Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_F01
(378 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q00215|ACTC_STYPL Actin, cytoplasmic 179 2e-45
sp|P53470|ACT1_SCHMA Actin-1 179 2e-45
sp|P53458|ACT5_DIPDE Actin-5 179 2e-45
sp|P17126|ACT_HYDAT Actin, non-muscle 6.2 177 5e-45
sp|P92179|ACTC_BIOGL Actin, cytoplasmic 177 5e-45
sp|P69005|ACTD_STRPU Actin, cytoskeletal IIB >gi|67462096|s... 177 5e-45
sp|P10990|ACT1_STRFN Actin-15A 177 5e-45
sp|Q964D9|ACTC_HELTI Actin, cytoplasmic 177 5e-45
sp|Q964E0|ACTC_BIOTE Actin, cytoplasmic 177 5e-45
sp|Q964E1|ACTC_BIOOB Actin, cytoplasmic 177 5e-45
>sp|Q00215|ACTC_STYPL Actin, cytoplasmic
Length = 375
Score = 179 bits (454), Expect = 2e-45
Identities = 86/90 (95%), Positives = 88/90 (97%)
Frame = +2
Query: 17 DVDIRKDLYANIVLSGGSTMYPGIADRMQKEISALAPPTMKIKIVAPPERKYSVWIGGSI 196
DVDIRKDLYAN VLSGG+TMYPGIADRMQKEISALAPPTMKIKI+APPERKYSVWIGGSI
Sbjct: 286 DVDIRKDLYANTVLSGGTTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSI 345
Query: 197 LASLSTFQQMWISKQEYDESGPGIVHRKCF 286
LASLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 346 LASLSTFQQMWISKQEYDESGPSIVHRKCF 375
>sp|P53470|ACT1_SCHMA Actin-1
Length = 376
Score = 179 bits (453), Expect = 2e-45
Identities = 87/90 (96%), Positives = 88/90 (97%)
Frame = +2
Query: 17 DVDIRKDLYANIVLSGGSTMYPGIADRMQKEISALAPPTMKIKIVAPPERKYSVWIGGSI 196
DVDIRKDLY+N VLSGGSTMYPGIADRMQKEISALAP TMKIKIVAPPERKYSVWIGGSI
Sbjct: 287 DVDIRKDLYSNTVLSGGSTMYPGIADRMQKEISALAPSTMKIKIVAPPERKYSVWIGGSI 346
Query: 197 LASLSTFQQMWISKQEYDESGPGIVHRKCF 286
LASLSTFQQMWISKQEYDESGPGIVHRKCF
Sbjct: 347 LASLSTFQQMWISKQEYDESGPGIVHRKCF 376
>sp|P53458|ACT5_DIPDE Actin-5
Length = 371
Score = 179 bits (453), Expect = 2e-45
Identities = 87/90 (96%), Positives = 88/90 (97%)
Frame = +2
Query: 17 DVDIRKDLYANIVLSGGSTMYPGIADRMQKEISALAPPTMKIKIVAPPERKYSVWIGGSI 196
DVDIRKDLYAN VLSGGSTMYPGI+DRMQKEISALAP TMKIKIVAPPERKYSVWIGGSI
Sbjct: 282 DVDIRKDLYANTVLSGGSTMYPGISDRMQKEISALAPSTMKIKIVAPPERKYSVWIGGSI 341
Query: 197 LASLSTFQQMWISKQEYDESGPGIVHRKCF 286
LASLSTFQQMWISKQEYDESGPGIVHRKCF
Sbjct: 342 LASLSTFQQMWISKQEYDESGPGIVHRKCF 371
>sp|P17126|ACT_HYDAT Actin, non-muscle 6.2
Length = 376
Score = 177 bits (450), Expect = 5e-45
Identities = 85/90 (94%), Positives = 88/90 (97%)
Frame = +2
Query: 17 DVDIRKDLYANIVLSGGSTMYPGIADRMQKEISALAPPTMKIKIVAPPERKYSVWIGGSI 196
DVDIRKDLYAN VLSGG+TM+PGIADRMQKEISALAPPTMKIKI+APPERKYSVWIGGSI
Sbjct: 287 DVDIRKDLYANTVLSGGTTMFPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSI 346
Query: 197 LASLSTFQQMWISKQEYDESGPGIVHRKCF 286
LASLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 347 LASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|P92179|ACTC_BIOGL Actin, cytoplasmic
Length = 376
Score = 177 bits (450), Expect = 5e-45
Identities = 85/90 (94%), Positives = 88/90 (97%)
Frame = +2
Query: 17 DVDIRKDLYANIVLSGGSTMYPGIADRMQKEISALAPPTMKIKIVAPPERKYSVWIGGSI 196
DVDIRKDLYAN VLSGGSTM+PGIADRMQKEI+ALAPPTMKIKI+APPERKYSVWIGGSI
Sbjct: 287 DVDIRKDLYANTVLSGGSTMFPGIADRMQKEITALAPPTMKIKIIAPPERKYSVWIGGSI 346
Query: 197 LASLSTFQQMWISKQEYDESGPGIVHRKCF 286
LASLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 347 LASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|P69005|ACTD_STRPU Actin, cytoskeletal IIB
sp|P69004|ACT2_STRFN Actin-15B
Length = 376
Score = 177 bits (450), Expect = 5e-45
Identities = 85/90 (94%), Positives = 88/90 (97%)
Frame = +2
Query: 17 DVDIRKDLYANIVLSGGSTMYPGIADRMQKEISALAPPTMKIKIVAPPERKYSVWIGGSI 196
DVDIRKDLYAN VLSGGSTM+PGIADRMQKEI+ALAPPTMKIKI+APPERKYSVWIGGSI
Sbjct: 287 DVDIRKDLYANTVLSGGSTMFPGIADRMQKEITALAPPTMKIKIIAPPERKYSVWIGGSI 346
Query: 197 LASLSTFQQMWISKQEYDESGPGIVHRKCF 286
LASLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 347 LASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|P10990|ACT1_STRFN Actin-15A
Length = 376
Score = 177 bits (450), Expect = 5e-45
Identities = 85/90 (94%), Positives = 88/90 (97%)
Frame = +2
Query: 17 DVDIRKDLYANIVLSGGSTMYPGIADRMQKEISALAPPTMKIKIVAPPERKYSVWIGGSI 196
DVDIRKDLYAN VLSGGSTM+PGIADRMQKEI+ALAPPTMKIKI+APPERKYSVWIGGSI
Sbjct: 287 DVDIRKDLYANCVLSGGSTMFPGIADRMQKEITALAPPTMKIKIIAPPERKYSVWIGGSI 346
Query: 197 LASLSTFQQMWISKQEYDESGPGIVHRKCF 286
LASLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 347 LASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|Q964D9|ACTC_HELTI Actin, cytoplasmic
Length = 376
Score = 177 bits (450), Expect = 5e-45
Identities = 85/90 (94%), Positives = 88/90 (97%)
Frame = +2
Query: 17 DVDIRKDLYANIVLSGGSTMYPGIADRMQKEISALAPPTMKIKIVAPPERKYSVWIGGSI 196
DVDIRKDLYAN VLSGGSTM+PGIADRMQKEI+ALAPPTMKIKI+APPERKYSVWIGGSI
Sbjct: 287 DVDIRKDLYANTVLSGGSTMFPGIADRMQKEITALAPPTMKIKIIAPPERKYSVWIGGSI 346
Query: 197 LASLSTFQQMWISKQEYDESGPGIVHRKCF 286
LASLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 347 LASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|Q964E0|ACTC_BIOTE Actin, cytoplasmic
Length = 376
Score = 177 bits (450), Expect = 5e-45
Identities = 85/90 (94%), Positives = 88/90 (97%)
Frame = +2
Query: 17 DVDIRKDLYANIVLSGGSTMYPGIADRMQKEISALAPPTMKIKIVAPPERKYSVWIGGSI 196
DVDIRKDLYAN VLSGGSTM+PGIADRMQKEI+ALAPPTMKIKI+APPERKYSVWIGGSI
Sbjct: 287 DVDIRKDLYANTVLSGGSTMFPGIADRMQKEITALAPPTMKIKIIAPPERKYSVWIGGSI 346
Query: 197 LASLSTFQQMWISKQEYDESGPGIVHRKCF 286
LASLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 347 LASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|Q964E1|ACTC_BIOOB Actin, cytoplasmic
Length = 376
Score = 177 bits (450), Expect = 5e-45
Identities = 85/90 (94%), Positives = 88/90 (97%)
Frame = +2
Query: 17 DVDIRKDLYANIVLSGGSTMYPGIADRMQKEISALAPPTMKIKIVAPPERKYSVWIGGSI 196
DVDIRKDLYAN VLSGGSTM+PGIADRMQKEI+ALAPPTMKIKI+APPERKYSVWIGGSI
Sbjct: 287 DVDIRKDLYANTVLSGGSTMFPGIADRMQKEITALAPPTMKIKIIAPPERKYSVWIGGSI 346
Query: 197 LASLSTFQQMWISKQEYDESGPGIVHRKCF 286
LASLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 347 LASLSTFQQMWISKQEYDESGPSIVHRKCF 376
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,395,349
Number of Sequences: 369166
Number of extensions: 925510
Number of successful extensions: 2947
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2892
length of database: 68,354,980
effective HSP length: 92
effective length of database: 51,359,360
effective search space used: 1694858880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)