Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_B22
(426 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P14773|HMDH_DROME 3-hydroxy-3-methylglutaryl-coenzyme A ... 30 2.8
sp|Q01833|CO3_NAJNA Cobra venom factor precursor (CVF) (Com... 30 2.8
sp|P33859|VC01_VARV Protein C1 28 8.1
sp|Q8IZF6|GP112_HUMAN Probable G-protein coupled receptor 112 28 8.1
>sp|P14773|HMDH_DROME 3-hydroxy-3-methylglutaryl-coenzyme A reductase (HMG-CoA reductase)
Length = 920
Score = 29.6 bits (65), Expect = 2.8
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 288 TKMF*VTGNIPSRNVTIPTSQDLSTPIDMWPNNSVLFYM 404
T +F TG P++NVT S + ST ++ W NS YM
Sbjct: 784 TAVFLATGQDPAQNVT---SSNCSTAMECWAENSEDLYM 819
>sp|Q01833|CO3_NAJNA Cobra venom factor precursor (CVF) (Complement C3 homolog)
[Contains: Cobra venom factor alpha chain; Cobra venom
factor gamma chain; Cobra venom factor beta chain]
Length = 1651
Score = 29.6 bits (65), Expect = 2.8
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = -3
Query: 277 NLPNIFSFGSPSAINKYKSSPKE 209
NLP + SFG+ A+ KY+ SP+E
Sbjct: 188 NLPELVSFGTWKAVAKYEHSPEE 210
>sp|P33859|VC01_VARV Protein C1
Length = 214
Score = 28.1 bits (61), Expect = 8.1
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 82 DIETAKKTNILIRYPFLLKGNNDIGNVSLLKVNYRFVEKN 201
DIET K +RY L K DI L++ +R++E++
Sbjct: 81 DIETKLKPKPAVRYAILDKMTKDIKLTDLVRHYFRYIEQD 120
>sp|Q8IZF6|GP112_HUMAN Probable G-protein coupled receptor 112
Length = 2799
Score = 28.1 bits (61), Expect = 8.1
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = -1
Query: 405 AYKTAPNYSATYLWGLINPERLGLLRCEK 319
A +TA Y TY W L NP RC K
Sbjct: 2185 ADETASKYKGTYKWLLTNPTETAQTRCIK 2213
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,438,784
Number of Sequences: 369166
Number of extensions: 788615
Number of successful extensions: 1619
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1619
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 2102781030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)