGHLIYKCGGIDKRTI 39
>sp|Q01520|EF1A_PODAN Elongation factor 1-alpha (EF-1-alpha)
Length = 460
Score = 76.6 bits (187), Expect = 2e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2
Query: 356 DKTHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTI 463
DKTHIN+VVIGHVDSGKST+TGHLIYKCGGIDKRTI
Sbjct: 5 DKTHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTI 40
>sp|Q71V39|EF1A2_RABIT Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
sp|Q05639|EF1A2_HUMAN Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
Length = 463
Score = 76.6 bits (187), Expect = 2e-14
Identities = 35/39 (89%), Positives = 37/39 (94%)
Frame = +2
Query: 347 MPSDKTHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTI 463
M +KTHINIVVIGHVDSGKST+TGHLIYKCGGIDKRTI
Sbjct: 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTI 39
>sp|P13549|EF1A0_XENLA Elongation factor 1-alpha, somatic form (EF-1-alpha-S)
Length = 462
Score = 76.6 bits (187), Expect = 2e-14
Identities = 35/39 (89%), Positives = 37/39 (94%)
Frame = +2
Query: 347 MPSDKTHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTI 463
M +KTHINIVVIGHVDSGKST+TGHLIYKCGGIDKRTI
Sbjct: 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTI 39
>sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62630|EF1A1_RAT Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62629|EF1A1_CRIGR Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 76.6 bits (187), Expect = 2e-14
Identities = 35/39 (89%), Positives = 37/39 (94%)
Frame = +2
Query: 347 MPSDKTHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTI 463
M +KTHINIVVIGHVDSGKST+TGHLIYKCGGIDKRTI
Sbjct: 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTI 39
>sp|P29520|EF1A_BOMMO Elongation factor 1-alpha (EF-1-alpha)
Length = 463
Score = 76.6 bits (187), Expect = 2e-14
Identities = 35/39 (89%), Positives = 37/39 (94%)
Frame = +2
Query: 347 MPSDKTHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTI 463
M +KTHINIVVIGHVDSGKST+TGHLIYKCGGIDKRTI
Sbjct: 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTI 39
>sp|Q90835|EF1A_CHICK Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor Tu)
(EF-Tu)
Length = 462
Score = 76.6 bits (187), Expect = 2e-14
Identities = 35/39 (89%), Positives = 37/39 (94%)
Frame = +2
Query: 347 MPSDKTHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTI 463
M +KTHINIVVIGHVDSGKST+TGHLIYKCGGIDKRTI
Sbjct: 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTI 39
>sp|P62631|EF1A2_MOUSE Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
sp|P62632|EF1A2_RAT Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
Length = 463
Score = 76.6 bits (187), Expect = 2e-14
Identities = 35/39 (89%), Positives = 37/39 (94%)
Frame = +2
Query: 347 MPSDKTHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTI 463
M +KTHINIVVIGHVDSGKST+TGHLIYKCGGIDKRTI
Sbjct: 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTI 39
>sp|P27592|EF1A_ONCVO Elongation factor 1-alpha (EF-1-alpha)
Length = 464
Score = 76.6 bits (187), Expect = 2e-14
Identities = 35/39 (89%), Positives = 37/39 (94%)
Frame = +2
Query: 347 MPSDKTHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTI 463
M +KTHINIVVIGHVDSGKST+TGHLIYKCGGIDKRTI
Sbjct: 1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTI 39
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,532,132
Number of Sequences: 369166
Number of extensions: 760292
Number of successful extensions: 2870
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2870
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2633927485
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)