Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_C19
(226 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q03105|VATL_TORMA Vacuolar ATP synthase 16 kDa proteolip... 84 1e-16
sp|P27449|VATL_HUMAN Vacuolar ATP synthase 16 kDa proteolip... 84 1e-16
sp|P63081|VATL_RAT Vacuolar ATP synthase 16 kDa proteolipid... 84 1e-16
sp|P23956|VATL_BOVIN Vacuolar ATP synthase 16 kDa proteolip... 84 1e-16
sp|O18882|VATL_SHEEP Vacuolar ATP synthase 16 kDa proteolip... 84 1e-16
sp|Q00607|VATL_CANTR Vacuolar ATP synthase 16 kDa proteolip... 80 2e-15
sp|P31413|VATL_NEUCR Vacuolar ATP synthase 16 kDa proteolip... 79 2e-15
sp|P31403|VATL_MANSE Vacuolar ATP synthase 16 kDa proteolip... 79 4e-15
sp|P55277|VATL_HELVI Vacuolar ATP synthase 16 kDa proteolip... 79 4e-15
sp|P23380|VATL_DROME Vacuolar ATP synthase 16 kDa proteolip... 79 4e-15
>sp|Q03105|VATL_TORMA Vacuolar ATP synthase 16 kDa proteolipid subunit (15 kDa
mediatophore protein)
Length = 154
Score = 83.6 bits (205), Expect = 1e-16
Identities = 43/43 (100%), Positives = 43/43 (100%)
Frame = +3
Query: 3 VGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 131
VGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK
Sbjct: 112 VGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 154
>sp|P27449|VATL_HUMAN Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 155
Score = 83.6 bits (205), Expect = 1e-16
Identities = 43/43 (100%), Positives = 43/43 (100%)
Frame = +3
Query: 3 VGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 131
VGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK
Sbjct: 113 VGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 155
>sp|P63081|VATL_RAT Vacuolar ATP synthase 16 kDa proteolipid subunit
sp|P63082|VATL_MOUSE Vacuolar ATP synthase 16 kDa proteolipid subunit (PL16)
Length = 155
Score = 83.6 bits (205), Expect = 1e-16
Identities = 43/43 (100%), Positives = 43/43 (100%)
Frame = +3
Query: 3 VGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 131
VGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK
Sbjct: 113 VGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 155
>sp|P23956|VATL_BOVIN Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 155
Score = 83.6 bits (205), Expect = 1e-16
Identities = 43/43 (100%), Positives = 43/43 (100%)
Frame = +3
Query: 3 VGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 131
VGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK
Sbjct: 113 VGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 155
>sp|O18882|VATL_SHEEP Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 155
Score = 83.6 bits (205), Expect = 1e-16
Identities = 43/43 (100%), Positives = 43/43 (100%)
Frame = +3
Query: 3 VGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 131
VGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK
Sbjct: 113 VGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 155
>sp|Q00607|VATL_CANTR Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 160
Score = 79.7 bits (195), Expect = 2e-15
Identities = 40/48 (83%), Positives = 45/48 (93%)
Frame = +3
Query: 3 VGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK*MQTI 146
VGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAL+L+++ Q +
Sbjct: 111 VGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALLLNSRASQDV 158
>sp|P31413|VATL_NEUCR Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 161
Score = 79.3 bits (194), Expect = 2e-15
Identities = 39/43 (90%), Positives = 43/43 (100%)
Frame = +3
Query: 3 VGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 131
VGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAL++++K
Sbjct: 112 VGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALLMNSK 154
Score = 30.0 bits (66), Expect = 1.7
Identities = 12/30 (40%), Positives = 23/30 (76%)
Frame = +3
Query: 36 QPRLFVGMILILIFAEVLGLYGLIVALILS 125
+P L V I+ +I A ++G+YGL+V++++S
Sbjct: 46 RPDLIVKNIVPVIMAGIIGIYGLVVSVLIS 75
>sp|P31403|VATL_MANSE Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 156
Score = 78.6 bits (192), Expect = 4e-15
Identities = 40/43 (93%), Positives = 41/43 (95%)
Frame = +3
Query: 3 VGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 131
VGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVA+ L TK
Sbjct: 113 VGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 155
>sp|P55277|VATL_HELVI Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 156
Score = 78.6 bits (192), Expect = 4e-15
Identities = 40/43 (93%), Positives = 41/43 (95%)
Frame = +3
Query: 3 VGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 131
VGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVA+ L TK
Sbjct: 113 VGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 155
>sp|P23380|VATL_DROME Vacuolar ATP synthase 16 kDa proteolipid subunit (Ductin) (VHA16K)
Length = 159
Score = 78.6 bits (192), Expect = 4e-15
Identities = 40/43 (93%), Positives = 41/43 (95%)
Frame = +3
Query: 3 VGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 131
VGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVA+ L TK
Sbjct: 117 VGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 159
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,457,335
Number of Sequences: 369166
Number of extensions: 293902
Number of successful extensions: 921
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 68,354,980
effective HSP length: 46
effective length of database: 59,857,170
effective search space used: 1676000760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)