Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_D18
(878 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P13272|UCRI_BOVIN Ubiquinol-cytochrome c reductase iron-... 228 2e-59
sp|Q69BJ7|UCRI_SAISC Ubiquinol-cytochrome c reductase iron-... 228 2e-59
sp|Q69BJ8|UCRI_LAGLA Ubiquinol-cytochrome c reductase iron-... 226 6e-59
sp|Q69BJ9|UCRI_AOTAZ Ubiquinol-cytochrome c reductase iron-... 225 1e-58
sp|P20788|UCRI_RAT Ubiquinol-cytochrome c reductase iron-su... 222 1e-57
sp|Q69BK0|UCRI_COLPO Ubiquinol-cytochrome c reductase iron-... 221 2e-57
sp|Q69BK1|UCRI_CERAE Ubiquinol-cytochrome c reductase iron-... 221 2e-57
sp|Q69BK4|UCRI_GORGO Ubiquinol-cytochrome c reductase iron-... 221 2e-57
sp|Q9CR68|UCRI_MOUSE Ubiquinol-cytochrome c reductase iron-... 221 2e-57
sp|Q69BK5|UCRI_PANTR Ubiquinol-cytochrome c reductase iron-... 221 3e-57
>sp|P13272|UCRI_BOVIN Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP) [Contains:
Ubiquinol-cytochrome c reductase 8 kDa protein (Complex
III subunit IX)]
Length = 274
Score = 228 bits (581), Expect = 2e-59
Identities = 116/228 (50%), Positives = 151/228 (66%), Gaps = 1/228 (0%)
Frame = +1
Query: 124 EKIILDNSQSLLHGKLFKRNFKLWPSSVSVSLNGPMQVRLIHTEFCKVPEF-EYRREELK 300
E +LD +S+L + + P SVSLN P VR HT+ KVP+F +YRR E+
Sbjct: 39 ESPVLDLKRSVLCRESLRGQAAGRPLVASVSLNVPASVRYSHTDI-KVPDFSDYRRPEVL 97
Query: 301 PSTTIDRNTDVERRFPSYXXXXXXXXXXXXXXRDLVTAALSSMGPNAKTLSEASIEVDLS 480
ST + + R+ SY +++V+ +SSM +A L+ + IE+ LS
Sbjct: 98 DSTKSSKESSEARKGFSYLVTATTTVGVAYAAKNVVSQFVSSMSASADVLAMSKIEIKLS 157
Query: 481 SIPEGKSVVMKWRNKPLFVRHRTAEDIAREGAVNKADLRHPEDDSERVQKPEWLILIGIC 660
IPEGK++ KWR KPLFVRHRT ++I +E AV + LR P+ D ERV+KPEW+ILIG+C
Sbjct: 158 DIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVC 217
Query: 661 THLGCVPISNAGEYNGYYCPCHGSHYDGSGRIRKGPAPFNLEVPDYKF 804
THLGCVPI+NAG++ GYYCPCHGSHYD SGRIRKGPAP NLEVP Y+F
Sbjct: 218 THLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPSYEF 265
>sp|Q69BJ7|UCRI_SAISC Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
Length = 274
Score = 228 bits (581), Expect = 2e-59
Identities = 114/229 (49%), Positives = 147/229 (64%), Gaps = 1/229 (0%)
Frame = +1
Query: 124 EKIILDNSQSLLHGKLFKRNFKLWPSSVSVSLNGPMQVRLIHTEFCKVPEF-EYRREELK 300
E +LD + +L + P SV LN P VR HT+ KVP+F +YRR E+
Sbjct: 39 EPPVLDPKRPILSRESLSGQAARRPLVASVGLNVPASVRYSHTDI-KVPDFSDYRRSEVL 97
Query: 301 PSTTIDRNTDVERRFPSYXXXXXXXXXXXXXXRDLVTAALSSMGPNAKTLSEASIEVDLS 480
T R + R+ SY + +VT +SSM +A L+ + IE+ LS
Sbjct: 98 DKTKSSRESSDARKVFSYMVTATTAVGVTYAAKSIVTQFISSMSASADVLAMSKIEIKLS 157
Query: 481 SIPEGKSVVMKWRNKPLFVRHRTAEDIAREGAVNKADLRHPEDDSERVQKPEWLILIGIC 660
IPEGK++ KWR KPLFVRHRT ++I +E AV + LR P+ D +RV+KPEW+ILIG+C
Sbjct: 158 DIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWMILIGVC 217
Query: 661 THLGCVPISNAGEYNGYYCPCHGSHYDGSGRIRKGPAPFNLEVPDYKFI 807
THLGCVPI+NAG++ GYYCPCHGSHYD SGRIRKGPAP NLEVP Y+F+
Sbjct: 218 THLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPTYEFL 266
>sp|Q69BJ8|UCRI_LAGLA Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
Length = 274
Score = 226 bits (576), Expect = 6e-59
Identities = 114/228 (50%), Positives = 146/228 (64%), Gaps = 1/228 (0%)
Frame = +1
Query: 124 EKIILDNSQSLLHGKLFKRNFKLWPSSVSVSLNGPMQVRLIHTEFCKVPEF-EYRREELK 300
E +LD + +L + P SV LN P VR HT+ KVP+F +YRR E+
Sbjct: 39 EPPVLDPKRPILSRESLSGQAARRPLVASVGLNVPASVRYSHTDI-KVPDFSDYRRSEVL 97
Query: 301 PSTTIDRNTDVERRFPSYXXXXXXXXXXXXXXRDLVTAALSSMGPNAKTLSEASIEVDLS 480
T R + R+ SY + +VT +SSM +A L+ + IE+ LS
Sbjct: 98 DKTKSSRESSDARKGFSYLVTAATAVGVTYAAKSIVTQFVSSMSASADVLAMSKIEIKLS 157
Query: 481 SIPEGKSVVMKWRNKPLFVRHRTAEDIAREGAVNKADLRHPEDDSERVQKPEWLILIGIC 660
IPEGK++ KWR KPLFVRHRT ++I +E AV + LR P+ D +RV+KPEW+ILIG+C
Sbjct: 158 DIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWMILIGVC 217
Query: 661 THLGCVPISNAGEYNGYYCPCHGSHYDGSGRIRKGPAPFNLEVPDYKF 804
THLGCVPI+NAG++ GYYCPCHGSHYD SGRIRKGPAP NLEVP Y+F
Sbjct: 218 THLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPTYEF 265
>sp|Q69BJ9|UCRI_AOTAZ Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
Length = 274
Score = 225 bits (574), Expect = 1e-58
Identities = 116/230 (50%), Positives = 150/230 (65%), Gaps = 1/230 (0%)
Frame = +1
Query: 118 PKEKIILDNSQSLLHGKLFKRNFKLWPSSVSVSLNGPMQVRLIHTEFCKVPEF-EYRREE 294
PK I+ S+ L G+ +R P +V LN P VR HT+ KVP+F +YRR E
Sbjct: 45 PKRPIL---SRESLSGQAARR-----PLVATVGLNVPASVRYSHTDI-KVPDFSDYRRSE 95
Query: 295 LKPSTTIDRNTDVERRFPSYXXXXXXXXXXXXXXRDLVTAALSSMGPNAKTLSEASIEVD 474
+ +T R + R+ SY + +VT +SSM +A L+ + IE+
Sbjct: 96 VLDTTKSSRESSDARKGFSYLVTATTAVGVTYAAKSIVTQFVSSMSASADVLAMSKIEIK 155
Query: 475 LSSIPEGKSVVMKWRNKPLFVRHRTAEDIAREGAVNKADLRHPEDDSERVQKPEWLILIG 654
LS IPEGK++ KWR KPLFVRHRT ++I +E AV + LR P+ D +RV+KPEW+ILIG
Sbjct: 156 LSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWMILIG 215
Query: 655 ICTHLGCVPISNAGEYNGYYCPCHGSHYDGSGRIRKGPAPFNLEVPDYKF 804
+CTHLGCVPI+NAG++ GYYCPCHGSHYD SGRIRKGPAP NLEVP Y+F
Sbjct: 216 VCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPTYEF 265
>sp|P20788|UCRI_RAT Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP) (Liver
regeneration-related protein LRRGT00195)
Length = 274
Score = 222 bits (565), Expect = 1e-57
Identities = 109/204 (53%), Positives = 139/204 (68%), Gaps = 1/204 (0%)
Frame = +1
Query: 196 PSSVSVSLNGPMQVRLIHTEFCKVPEF-EYRREELKPSTTIDRNTDVERRFPSYXXXXXX 372
P +V LN P VR HT+ KVP+F +YRR E+ ST + + R+ SY
Sbjct: 63 PLVATVGLNVPASVRYSHTDI-KVPDFSDYRRAEVLDSTKSSKESSEARKGFSYLVTATT 121
Query: 373 XXXXXXXXRDLVTAALSSMGPNAKTLSEASIEVDLSSIPEGKSVVMKWRNKPLFVRHRTA 552
++ V+ +SSM +A L+ + IE+ LS IPEGK++ KWR KPLFVRHRT
Sbjct: 122 TVGVAYAAKNAVSQFVSSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTK 181
Query: 553 EDIAREGAVNKADLRHPEDDSERVQKPEWLILIGICTHLGCVPISNAGEYNGYYCPCHGS 732
++I +E AV + LR P+ D ERV+KPEW+ILIG+CTHLGCVPI+NAG++ GYYCPCHGS
Sbjct: 182 KEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGS 241
Query: 733 HYDGSGRIRKGPAPFNLEVPDYKF 804
HYD SGRIRKGPAP NLEVP Y+F
Sbjct: 242 HYDASGRIRKGPAPLNLEVPTYEF 265
>sp|Q69BK0|UCRI_COLPO Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
Length = 274
Score = 221 bits (564), Expect = 2e-57
Identities = 115/221 (52%), Positives = 144/221 (65%), Gaps = 1/221 (0%)
Frame = +1
Query: 145 SQSLLHGKLFKRNFKLWPSSVSVSLNGPMQVRLIHTEFCKVPEF-EYRREELKPSTTIDR 321
S+ L G+ +R P SV LN P V HT+ KVP+F +YRR E+ ST R
Sbjct: 51 SRESLSGQAVRR-----PLVASVGLNVPASVCYSHTDV-KVPDFCDYRRPEVLDSTKSSR 104
Query: 322 NTDVERRFPSYXXXXXXXXXXXXXXRDLVTAALSSMGPNAKTLSEASIEVDLSSIPEGKS 501
+ R+ SY ++ VT +SSM +A L+ A IEV LS IPEGK+
Sbjct: 105 ESSEARKSFSYMVTAVTTVGVAYAAKNAVTQFVSSMSASADVLAMAKIEVKLSDIPEGKN 164
Query: 502 VVMKWRNKPLFVRHRTAEDIAREGAVNKADLRHPEDDSERVQKPEWLILIGICTHLGCVP 681
+ KWR KPLFVRHRT ++I +E AV + LR P+ D +RV+KPEW+ILIG+CTHLGCVP
Sbjct: 165 MAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVP 224
Query: 682 ISNAGEYNGYYCPCHGSHYDGSGRIRKGPAPFNLEVPDYKF 804
I+NAG++ GYYCPCHGSHYD SGRIR GPAP NLEVP Y+F
Sbjct: 225 IANAGDFGGYYCPCHGSHYDASGRIRLGPAPLNLEVPTYEF 265
>sp|Q69BK1|UCRI_CERAE Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
Length = 274
Score = 221 bits (564), Expect = 2e-57
Identities = 114/221 (51%), Positives = 145/221 (65%), Gaps = 1/221 (0%)
Frame = +1
Query: 145 SQSLLHGKLFKRNFKLWPSSVSVSLNGPMQVRLIHTEFCKVPEF-EYRREELKPSTTIDR 321
S+ L G+ +R P SV LN P V HT+ KVP+F +YRR E+ ST R
Sbjct: 51 SRESLSGQAVRR-----PLVASVGLNVPASVCYSHTDV-KVPDFYDYRRLEVLDSTKSSR 104
Query: 322 NTDVERRFPSYXXXXXXXXXXXXXXRDLVTAALSSMGPNAKTLSEASIEVDLSSIPEGKS 501
+ R+ SY +++VT +SSM +A L+ A IE++LS IPEGK+
Sbjct: 105 ESSEARKGFSYLVTAVTTVGVAYAAKNVVTQFISSMSASADVLAMAKIEINLSDIPEGKN 164
Query: 502 VVMKWRNKPLFVRHRTAEDIAREGAVNKADLRHPEDDSERVQKPEWLILIGICTHLGCVP 681
+ KWR KPLFVRHRT ++I E AV + LR P+ D +RV+KPEW+ILIG+CTHLGCVP
Sbjct: 165 MAFKWRGKPLFVRHRTQKEIEEEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVP 224
Query: 682 ISNAGEYNGYYCPCHGSHYDGSGRIRKGPAPFNLEVPDYKF 804
I+NAG++ GYYCPCHGSHYD SGRIR GPAP NLEVP Y+F
Sbjct: 225 IANAGDFGGYYCPCHGSHYDASGRIRLGPAPLNLEVPPYEF 265
>sp|Q69BK4|UCRI_GORGO Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
sp|P47985|UCRI_HUMAN Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
Length = 274
Score = 221 bits (563), Expect = 2e-57
Identities = 115/221 (52%), Positives = 144/221 (65%), Gaps = 1/221 (0%)
Frame = +1
Query: 145 SQSLLHGKLFKRNFKLWPSSVSVSLNGPMQVRLIHTEFCKVPEF-EYRREELKPSTTIDR 321
S+ L G+ +R P SV LN P V HT+ KVP+F EYRR E+ ST R
Sbjct: 51 SRESLSGQAVRR-----PLVASVGLNVPASVCYSHTDI-KVPDFSEYRRLEVLDSTKSSR 104
Query: 322 NTDVERRFPSYXXXXXXXXXXXXXXRDLVTAALSSMGPNAKTLSEASIEVDLSSIPEGKS 501
+ R+ SY ++ VT +SSM +A L+ A IE+ LS IPEGK+
Sbjct: 105 ESSEARKGFSYLVTGVTTVGVAYAAKNAVTQFVSSMSASADVLALAKIEIKLSDIPEGKN 164
Query: 502 VVMKWRNKPLFVRHRTAEDIAREGAVNKADLRHPEDDSERVQKPEWLILIGICTHLGCVP 681
+ KWR KPLFVRHRT ++I +E AV + LR P+ D +RV+KPEW+ILIG+CTHLGCVP
Sbjct: 165 MAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVP 224
Query: 682 ISNAGEYNGYYCPCHGSHYDGSGRIRKGPAPFNLEVPDYKF 804
I+NAG++ GYYCPCHGSHYD SGRIR GPAP NLEVP Y+F
Sbjct: 225 IANAGDFGGYYCPCHGSHYDASGRIRLGPAPLNLEVPTYEF 265
>sp|Q9CR68|UCRI_MOUSE Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
Length = 274
Score = 221 bits (563), Expect = 2e-57
Identities = 108/204 (52%), Positives = 140/204 (68%), Gaps = 1/204 (0%)
Frame = +1
Query: 196 PSSVSVSLNGPMQVRLIHTEFCKVPEF-EYRREELKPSTTIDRNTDVERRFPSYXXXXXX 372
P +V LN P VR HT+ KVP+F +YRR E+ ST + + R+ SY
Sbjct: 63 PLVATVGLNVPASVRFSHTDV-KVPDFSDYRRAEVLDSTKSSKESSEARKGFSYLVTATT 121
Query: 373 XXXXXXXXRDLVTAALSSMGPNAKTLSEASIEVDLSSIPEGKSVVMKWRNKPLFVRHRTA 552
+++V+ +SSM +A L+ + IE+ LS IPEGK++ KWR KPLFVRHRT
Sbjct: 122 TVGVAYAAKNVVSQFVSSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTK 181
Query: 553 EDIAREGAVNKADLRHPEDDSERVQKPEWLILIGICTHLGCVPISNAGEYNGYYCPCHGS 732
++I +E AV + LR P+ D +RV+KPEW+ILIG+CTHLGCVPI+NAG++ GYYCPCHGS
Sbjct: 182 KEIDQEAAVEVSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGS 241
Query: 733 HYDGSGRIRKGPAPFNLEVPDYKF 804
HYD SGRIRKGPAP NLEVP Y+F
Sbjct: 242 HYDASGRIRKGPAPLNLEVPAYEF 265
>sp|Q69BK5|UCRI_PANTR Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
sp|Q69BK6|UCRI_PANPA Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
Length = 274
Score = 221 bits (562), Expect = 3e-57
Identities = 115/221 (52%), Positives = 144/221 (65%), Gaps = 1/221 (0%)
Frame = +1
Query: 145 SQSLLHGKLFKRNFKLWPSSVSVSLNGPMQVRLIHTEFCKVPEF-EYRREELKPSTTIDR 321
S+ L G+ +R P SV LN P V HT+ KVP+F EYRR E+ ST R
Sbjct: 51 SRESLSGQAVRR-----PLVASVGLNVPASVCYSHTDV-KVPDFSEYRRLEVLDSTKSSR 104
Query: 322 NTDVERRFPSYXXXXXXXXXXXXXXRDLVTAALSSMGPNAKTLSEASIEVDLSSIPEGKS 501
+ R+ SY ++ VT +SSM +A L+ A IE+ LS IPEGK+
Sbjct: 105 ESSEARKGFSYLVTGVTTVGVAYAAKNAVTQFVSSMSASADVLALAKIEIKLSDIPEGKN 164
Query: 502 VVMKWRNKPLFVRHRTAEDIAREGAVNKADLRHPEDDSERVQKPEWLILIGICTHLGCVP 681
+ KWR KPLFVRHRT ++I +E AV + LR P+ D +RV+KPEW+ILIG+CTHLGCVP
Sbjct: 165 MAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVP 224
Query: 682 ISNAGEYNGYYCPCHGSHYDGSGRIRKGPAPFNLEVPDYKF 804
I+NAG++ GYYCPCHGSHYD SGRIR GPAP NLEVP Y+F
Sbjct: 225 IANAGDFGGYYCPCHGSHYDASGRIRLGPAPLNLEVPTYEF 265
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,186,397
Number of Sequences: 369166
Number of extensions: 2130308
Number of successful extensions: 5355
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5299
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8742211660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)