Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_E18
(164 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P13471|RS14_RAT 40S ribosomal protein S14 39 0.005
sp|P62264|RS14_MOUSE 40S ribosomal protein S14 >gi|50403752... 39 0.005
sp|Q8TVB9|RS11_METKA 30S ribosomal protein S11P 39 0.005
sp|O22584|RS14_LUPLU 40S ribosomal protein S14 39 0.005
sp|O28001|RS11_ARCFU 30S ribosomal protein S11P 39 0.005
sp|Q9CAX6|RS142_ARATH 40S ribosomal protein S14-2 38 0.006
sp|Q9SIH0|RS141_ARATH 40S ribosomal protein S14-1 38 0.006
sp|P42036|RS143_ARATH 40S ribosomal protein S14-3 38 0.006
sp|P62010|RS11_PYRAB 30S ribosomal protein S11P >gi|4842912... 38 0.006
sp|Q8U0E3|RS11_PYRFU 30S ribosomal protein S11P 38 0.006
>sp|P13471|RS14_RAT 40S ribosomal protein S14
Length = 151
Score = 38.5 bits (88), Expect = 0.005
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +2
Query: 47 SGMKIGRIEDVTPIPHDTT 103
SGMKIGRIEDVTPIP D+T
Sbjct: 122 SGMKIGRIEDVTPIPSDST 140
>sp|P62264|RS14_MOUSE 40S ribosomal protein S14
sp|P62263|RS14_HUMAN 40S ribosomal protein S14
sp|P62265|RS14_CRIGR 40S ribosomal protein S14
Length = 151
Score = 38.5 bits (88), Expect = 0.005
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +2
Query: 47 SGMKIGRIEDVTPIPHDTT 103
SGMKIGRIEDVTPIP D+T
Sbjct: 122 SGMKIGRIEDVTPIPSDST 140
>sp|Q8TVB9|RS11_METKA 30S ribosomal protein S11P
Length = 137
Score = 38.5 bits (88), Expect = 0.005
Identities = 16/19 (84%), Positives = 18/19 (94%)
Frame = +2
Query: 47 SGMKIGRIEDVTPIPHDTT 103
+G+KIGRIEDVTPIPHD T
Sbjct: 108 AGLKIGRIEDVTPIPHDGT 126
>sp|O22584|RS14_LUPLU 40S ribosomal protein S14
Length = 150
Score = 38.5 bits (88), Expect = 0.005
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +2
Query: 47 SGMKIGRIEDVTPIPHDTT 103
SGMKIGRIEDVTPIP D+T
Sbjct: 121 SGMKIGRIEDVTPIPSDST 139
>sp|O28001|RS11_ARCFU 30S ribosomal protein S11P
Length = 133
Score = 38.5 bits (88), Expect = 0.005
Identities = 16/19 (84%), Positives = 18/19 (94%)
Frame = +2
Query: 47 SGMKIGRIEDVTPIPHDTT 103
+G+KIGRIEDVTPIPHD T
Sbjct: 104 AGLKIGRIEDVTPIPHDGT 122
>sp|Q9CAX6|RS142_ARATH 40S ribosomal protein S14-2
Length = 150
Score = 38.1 bits (87), Expect = 0.006
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +2
Query: 47 SGMKIGRIEDVTPIPHDTT 103
SGMKIGRIEDVTPIP D+T
Sbjct: 121 SGMKIGRIEDVTPIPTDST 139
>sp|Q9SIH0|RS141_ARATH 40S ribosomal protein S14-1
Length = 150
Score = 38.1 bits (87), Expect = 0.006
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +2
Query: 47 SGMKIGRIEDVTPIPHDTT 103
SGMKIGRIEDVTPIP D+T
Sbjct: 121 SGMKIGRIEDVTPIPTDST 139
>sp|P42036|RS143_ARATH 40S ribosomal protein S14-3
Length = 150
Score = 38.1 bits (87), Expect = 0.006
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +2
Query: 47 SGMKIGRIEDVTPIPHDTT 103
SGMKIGRIEDVTPIP D+T
Sbjct: 121 SGMKIGRIEDVTPIPTDST 139
>sp|P62010|RS11_PYRAB 30S ribosomal protein S11P
sp|P62011|RS11_PYRHO 30S ribosomal protein S11P
Length = 137
Score = 38.1 bits (87), Expect = 0.006
Identities = 15/19 (78%), Positives = 18/19 (94%)
Frame = +2
Query: 47 SGMKIGRIEDVTPIPHDTT 103
+G+KIGR+EDVTPIPHD T
Sbjct: 108 AGLKIGRVEDVTPIPHDGT 126
>sp|Q8U0E3|RS11_PYRFU 30S ribosomal protein S11P
Length = 137
Score = 38.1 bits (87), Expect = 0.006
Identities = 15/19 (78%), Positives = 18/19 (94%)
Frame = +2
Query: 47 SGMKIGRIEDVTPIPHDTT 103
+G+KIGR+EDVTPIPHD T
Sbjct: 108 AGLKIGRVEDVTPIPHDGT 126
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,000,721
Number of Sequences: 369166
Number of extensions: 138967
Number of successful extensions: 483
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 68,354,980
effective HSP length: 27
effective length of database: 63,367,135
effective search space used: 1710912645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)