Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_C18-1
(356 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q7VKH9|RL31B_HAEDU 50S ribosomal protein L31 type B 33 0.26
sp|Q9P6S0|YJP1_SCHPO Hypothetical threonine-rich protein C1... 29 2.9
sp|P58955|GR36A_DROME Putative gustatory receptor 36a 29 3.8
sp|P74178|Y1178_SYNY3 Hypothetical protein sll1178 28 6.5
sp|Q6YR87|TILS_ONYPE tRNA(Ile)-lysidine synthase (tRNA(Ile)... 28 6.5
sp|P22017|B3_USTMA Mating-type locus allele B3 protein 28 6.5
sp|Q9H0J9|ZCC1_HUMAN Zinc finger CCCH type domain containin... 28 8.4
sp|Q99558|M3K14_HUMAN Mitogen-activated protein kinase kina... 28 8.4
sp|P27398|CAND_DROME Calpain D (Calcium-activated neutral p... 28 8.4
sp|Q7NS89|SYH_CHRVO Histidyl-tRNA synthetase (Histidine--tR... 28 8.4
>sp|Q7VKH9|RL31B_HAEDU 50S ribosomal protein L31 type B
Length = 89
Score = 32.7 bits (73), Expect = 0.26
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3
Query: 168 YSCSSNVQWFIRACVSSNNSIMW 236
Y S+ + W IR+CV++N S+MW
Sbjct: 16 YDASAQMGWVIRSCVATNKSMMW 38
>sp|Q9P6S0|YJP1_SCHPO Hypothetical threonine-rich protein C1742.01 in chromosome III
precursor
Length = 1563
Score = 29.3 bits (64), Expect = 2.9
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = +1
Query: 142 TFPTHISPLTLARATYSGS*ELVC-PPTTALCGTAPFPIHCQTYSFPQTRTPVSQST 309
T T +P T+ T SGS C PPTT L T P T +P + T T
Sbjct: 165 TTSTSCNPATVLIVTTSGSTSTSCPPPTTILIVTVPTTTTTTTVGYPGSVTTTLTGT 221
>sp|P58955|GR36A_DROME Putative gustatory receptor 36a
Length = 391
Score = 28.9 bits (63), Expect = 3.8
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +2
Query: 107 HMA*MHNYVKMLLFQRTYHHLLLLEQRTVVHKS 205
+MA +Y+ ++LF R Y+HLL E R +H+S
Sbjct: 173 NMAISQHYL-VILFVRAYYHLLKTEVRQAIHES 204
>sp|P74178|Y1178_SYNY3 Hypothetical protein sll1178
Length = 615
Score = 28.1 bits (61), Expect = 6.5
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = -1
Query: 308 VLCDTGVRVWGNEYVWQWMGNGAVPH 231
VLC GV W +W GN PH
Sbjct: 152 VLCMDGVGEWATTSLWSGQGNQLTPH 177
>sp|Q6YR87|TILS_ONYPE tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
(tRNA(Ile)-2-lysyl-cytidine synthase)
Length = 436
Score = 28.1 bits (61), Expect = 6.5
Identities = 12/46 (26%), Positives = 27/46 (58%)
Frame = +2
Query: 167 LLLLEQRTVVHKSLCVLQQQHYVVLPHSPSIARHIHFPKHVLQYHK 304
LLLLEQ+ + + + + P+ P+++ H++F H+++ +K
Sbjct: 258 LLLLEQQNITKSFIFIQNIIKGINNPYKPNLSWHLNFEWHLIKDYK 303
>sp|P22017|B3_USTMA Mating-type locus allele B3 protein
Length = 410
Score = 28.1 bits (61), Expect = 6.5
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = +2
Query: 176 LEQRTVVHKSLCVLQQQ---HYVVLPHSPSIARHIHFPKH 286
+E R V+ + L LQQ+ H LPH P + + IH H
Sbjct: 28 VEHRPVLVRKLQELQQKTPKHVAKLPHEPEMIQQIHQAAH 67
>sp|Q9H0J9|ZCC1_HUMAN Zinc finger CCCH type domain containing protein 1
Length = 701
Score = 27.7 bits (60), Expect = 8.4
Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = -1
Query: 251 GNGAVPHNAVVGGHTSSYEPLYVARARV-SGDMCVGKVASSHNCAFMPYG 105
G A P V+ PL + RA S CVG A H C FM YG
Sbjct: 57 GAAAAPERVVLAA-----SPLRLCRAHQGSKPGCVGLCAQLHLCRFMVYG 101
>sp|Q99558|M3K14_HUMAN Mitogen-activated protein kinase kinase kinase 14 (NF-kappa
beta-inducing kinase) (Serine/threonine-protein kinase
NIK) (HsNIK)
Length = 947
Score = 27.7 bits (60), Expect = 8.4
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 185 RTVVHKSLCVLQQQHYVVLPHSPSIARHIHFPKHVLQYHKVPH 313
R+ +HK + LQ ++V H P + P H Y ++PH
Sbjct: 223 RSELHKLISPLQCLNHVWKLHHPQDGGPLPLPTHPFPYSRLPH 265
>sp|P27398|CAND_DROME Calpain D (Calcium-activated neutral proteinase D) (CANP D) (Small
optic lobes protein)
Length = 1594
Score = 27.7 bits (60), Expect = 8.4
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 183 NVQWFIRACVSSNNSIMWYCPI 248
N +W AC + N+S+ W+C I
Sbjct: 136 NRRWVCHACGTDNSSVTWHCLI 157
>sp|Q7NS89|SYH_CHRVO Histidyl-tRNA synthetase (Histidine--tRNA ligase) (HisRS)
Length = 423
Score = 27.7 bits (60), Expect = 8.4
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = -2
Query: 337 AEKIIFLNMRYFVILEYVFGEMNMSGNGWGMGQYHIMLLLED 212
A+ I RY ++E + G+ SG G+GMG ++LLL+D
Sbjct: 279 AQGTICAGGRYDGLIEQLGGKA-ASGIGFGMGMERVLLLLQD 319
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,853,535
Number of Sequences: 369166
Number of extensions: 1052851
Number of successful extensions: 2986
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2982
length of database: 68,354,980
effective HSP length: 86
effective length of database: 52,467,770
effective search space used: 1678968640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)