Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_C18-2
(494 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P60686|MNHD_STAAU Na(+)/H(+) antiporter subunit D (Mnh c... 30 2.4
sp|Q4H174|MATK_WATAN Maturase K (Intron maturase) 30 3.1
sp|P57601|TSGA_BUCAI TsgA protein homolog 30 3.1
sp|Q8CIF6|SIDT2_MOUSE SID1 transmembrane family member 2 pr... 30 4.1
sp|Q4H186|MATK_PILTE Maturase K (Intron maturase) 30 4.1
sp|P53223|CAX4_YEAST Dolichyldiphosphatase (Dolichyl pyroph... 30 4.1
sp|P40144|ADCY5_RABIT Adenylate cyclase type V (ATP pyropho... 29 5.3
sp|Q9EQQ3|GPR63_MOUSE Probable G-protein coupled receptor 6... 29 5.3
sp|P30082|GLR_RAT Glucagon receptor precursor (GL-R) 29 6.9
sp|Q4H192|MATK_MICJU Maturase K (Intron maturase) 29 6.9
>sp|P60686|MNHD_STAAU Na(+)/H(+) antiporter subunit D (Mnh complex subunit D)
sp|P60687|MNHD_STAAW Na(+)/H(+) antiporter subunit D (Mnh complex subunit D)
sp|P60685|MNHD_STAAN Na(+)/H(+) antiporter subunit D (Mnh complex subunit D)
sp|P60684|MNHD_STAAM Na(+)/H(+) antiporter subunit D (Mnh complex subunit D)
Length = 498
Score = 30.4 bits (67), Expect = 2.4
Identities = 19/47 (40%), Positives = 27/47 (57%)
Frame = +3
Query: 219 LFSMLFIIR*SNAIVAVVIYYLYISFQLILAVYFYYYTRLFVNENII 359
+FS L II S I A+VI Y Y + + Y+YY++ LF+ II
Sbjct: 78 IFSALLIIT-SIIITAIVILYSYQTIGIERERYYYYFSVLFMLIGII 123
>sp|Q4H174|MATK_WATAN Maturase K (Intron maturase)
Length = 522
Score = 30.0 bits (66), Expect = 3.1
Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 4/125 (3%)
Frame = +1
Query: 82 EIVQFFLIGIPETSYLRADLTIRINLNKKFI--NKTVCAICGNTPYINYSRCYLLSDSPM 255
+I+Q ++ +P +LR L N N FI NK++ YL S
Sbjct: 172 QILQCWIQDVPLLHFLRFFLHEYNNWNSFFITQNKSI---------------YLFSKETK 216
Query: 256 QSWLWLFIICILAFNLFWLFIFITTLACL*MKISFRKFIQRNYKYEQYKEKLT--ILIKC 429
+ L+ F+ + +LF+F+ + SFR F++R Y Y + + T ++I C
Sbjct: 217 R--LFRFLYNSYVYECEFLFVFLRKHSSYLRFTSFRTFLERRYFYGKMEHLQTEHLIIVC 274
Query: 430 MK*FN 444
FN
Sbjct: 275 CDXFN 279
>sp|P57601|TSGA_BUCAI TsgA protein homolog
Length = 388
Score = 30.0 bits (66), Expect = 3.1
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +1
Query: 265 LWLFIICILAFNLFWLFIFITTLACL*MK--ISFRKFIQRNY 384
+W F I FNL+ +FIF+T+++ + M I F+ + Y
Sbjct: 257 MWFFSFIIKFFNLYRMFIFLTSMSTILMYCFIKSENFLNQQY 298
>sp|Q8CIF6|SIDT2_MOUSE SID1 transmembrane family member 2 precursor
Length = 832
Score = 29.6 bits (65), Expect = 4.1
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = +1
Query: 25 KYLNNEIIKCYITPALENNEIVQFFLIGIPETSYLRADLTIRINLNKKFINKT 183
KYL ++ + P +N +QFF + + S + +R+N F+ +T
Sbjct: 106 KYLYQKVERTLCQPPTKNESEIQFFYVDVSTLSPVNTTYQLRVNRVDNFVLRT 158
>sp|Q4H186|MATK_PILTE Maturase K (Intron maturase)
Length = 522
Score = 29.6 bits (65), Expect = 4.1
Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 4/125 (3%)
Frame = +1
Query: 82 EIVQFFLIGIPETSYLRADLTIRINLNKKFI--NKTVCAICGNTPYINYSRCYLLSDSPM 255
+I+Q ++ +P +LR L N N FI NK++ YL S
Sbjct: 172 QILQCWIQDVPLLHFLRFFLHEYHNWNSFFITQNKSI---------------YLFSKETK 216
Query: 256 QSWLWLFIICILAFNLFWLFIFITTLACL*MKISFRKFIQRNYKYEQYKEKLT--ILIKC 429
+ L+ F+ + ++F+F+ + SFR F++R Y Y + + T ++I C
Sbjct: 217 R--LFRFLYNSYVYECEFVFVFLRKYSSYLRFTSFRTFLERRYFYGKMEHLQTEHLIIVC 274
Query: 430 MK*FN 444
FN
Sbjct: 275 CDYFN 279
>sp|P53223|CAX4_YEAST Dolichyldiphosphatase (Dolichyl pyrophosphate phosphatase)
Length = 239
Score = 29.6 bits (65), Expect = 4.1
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Frame = +1
Query: 172 INKTVCAICGNTPYINYSRCYLLSDSP-----MQSWLWLFIICILAFNLFWLFIFITTLA 336
+N T AI N I + Y+L DS + ++ L I +LAF L W I A
Sbjct: 1 MNSTAAAINPNPNVIPFDDTYILYDSHDFLSFLSAYFSLMPILVLAFYLSWFIITRELEA 60
Query: 337 CL 342
C+
Sbjct: 61 CI 62
>sp|P40144|ADCY5_RABIT Adenylate cyclase type V (ATP pyrophosphate-lyase 5) (Adenylyl
cyclase 5)
Length = 1264
Score = 29.3 bits (64), Expect = 5.3
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -2
Query: 133 LLNTKFLVYRLRKIVQFHYFPKQVLCSILLFRCLNI 26
LL+T L LR Q + KQ++ ++L+F C NI
Sbjct: 359 LLSTLHLAIALRTNAQDRFLLKQLVSNVLIFSCTNI 394
>sp|Q9EQQ3|GPR63_MOUSE Probable G-protein coupled receptor 63 (PSP24-beta) (PSP24-2)
Length = 425
Score = 29.3 bits (64), Expect = 5.3
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +1
Query: 262 WLWLFIICILAFNLFWLFIFITTLACL*MKIS-FRKFIQRNYKYEQYKEKLTILIKCMK* 438
W++ C L+ FWLF+ L + I F +QR K Y+ K+ I +
Sbjct: 153 WIFGKFFCRLSAMFFWLFVIEGVAILLIISIDRFLIIVQRQDKLNPYRAKVLIAVSWATA 212
Query: 439 FNI 447
F++
Sbjct: 213 FSV 215
>sp|P30082|GLR_RAT Glucagon receptor precursor (GL-R)
Length = 485
Score = 28.9 bits (63), Expect = 6.9
Identities = 31/147 (21%), Positives = 61/147 (41%), Gaps = 11/147 (7%)
Frame = +1
Query: 13 SKSLKYLNNEIIKCYITPALENNEIVQFFLIGIPETSYLRADLTIRINLNKKFINKTVCA 192
S S+ + + C + + I+ + + E YL + L+I K F + +C
Sbjct: 212 SVSVWLSDGAVAGCRVATVIMQYGIIANYCWLLVEGVYLYSLLSITTFSEKSFFSLYLCI 271
Query: 193 ICGNT-----PYINYS------RCYLLSDSPMQSWLWLFIICILAFNLFWLFIFITTLAC 339
G+ P++ +C+ +D+ M W W+ I +L L FIF+ +
Sbjct: 272 GWGSPLLFVIPWVVVKCLFENVQCWTSNDN-MGFW-WILRIPVLLAILINFFIFVRIIHL 329
Query: 340 L*MKISFRKFIQRNYKYEQYKEKLTIL 420
L K+ + +YK+ + LT++
Sbjct: 330 LVAKLRAHQMHYADYKFRLARSTLTLI 356
>sp|Q4H192|MATK_MICJU Maturase K (Intron maturase)
Length = 522
Score = 28.9 bits (63), Expect = 6.9
Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 2/123 (1%)
Frame = +1
Query: 82 EIVQFFLIGIPETSYLRADLTIRINLNKKFINKTVCAICGNTPYINYSRCYLLSDSPMQS 261
+I+Q ++ +P +LR L N N FI + + YL S +
Sbjct: 172 QILQCWIQDVPLLHFLRFFLHEYHNWNSFFITQN-------------NSIYLFSKETKR- 217
Query: 262 WLWLFIICILAFNLFWLFIFITTLACL*MKISFRKFIQRNYKYEQYKEKLT--ILIKCMK 435
L+ F+ + ++F+F+ + SFR F++R Y Y + + T ++I C
Sbjct: 218 -LFRFLYNSYVYECEFVFVFLRKHSSYLRFTSFRTFLERRYFYVKMEHLQTEHLIIVCCD 276
Query: 436 *FN 444
FN
Sbjct: 277 YFN 279
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,715,100
Number of Sequences: 369166
Number of extensions: 944458
Number of successful extensions: 2546
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2543
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3069744620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)