Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_C13
(208 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9I954|TYBB_CYPCA Thymosin beta-b 42 6e-04
sp|P21753|TYB9_PIG Thymosin beta-9 41 0.001
sp|P21752|TYB9_BOVIN Thymosin beta-9 (Thymosin beta-10) [Co... 41 0.001
sp|P33248|TYB12_LATJA Thymosin beta-12 40 0.002
sp|P20065|TYB4_MOUSE Thymosin beta-4 (T beta 4) [Contains: ... 39 0.004
sp|P62329|TYB4_RAT Thymosin beta-4 (T beta 4) [Contains: He... 39 0.004
sp|P18758|TYB4_XENLA Thymosin beta-4 (T beta 4) (Thymosin b... 39 0.004
sp|P34032|TYB4_RABIT Thymosin beta-4 (T beta 4) 39 0.004
sp|P26352|TYB12_ONCMY Thymosin beta-12 38 0.006
sp|P63312|TYB10_RAT Thymosin beta-10 >gi|54036496|sp|Q6ZWY8... 38 0.006
>sp|Q9I954|TYBB_CYPCA Thymosin beta-b
Length = 43
Score = 41.6 bits (96), Expect = 6e-04
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = +2
Query: 8 PVVNEVNEFQKDKLKHVEAQEKVVLPDHDTIKQEK 112
P ++EV++F K KLK E QEK LP +TI+QEK
Sbjct: 5 PDISEVSQFDKTKLKKTETQEKNTLPTKETIEQEK 39
>sp|P21753|TYB9_PIG Thymosin beta-9
Length = 41
Score = 40.8 bits (94), Expect = 0.001
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +2
Query: 8 PVVNEVNEFQKDKLKHVEAQEKVVLPDHDTIKQEK 112
P + E+N F K KLK E QEK LP +TI+QEK
Sbjct: 4 PDMGEINSFDKAKLKKTETQEKNTLPTKETIEQEK 38
>sp|P21752|TYB9_BOVIN Thymosin beta-9 (Thymosin beta-10) [Contains: Thymosin beta-8]
Length = 42
Score = 40.8 bits (94), Expect = 0.001
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +2
Query: 8 PVVNEVNEFQKDKLKHVEAQEKVVLPDHDTIKQEK 112
P + E+N F K KLK E QEK LP +TI+QEK
Sbjct: 5 PDLGEINSFDKAKLKKTETQEKNTLPTKETIEQEK 39
>sp|P33248|TYB12_LATJA Thymosin beta-12
Length = 43
Score = 40.0 bits (92), Expect = 0.002
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +2
Query: 8 PVVNEVNEFQKDKLKHVEAQEKVVLPDHDTIKQEK 112
P ++EV F K KLK E QEK LP +TI+QEK
Sbjct: 4 PDISEVTSFDKTKLKKTETQEKNPLPSKETIEQEK 38
>sp|P20065|TYB4_MOUSE Thymosin beta-4 (T beta 4) [Contains: Hematopoietic system
regulatory peptide (Seraspenide)]
Length = 50
Score = 38.9 bits (89), Expect = 0.004
Identities = 19/39 (48%), Positives = 24/39 (61%)
Frame = +2
Query: 8 PVVNEVNEFQKDKLKHVEAQEKVVLPDHDTIKQEKTEQE 124
P + E+ +F K KLK E QEK LP +TI+QEK E
Sbjct: 11 PDMAEIEKFDKSKLKKTETQEKNPLPSKETIEQEKQAGE 49
>sp|P62329|TYB4_RAT Thymosin beta-4 (T beta 4) [Contains: Hematopoietic system
regulatory peptide (Seraspenide)]
sp|P62328|TYB4_HUMAN Thymosin beta-4 (T beta 4) (Fx) [Contains: Hematopoietic system
regulatory peptide (Seraspenide)]
Length = 44
Score = 38.9 bits (89), Expect = 0.004
Identities = 19/39 (48%), Positives = 24/39 (61%)
Frame = +2
Query: 8 PVVNEVNEFQKDKLKHVEAQEKVVLPDHDTIKQEKTEQE 124
P + E+ +F K KLK E QEK LP +TI+QEK E
Sbjct: 5 PDMAEIEKFDKSKLKKTETQEKNPLPSKETIEQEKQAGE 43
>sp|P18758|TYB4_XENLA Thymosin beta-4 (T beta 4) (Thymosin beta 4Xen)
Length = 44
Score = 38.9 bits (89), Expect = 0.004
Identities = 19/39 (48%), Positives = 24/39 (61%)
Frame = +2
Query: 8 PVVNEVNEFQKDKLKHVEAQEKVVLPDHDTIKQEKTEQE 124
P + E+ +F K KLK E QEK LP +TI+QEK E
Sbjct: 5 PDMAEIEKFDKAKLKKTETQEKNPLPSKETIEQEKQTSE 43
>sp|P34032|TYB4_RABIT Thymosin beta-4 (T beta 4)
Length = 43
Score = 38.9 bits (89), Expect = 0.004
Identities = 19/39 (48%), Positives = 24/39 (61%)
Frame = +2
Query: 8 PVVNEVNEFQKDKLKHVEAQEKVVLPDHDTIKQEKTEQE 124
P + E+ +F K KLK E QEK LP +TI+QEK E
Sbjct: 4 PDMAEIEKFDKSKLKKTETQEKNPLPSKETIEQEKQAGE 42
>sp|P26352|TYB12_ONCMY Thymosin beta-12
Length = 42
Score = 38.1 bits (87), Expect = 0.006
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +2
Query: 8 PVVNEVNEFQKDKLKHVEAQEKVVLPDHDTIKQEK 112
P + EV+ F K KLK E QEK LP +TI+QEK
Sbjct: 4 PDLAEVSNFDKTKLKKTETQEKNPLPTKETIEQEK 38
>sp|P63312|TYB10_RAT Thymosin beta-10
sp|Q6ZWY8|TYB10_MOUSE Thymosin beta-10
sp|P63313|TYB10_HUMAN Thymosin beta-10
sp|P63314|TYB10_HORSE Thymosin beta-10
Length = 44
Score = 38.1 bits (87), Expect = 0.006
Identities = 18/38 (47%), Positives = 23/38 (60%)
Frame = +2
Query: 8 PVVNEVNEFQKDKLKHVEAQEKVVLPDHDTIKQEKTEQ 121
P + E+ F K KLK E QEK LP +TI+QEK +
Sbjct: 5 PDMGEIASFDKAKLKKTETQEKNTLPTKETIEQEKRSE 42
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,259,966
Number of Sequences: 369166
Number of extensions: 272088
Number of successful extensions: 1836
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1813
length of database: 68,354,980
effective HSP length: 40
effective length of database: 60,965,580
effective search space used: 1707036240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)