Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_E05
(862 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Z0G0|GIPC_MOUSE RGS19-interacting protein 1 (GAIP C-te... 55 3e-07
sp|O14908|GIPC_HUMAN RGS19-interacting protein 1 (GAIP C-te... 55 3e-07
sp|Q9Z254|GIPC_RAT RGS19-interacting protein 1 (GAIP C-term... 55 3e-07
sp|Q9PKS8|Y384_CHLMU Hypothetical UPF0135 protein TC0384 31 3.9
sp|Q8X7Q1|DPO4_ECO57 DNA polymerase IV (Pol IV) 30 8.6
>sp|Q9Z0G0|GIPC_MOUSE RGS19-interacting protein 1 (GAIP C-terminus-interacting protein)
(RGS-GAIP-interacting protein) (Synectin) (SemaF
cytoplasmic domain associated protein 1) (SEMCAP-1)
Length = 333
Score = 55.1 bits (131), Expect = 3e-07
Identities = 21/52 (40%), Positives = 33/52 (63%)
Frame = +3
Query: 606 DAKYTQTILDIGKRVKNPSDFNEQMNDELGEFEFPSSLIFDFWGVITDAKAG 761
D + T++++GK +NP + E +++ LG+F FP +FD WG I DAK G
Sbjct: 280 DTELAATMVELGKDKRNPDELAEALDERLGDFAFPDEFVFDVWGAIGDAKVG 331
>sp|O14908|GIPC_HUMAN RGS19-interacting protein 1 (GAIP C-terminus-interacting protein)
(RGS-GAIP-interacting protein) (Tax interaction protein
2) (TIP-2)
Length = 333
Score = 55.1 bits (131), Expect = 3e-07
Identities = 21/52 (40%), Positives = 33/52 (63%)
Frame = +3
Query: 606 DAKYTQTILDIGKRVKNPSDFNEQMNDELGEFEFPSSLIFDFWGVITDAKAG 761
D + T++++GK +NP + E +++ LG+F FP +FD WG I DAK G
Sbjct: 280 DTELAATMVELGKDKRNPDELAEALDERLGDFAFPDEFVFDVWGAIGDAKVG 331
>sp|Q9Z254|GIPC_RAT RGS19-interacting protein 1 (GAIP C-terminus-interacting GIPC)
(RGS-GAIP-interacting protein) (GLUT1 C-terminal-binding
protein) (GLUT1CBP)
Length = 333
Score = 55.1 bits (131), Expect = 3e-07
Identities = 21/52 (40%), Positives = 33/52 (63%)
Frame = +3
Query: 606 DAKYTQTILDIGKRVKNPSDFNEQMNDELGEFEFPSSLIFDFWGVITDAKAG 761
D + T++++GK +NP + E +++ LG+F FP +FD WG I DAK G
Sbjct: 280 DTELAATMVELGKDKRNPDELAEALDERLGDFAFPDEFVFDVWGAIGDAKVG 331
>sp|Q9PKS8|Y384_CHLMU Hypothetical UPF0135 protein TC0384
Length = 251
Score = 31.2 bits (69), Expect = 3.9
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = -1
Query: 133 LMEERTSRLLGTEIQLVA---TIDAAQPMAVNWSRVKQVQWERI 11
++ +R RL+ IQL+A +DA + NW K + WER+
Sbjct: 79 MLYQRMQRLIENNIQLIAYHLPLDAHPEVGNNWKVAKDLGWERL 122
>sp|Q8X7Q1|DPO4_ECO57 DNA polymerase IV (Pol IV)
Length = 351
Score = 30.0 bits (66), Expect = 8.6
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = -1
Query: 835 SAHAYVSTDNIEFVVELVSLNDVRIPALASVITPQKSKIKLLGNSNSPNSSFICS-LKSE 659
S H + S I + +++++ A A V TP K K+ + N PN F+ + +
Sbjct: 112 SVHCHGSATLIAQEIRQTIFSELQLTASAGV-TPVKFLAKIASDMNKPNGQFVITPAEVS 170
Query: 658 GFLTRFPISRI 626
FL P+++I
Sbjct: 171 AFLQTLPLAKI 181
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,973,550
Number of Sequences: 369166
Number of extensions: 1894066
Number of successful extensions: 4071
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4069
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8534739105
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)