Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_E11
(405 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P54352|EAS_DROME Ethanolamine kinase (EK) (Easily shocke... 79 4e-15
sp|Q9HBU6|EKI1_HUMAN Ethanolamine kinase (EKI) 69 5e-12
sp|Q9D4V0|EKI1_MOUSE Ethanolamine kinase (EKI) 65 5e-11
sp|Q9Y259|CHKB_HUMAN Choline/ethanolamine kinase [Includes:... 52 3e-07
sp|O55229|CHKB_MOUSE Choline/ethanolamine kinase [Includes:... 50 1e-06
sp|Q01134|CHKA_RAT Choline kinase alpha (CK) (CHETK-alpha) 50 1e-06
sp|P35790|CHKA_HUMAN Choline kinase alpha (CK) (CHETK-alpha) 50 1e-06
sp|O54804|CHKA_MOUSE Choline kinase alpha (CK) (CHETK-alpha) 50 2e-06
sp|O54783|CHKB_RAT Choline/ethanolamine kinase [Includes: C... 48 6e-06
sp|Q89AW7|RNFD_BUCBP Electron transport complex protein rnfD 32 0.63
>sp|P54352|EAS_DROME Ethanolamine kinase (EK) (Easily shocked protein)
Length = 517
Score = 78.6 bits (192), Expect = 4e-15
Identities = 38/97 (39%), Positives = 57/97 (58%)
Frame = +3
Query: 6 YPNEVFQKNWIRQYLKILHNSSCANGSTQNGDVSTVSDKEIDHWYKMINKFSLASHLIWS 185
YP FQ W+R YL+ + S + + E++ Y +N+F+LASH+ W+
Sbjct: 426 YPKREFQLQWLRVYLE------------EYLQRSNIQNDEVELLYVQVNQFALASHIFWT 473
Query: 186 MWSIWQDVNSVINFNYVDYGILRWNHYLKKKDEFLSL 296
+WS+ Q +S I+F+YV Y LR+N YL +K EFLSL
Sbjct: 474 VWSLLQAEHSTIDFDYVGYAFLRYNEYLARKVEFLSL 510
>sp|Q9HBU6|EKI1_HUMAN Ethanolamine kinase (EKI)
Length = 452
Score = 68.6 bits (166), Expect = 5e-12
Identities = 32/98 (32%), Positives = 54/98 (55%)
Frame = +3
Query: 3 VYPNEVFQKNWIRQYLKILHNSSCANGSTQNGDVSTVSDKEIDHWYKMINKFSLASHLIW 182
+YP+ Q W+R YL+ G + V++KE++ + +N+F+LASH W
Sbjct: 359 LYPDRELQSQWLRAYLEAYKEFK--------GFGTEVTEKEVEILFIQVNQFALASHFFW 410
Query: 183 SMWSIWQDVNSVINFNYVDYGILRWNHYLKKKDEFLSL 296
+W++ Q S I F+++ Y I+R+N Y K K E +L
Sbjct: 411 GLWALIQAKYSTIEFDFLGYAIVRFNQYFKMKPEVTAL 448
>sp|Q9D4V0|EKI1_MOUSE Ethanolamine kinase (EKI)
Length = 412
Score = 65.1 bits (157), Expect = 5e-11
Identities = 31/98 (31%), Positives = 53/98 (54%)
Frame = +3
Query: 3 VYPNEVFQKNWIRQYLKILHNSSCANGSTQNGDVSTVSDKEIDHWYKMINKFSLASHLIW 182
+YP+ Q +R YL+ G S V++KE++ + +N+F+LASH W
Sbjct: 319 LYPDRELQGQCVRSYLEAYKE--------YKGFGSDVTEKEVETLFIQVNQFALASHFFW 370
Query: 183 SMWSIWQDVNSVINFNYVDYGILRWNHYLKKKDEFLSL 296
+W++ Q S I F+++ Y ++R+N Y K K E +L
Sbjct: 371 GLWALIQAKYSTIEFDFLGYAVVRFNQYFKMKPEVTAL 408
>sp|Q9Y259|CHKB_HUMAN Choline/ethanolamine kinase [Includes: Choline kinase beta (CK);
Ethanolamine kinase (EK)]
Length = 395
Score = 52.4 bits (124), Expect = 3e-07
Identities = 28/97 (28%), Positives = 50/97 (51%)
Frame = +3
Query: 6 YPNEVFQKNWIRQYLKILHNSSCANGSTQNGDVSTVSDKEIDHWYKMINKFSLASHLIWS 185
YP + Q ++IR YL + G T + + ++++ +++++LASH W
Sbjct: 303 YPTQEQQLHFIRHYL-----AEAKKGETLSQEEQRKLEEDL---LVEVSRYALASHFFWG 354
Query: 186 MWSIWQDVNSVINFNYVDYGILRWNHYLKKKDEFLSL 296
+WSI Q S I F Y+DY R+ Y ++K + S+
Sbjct: 355 LWSILQASMSTIEFGYLDYAQSRFQFYFQQKGQLTSV 391
>sp|O55229|CHKB_MOUSE Choline/ethanolamine kinase [Includes: Choline kinase beta (CK);
Ethanolamine kinase (EK)]
Length = 394
Score = 50.4 bits (119), Expect = 1e-06
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Frame = +3
Query: 6 YPNEVFQKNWIRQYLKILHNSSCANGSTQNGDVSTVSD--KEIDHWYKMINKFSLASHLI 179
YP Q ++IR YL Q G++ + + K + I+++SLASH
Sbjct: 303 YPTREQQLHFIRHYL----------AEVQKGEILSEEEQKKREEELLLEISRYSLASHFF 352
Query: 180 WSMWSIWQDVNSVINFNYVDYGILRWNHYLKKKDEFLS 293
W +WS Q S I F Y++Y R+ Y ++K + S
Sbjct: 353 WGLWSTLQASMSTIEFGYLEYAQSRFQFYFQQKGQLTS 390
>sp|Q01134|CHKA_RAT Choline kinase alpha (CK) (CHETK-alpha)
Length = 453
Score = 50.4 bits (119), Expect = 1e-06
Identities = 29/91 (31%), Positives = 46/91 (50%)
Frame = +3
Query: 6 YPNEVFQKNWIRQYLKILHNSSCANGSTQNGDVSTVSDKEIDHWYKMINKFSLASHLIWS 185
YP Q ++I YL N + S + +T D ++ +N+F+LASH +W
Sbjct: 365 YPTRKQQLHFISSYLTTFQNDFESLSSEEQS--ATKEDMLLE-----VNRFALASHFLWG 417
Query: 186 MWSIWQDVNSVINFNYVDYGILRWNHYLKKK 278
+WSI Q S I F Y++Y R++ Y +K
Sbjct: 418 LWSIVQAKISSIEFGYMEYAQARFDAYFDQK 448
>sp|P35790|CHKA_HUMAN Choline kinase alpha (CK) (CHETK-alpha)
Length = 457
Score = 50.4 bits (119), Expect = 1e-06
Identities = 30/91 (32%), Positives = 44/91 (48%)
Frame = +3
Query: 6 YPNEVFQKNWIRQYLKILHNSSCANGSTQNGDVSTVSDKEIDHWYKMINKFSLASHLIWS 185
YP + Q ++I YL N N ST+ + + +N+F+LASH +W
Sbjct: 369 YPTKKQQLHFISSYLPAFQNDF-ENLSTEEKSIIK------EEMLLEVNRFALASHFLWG 421
Query: 186 MWSIWQDVNSVINFNYVDYGILRWNHYLKKK 278
WSI Q S I F Y+DY R++ Y +K
Sbjct: 422 QWSIVQAKISSIEFGYMDYAQARFDAYFHQK 452
>sp|O54804|CHKA_MOUSE Choline kinase alpha (CK) (CHETK-alpha)
Length = 453
Score = 50.1 bits (118), Expect = 2e-06
Identities = 29/91 (31%), Positives = 46/91 (50%)
Frame = +3
Query: 6 YPNEVFQKNWIRQYLKILHNSSCANGSTQNGDVSTVSDKEIDHWYKMINKFSLASHLIWS 185
YP+ Q ++I YL N + S + +T D ++ +N+F+LASH +W
Sbjct: 365 YPSRKQQLHFISSYLTTFQNDFESLSSEEQ--FATKEDMLLE-----VNRFALASHFLWG 417
Query: 186 MWSIWQDVNSVINFNYVDYGILRWNHYLKKK 278
+WSI Q S I F Y++Y R+ Y +K
Sbjct: 418 LWSIVQAKISSIEFGYMEYAQARFEAYFDQK 448
>sp|O54783|CHKB_RAT Choline/ethanolamine kinase [Includes: Choline kinase beta (CK);
Ethanolamine kinase (EK)]
Length = 394
Score = 48.1 bits (113), Expect = 6e-06
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Frame = +3
Query: 6 YPNEVFQKNWIRQYLKILHNSSCANGSTQNGDVSTVSD--KEIDHWYKMINKFSLASHLI 179
YP Q +IR YL Q G+V + + K+ + I++++LASH
Sbjct: 303 YPTREQQLLFIRHYL----------AEVQKGEVLSEEEQKKQEEDLLIEISRYALASHFF 352
Query: 180 WSMWSIWQDVNSVINFNYVDYGILRWNHYLKKKDEFLS 293
W +WS Q S I F Y++Y R+ Y ++K + S
Sbjct: 353 WGLWSTLQASMSTIEFGYLEYAQSRFQFYFQQKGQLTS 390
>sp|Q89AW7|RNFD_BUCBP Electron transport complex protein rnfD
Length = 354
Score = 31.6 bits (70), Expect = 0.63
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Frame = +3
Query: 18 VFQKNWIRQYLKILHNSSCANGSTQNGDVSTVSDKEIDHWYKMINKFSLASHLIWSMWSI 197
+ NW Q NSS N N S + +I+H+Y +I++F + I +
Sbjct: 136 ILMTNWSFQ------NSSYFNLFDLNNTFSVIFCTDINHYYSLIDEFQMMYKFITQATPL 189
Query: 198 WQDVNSVINF-NYVD--YGILRWNHYLK 272
Q V++F N +D + + +N+Y K
Sbjct: 190 EQIRTHVLDFNNKIDNIFEFVNYNYYFK 217
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,221,924
Number of Sequences: 369166
Number of extensions: 857216
Number of successful extensions: 1901
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1899
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1809034200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)