Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_B21
(587 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P62083|RS7_RAT 40S ribosomal protein S7 (S8) >gi|4906583... 217 2e-56
sp|P50894|RS7_FUGRU 40S ribosomal protein S7 217 2e-56
sp|P62084|RS7_BRARE 40S ribosomal protein S7 216 3e-56
sp|Q90YR7|RS7_ICTPU 40S ribosomal protein S7 216 3e-56
sp|P02362|RS7_XENLA 40S ribosomal protein S7 (S8) 216 4e-56
sp|Q9VA91|RS7_DROME 40S ribosomal protein S7 211 1e-54
sp|P62085|RS7_DROYA 40S ribosomal protein S7 209 3e-54
sp|Q9NB21|RS7_CULQU 40S ribosomal protein S7 205 6e-53
sp|P33514|RS7_ANOGA 40S ribosomal protein S7 204 1e-52
sp|Q962S0|RS7_SPOFR 40S ribosomal protein S7 200 2e-51
>sp|P62083|RS7_RAT 40S ribosomal protein S7 (S8)
sp|P62082|RS7_MOUSE 40S ribosomal protein S7
sp|P62081|RS7_HUMAN 40S ribosomal protein S7
sp|Q5RT64|RS7_FELCA 40S ribosomal protein S7
Length = 194
Score = 217 bits (552), Expect = 2e-56
Identities = 111/185 (60%), Positives = 137/185 (74%), Gaps = 1/185 (0%)
Frame = +2
Query: 2 KYNKEAPTELELQIASFINELQNTNDMKEVLSELMIAGAKECEVSG-KKAIIVYVPINQQ 178
K N E P E E I+ + EL+ +D+K L EL I AKE EV G +KAII++VP+ Q
Sbjct: 10 KPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFVPVPQL 69
Query: 179 KLYQKIHTRFIRELEKKFSGKHVFICAYRTILPKPSRNSKNTLKQKRPISRTLTSVHDNI 358
K +QKI R +RELEKKFSGKHV A R ILPKP+R S+ KQKRP SRTLT+VHD I
Sbjct: 70 KSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAI 129
Query: 359 LSDLVFPAEIIGKRTRISVDGKRLIKCHLEKSQQFNIEHKIETVASLYKQLTGKDVAFEF 538
L DLVFP+EI+GKR R+ +DG RLIK HL+K+QQ N+EHK+ET + +YK+LTGKDV FEF
Sbjct: 130 LEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEF 189
Query: 539 PEWNL 553
PE+ L
Sbjct: 190 PEFQL 194
>sp|P50894|RS7_FUGRU 40S ribosomal protein S7
Length = 194
Score = 217 bits (552), Expect = 2e-56
Identities = 111/185 (60%), Positives = 137/185 (74%), Gaps = 1/185 (0%)
Frame = +2
Query: 2 KYNKEAPTELELQIASFINELQNTNDMKEVLSELMIAGAKECEVSG-KKAIIVYVPINQQ 178
K N E P E E I+ + EL+ +D+K L EL I AKE EV G +KAII++VP+ Q
Sbjct: 10 KPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGSRKAIIIFVPVPQL 69
Query: 179 KLYQKIHTRFIRELEKKFSGKHVFICAYRTILPKPSRNSKNTLKQKRPISRTLTSVHDNI 358
K +QKI R +RELEKKFSGKHV A R ILPKP+R S++ KQKRP SRTLTSVHD I
Sbjct: 70 KSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRSKNKQKRPRSRTLTSVHDAI 129
Query: 359 LSDLVFPAEIIGKRTRISVDGKRLIKCHLEKSQQFNIEHKIETVASLYKQLTGKDVAFEF 538
L DLVFP+EI+GKR R+ +D RLIK HL+K+QQ N+EHK+ET + +YK+LTGKDV FEF
Sbjct: 130 LEDLVFPSEIVGKRIRVKMDSSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVVFEF 189
Query: 539 PEWNL 553
PE+ L
Sbjct: 190 PEFQL 194
>sp|P62084|RS7_BRARE 40S ribosomal protein S7
Length = 194
Score = 216 bits (550), Expect = 3e-56
Identities = 111/185 (60%), Positives = 136/185 (73%), Gaps = 1/185 (0%)
Frame = +2
Query: 2 KYNKEAPTELELQIASFINELQNTNDMKEVLSELMIAGAKECEVSG-KKAIIVYVPINQQ 178
K N E P E E I+ + EL+ +D+K L EL I AKE EV G +KAII++VP+ Q
Sbjct: 10 KPNGEKPDEFESGISQALLELEMNSDLKAQLRELHITAAKEIEVGGSRKAIIIFVPVPQL 69
Query: 179 KLYQKIHTRFIRELEKKFSGKHVFICAYRTILPKPSRNSKNTLKQKRPISRTLTSVHDNI 358
K +QKI R +RELEKKFSGKHV A R ILPKP+R S+ KQKRP SRTLT+VHD I
Sbjct: 70 KSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTNVHDAI 129
Query: 359 LSDLVFPAEIIGKRTRISVDGKRLIKCHLEKSQQFNIEHKIETVASLYKQLTGKDVAFEF 538
L DLVFP+EI+GKR R+ +D RLIK HL+K+QQ N+EHK+ET A +YK+LTGKDV FEF
Sbjct: 130 LEDLVFPSEIVGKRIRVKLDSSRLIKVHLDKAQQNNVEHKVETFAGVYKKLTGKDVIFEF 189
Query: 539 PEWNL 553
PE+ L
Sbjct: 190 PEFQL 194
>sp|Q90YR7|RS7_ICTPU 40S ribosomal protein S7
Length = 194
Score = 216 bits (550), Expect = 3e-56
Identities = 110/185 (59%), Positives = 136/185 (73%), Gaps = 1/185 (0%)
Frame = +2
Query: 2 KYNKEAPTELELQIASFINELQNTNDMKEVLSELMIAGAKECEVSG-KKAIIVYVPINQQ 178
K N E P E E I+ + EL+ +D+K L EL I AKE EV G +KAII++VP+ Q
Sbjct: 10 KANGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGSRKAIIIFVPVPQL 69
Query: 179 KLYQKIHTRFIRELEKKFSGKHVFICAYRTILPKPSRNSKNTLKQKRPISRTLTSVHDNI 358
K +QKI R +RELEKKFSGKHV A R ILPKP+R S+ KQKRP SRTLT+VHD I
Sbjct: 70 KAFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAI 129
Query: 359 LSDLVFPAEIIGKRTRISVDGKRLIKCHLEKSQQFNIEHKIETVASLYKQLTGKDVAFEF 538
L DLV+P+EI+GKR R+ +D RLIK HL+K+QQ N+EHK+ET A +YK+LTGKDV FEF
Sbjct: 130 LEDLVYPSEIVGKRIRVKLDSSRLIKVHLDKAQQNNVEHKVETFAGVYKKLTGKDVVFEF 189
Query: 539 PEWNL 553
PE+ L
Sbjct: 190 PEFQL 194
>sp|P02362|RS7_XENLA 40S ribosomal protein S7 (S8)
Length = 194
Score = 216 bits (549), Expect = 4e-56
Identities = 109/185 (58%), Positives = 138/185 (74%), Gaps = 1/185 (0%)
Frame = +2
Query: 2 KYNKEAPTELELQIASFINELQNTNDMKEVLSELMIAGAKECEV-SGKKAIIVYVPINQQ 178
K N E P E E I+ + EL+ +D+K L EL I AKE EV +G+KAII++VP+ Q
Sbjct: 10 KPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGAGRKAIIIFVPVPQL 69
Query: 179 KLYQKIHTRFIRELEKKFSGKHVFICAYRTILPKPSRNSKNTLKQKRPISRTLTSVHDNI 358
K +QKI R +RELEKKFSGKHV A R ILPKP+R S+ KQKRP SRTLT+VHD I
Sbjct: 70 KSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAI 129
Query: 359 LSDLVFPAEIIGKRTRISVDGKRLIKCHLEKSQQFNIEHKIETVASLYKQLTGKDVAFEF 538
L DLV+P+EI+G+R R+ +DG RLIK HL+K+QQ N+EHK+ET + +YK+LTGKDV FEF
Sbjct: 130 LEDLVYPSEIVGRRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVVFEF 189
Query: 539 PEWNL 553
PE+ L
Sbjct: 190 PEFQL 194
>sp|Q9VA91|RS7_DROME 40S ribosomal protein S7
Length = 194
Score = 211 bits (537), Expect = 1e-54
Identities = 102/175 (58%), Positives = 133/175 (76%)
Frame = +2
Query: 20 PTELELQIASFINELQNTNDMKEVLSELMIAGAKECEVSGKKAIIVYVPINQQKLYQKIH 199
P + E IA + EL+ +D+K L +L I A+E E KKA+I+YVPI QQK++QKI
Sbjct: 15 PDDFEKSIAQALVELEANSDLKPYLRDLHITRAREIEFGSKKAVIIYVPIPQQKVFQKIQ 74
Query: 200 TRFIRELEKKFSGKHVFICAYRTILPKPSRNSKNTLKQKRPISRTLTSVHDNILSDLVFP 379
+RELEKKFSGKHV + A R ILPKP+R ++N LKQKRP SRTLT+V+D IL DLVFP
Sbjct: 75 IILVRELEKKFSGKHVVVIAERKILPKPTRKARNPLKQKRPRSRTLTAVYDAILEDLVFP 134
Query: 380 AEIIGKRTRISVDGKRLIKCHLEKSQQFNIEHKIETVASLYKQLTGKDVAFEFPE 544
AEI+GKR R+ +DG +L+K HL+K+QQ IEHK++T S+YK+LTG+DV FEFP+
Sbjct: 135 AEIVGKRIRVKLDGSQLVKVHLDKNQQTTIEHKVDTFTSVYKKLTGRDVTFEFPD 189
>sp|P62085|RS7_DROYA 40S ribosomal protein S7
Length = 194
Score = 209 bits (533), Expect = 3e-54
Identities = 101/175 (57%), Positives = 132/175 (75%)
Frame = +2
Query: 20 PTELELQIASFINELQNTNDMKEVLSELMIAGAKECEVSGKKAIIVYVPINQQKLYQKIH 199
P + E IA + EL+ +D+K L +L I A+E E KKA+I+YVPI QQK++QKI
Sbjct: 15 PDDFEKSIAQALVELEANSDLKPYLRDLHITRAREIEFGSKKAVIIYVPIPQQKVFQKIQ 74
Query: 200 TRFIRELEKKFSGKHVFICAYRTILPKPSRNSKNTLKQKRPISRTLTSVHDNILSDLVFP 379
+RELEKKFSGKHV + R ILPKP+R ++N LKQKRP SRTLT+V+D IL DLVFP
Sbjct: 75 IILVRELEKKFSGKHVVVIGERKILPKPTRKARNPLKQKRPRSRTLTAVYDAILEDLVFP 134
Query: 380 AEIIGKRTRISVDGKRLIKCHLEKSQQFNIEHKIETVASLYKQLTGKDVAFEFPE 544
AEI+GKR R+ +DG +L+K HL+K+QQ IEHK++T S+YK+LTG+DV FEFP+
Sbjct: 135 AEIVGKRIRVKLDGSQLVKVHLDKNQQTTIEHKVDTFTSVYKKLTGRDVTFEFPD 189
>sp|Q9NB21|RS7_CULQU 40S ribosomal protein S7
Length = 192
Score = 205 bits (522), Expect = 6e-53
Identities = 100/175 (57%), Positives = 129/175 (73%)
Frame = +2
Query: 20 PTELELQIASFINELQNTNDMKEVLSELMIAGAKECEVSGKKAIIVYVPINQQKLYQKIH 199
P E QI I EL+ +D+K L +L I A+E E + KKAI++YVP+ +QK +QK+
Sbjct: 15 PDAFEGQIGQAILELEMNSDLKPQLRDLHITRAREIEFNNKKAIVIYVPVPKQKAFQKVQ 74
Query: 200 TRFIRELEKKFSGKHVFICAYRTILPKPSRNSKNTLKQKRPISRTLTSVHDNILSDLVFP 379
TR +RELEKKFSGKHV R ILPKP R ++ KQKRP SRTLT+V+D IL DLVFP
Sbjct: 75 TRLVRELEKKFSGKHVVFIGERRILPKPQRGRRDPNKQKRPRSRTLTAVYDAILEDLVFP 134
Query: 380 AEIIGKRTRISVDGKRLIKCHLEKSQQFNIEHKIETVASLYKQLTGKDVAFEFPE 544
AE++GKR R+ +DG +LIK HL+K+QQ IEHK++T S+YK+LTG+DV FEFPE
Sbjct: 135 AEVVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFTSVYKKLTGRDVTFEFPE 189
>sp|P33514|RS7_ANOGA 40S ribosomal protein S7
Length = 192
Score = 204 bits (519), Expect = 1e-52
Identities = 100/175 (57%), Positives = 129/175 (73%)
Frame = +2
Query: 20 PTELELQIASFINELQNTNDMKEVLSELMIAGAKECEVSGKKAIIVYVPINQQKLYQKIH 199
P E QI I EL+ +D+K L +L I A+E E + KKAII+YVP+ +QK +QK+
Sbjct: 15 PDAFETQIGQAILELEMNSDLKPQLRDLYITRAREVEFNNKKAIIIYVPVPKQKAFQKVQ 74
Query: 200 TRFIRELEKKFSGKHVFICAYRTILPKPSRNSKNTLKQKRPISRTLTSVHDNILSDLVFP 379
TR +RELEKKFSGKHV A R ILPKP R ++ KQKRP S +T+V+D IL DLVFP
Sbjct: 75 TRLVRELEKKFSGKHVVFIAERRILPKPMRGRRDPNKQKRPRSPNVTAVYDAILEDLVFP 134
Query: 380 AEIIGKRTRISVDGKRLIKCHLEKSQQFNIEHKIETVASLYKQLTGKDVAFEFPE 544
AE++GKR R+ +DG +LIK HL+K+QQ IEHK++T AS+YK+LTG+DV FEFPE
Sbjct: 135 AEVVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFASVYKKLTGRDVTFEFPE 189
>sp|Q962S0|RS7_SPOFR 40S ribosomal protein S7
Length = 190
Score = 200 bits (509), Expect = 2e-51
Identities = 102/181 (56%), Positives = 129/181 (71%)
Frame = +2
Query: 2 KYNKEAPTELELQIASFINELQNTNDMKEVLSELMIAGAKECEVSGKKAIIVYVPINQQK 181
K + P E I+ + EL+ +D+K L EL I AKE E+ KK+II+YVP+ + K
Sbjct: 7 KASAAEPDVFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLK 66
Query: 182 LYQKIHTRFIRELEKKFSGKHVFICAYRTILPKPSRNSKNTLKQKRPISRTLTSVHDNIL 361
+QKI R +RELEKKFSGKHV R ILPKPS ++ KQKRP SRTLTSV+D IL
Sbjct: 67 AFQKIQIRLVRELEKKFSGKHVVFIGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAIL 126
Query: 362 SDLVFPAEIIGKRTRISVDGKRLIKCHLEKSQQFNIEHKIETVASLYKQLTGKDVAFEFP 541
DLVFPAEI+GKR RI +DG +LIK HL+K+QQ IEHK++T S+YK+LTG++V FEFP
Sbjct: 127 EDLVFPAEIVGKRIRIKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 186
Query: 542 E 544
E
Sbjct: 187 E 187
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,089,763
Number of Sequences: 369166
Number of extensions: 1350697
Number of successful extensions: 4096
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4076
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4406202450
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)