Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_B20
(421 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P63081|VATL_RAT Vacuolar ATP synthase 16 kDa proteolipid... 167 8e-42
sp|Q03105|VATL_TORMA Vacuolar ATP synthase 16 kDa proteolip... 167 1e-41
sp|P27449|VATL_HUMAN Vacuolar ATP synthase 16 kDa proteolip... 166 2e-41
sp|P23956|VATL_BOVIN Vacuolar ATP synthase 16 kDa proteolip... 166 2e-41
sp|O18882|VATL_SHEEP Vacuolar ATP synthase 16 kDa proteolip... 166 2e-41
sp|P55277|VATL_HELVI Vacuolar ATP synthase 16 kDa proteolip... 165 4e-41
sp|P31403|VATL_MANSE Vacuolar ATP synthase 16 kDa proteolip... 164 9e-41
sp|O16110|VATL_AEDAE Vacuolar ATP synthase 16 kDa proteolip... 163 2e-40
sp|P23380|VATL_DROME Vacuolar ATP synthase 16 kDa proteolip... 159 2e-39
sp|Q26250|VATL_NEPNO Vacuolar ATP synthase 16 kDa proteolip... 155 2e-38
>sp|P63081|VATL_RAT Vacuolar ATP synthase 16 kDa proteolipid subunit
sp|P63082|VATL_MOUSE Vacuolar ATP synthase 16 kDa proteolipid subunit (PL16)
Length = 155
Score = 167 bits (423), Expect = 8e-42
Identities = 93/125 (74%), Positives = 98/125 (78%)
Frame = +1
Query: 1 AYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAQQIGTNYTMEKSL 180
AYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA + T+ +S
Sbjct: 31 AYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIANSLTDGITLYRSF 90
Query: 181 RHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAL 360
IGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAL
Sbjct: 91 LQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAL 150
Query: 361 ILSTK 375
ILSTK
Sbjct: 151 ILSTK 155
>sp|Q03105|VATL_TORMA Vacuolar ATP synthase 16 kDa proteolipid subunit (15 kDa
mediatophore protein)
Length = 154
Score = 167 bits (422), Expect = 1e-41
Identities = 93/125 (74%), Positives = 99/125 (79%)
Frame = +1
Query: 1 AYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAQQIGTNYTMEKSL 180
AYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA + + ++ KS
Sbjct: 30 AYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIANSLTEDISLFKSF 89
Query: 181 RHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAL 360
IGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAL
Sbjct: 90 LQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAL 149
Query: 361 ILSTK 375
ILSTK
Sbjct: 150 ILSTK 154
>sp|P27449|VATL_HUMAN Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 155
Score = 166 bits (419), Expect = 2e-41
Identities = 92/125 (73%), Positives = 98/125 (78%)
Frame = +1
Query: 1 AYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAQQIGTNYTMEKSL 180
AYGTAKSGTGIA+M+VMRPE IMKSIIPVVMAGIIAIYGLVVAVLIA + + ++ KS
Sbjct: 31 AYGTAKSGTGIAAMSVMRPEQIMKSIIPVVMAGIIAIYGLVVAVLIANSLNDDISLYKSF 90
Query: 181 RHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAL 360
IGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAL
Sbjct: 91 LQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAL 150
Query: 361 ILSTK 375
ILSTK
Sbjct: 151 ILSTK 155
>sp|P23956|VATL_BOVIN Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 155
Score = 166 bits (419), Expect = 2e-41
Identities = 91/125 (72%), Positives = 98/125 (78%)
Frame = +1
Query: 1 AYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAQQIGTNYTMEKSL 180
AYGTAKSGTGIA+M+VMRPE+IMKSIIPVVMAGIIAIYGLVVAVLIA + ++ +S
Sbjct: 31 AYGTAKSGTGIAAMSVMRPEMIMKSIIPVVMAGIIAIYGLVVAVLIANSLNDGISLYRSF 90
Query: 181 RHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAL 360
IGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAL
Sbjct: 91 LQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAL 150
Query: 361 ILSTK 375
ILSTK
Sbjct: 151 ILSTK 155
>sp|O18882|VATL_SHEEP Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 155
Score = 166 bits (419), Expect = 2e-41
Identities = 91/125 (72%), Positives = 98/125 (78%)
Frame = +1
Query: 1 AYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAQQIGTNYTMEKSL 180
AYGTAKSGTGIA+M+VMRPE+IMKSIIPVVMAGIIAIYGLVVAVLIA + ++ +S
Sbjct: 31 AYGTAKSGTGIAAMSVMRPEMIMKSIIPVVMAGIIAIYGLVVAVLIANSLNDGISLYRSF 90
Query: 181 RHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAL 360
IGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAL
Sbjct: 91 LQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAL 150
Query: 361 ILSTK 375
ILSTK
Sbjct: 151 ILSTK 155
>sp|P55277|VATL_HELVI Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 156
Score = 165 bits (417), Expect = 4e-41
Identities = 93/128 (72%), Positives = 98/128 (76%), Gaps = 3/128 (2%)
Frame = +1
Query: 1 AYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAQQI---GTNYTME 171
AYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA + NYT+
Sbjct: 28 AYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSLDAPSNNYTLY 87
Query: 172 KSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLI 351
K H IGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLI
Sbjct: 88 KGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLI 147
Query: 352 VALILSTK 375
VA+ L TK
Sbjct: 148 VAIYLYTK 155
>sp|P31403|VATL_MANSE Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 156
Score = 164 bits (414), Expect = 9e-41
Identities = 92/128 (71%), Positives = 98/128 (76%), Gaps = 3/128 (2%)
Frame = +1
Query: 1 AYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAQQI---GTNYTME 171
AYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA + NYT+
Sbjct: 28 AYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSLDSPSNNYTLY 87
Query: 172 KSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLI 351
+ H IGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLI
Sbjct: 88 RGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLI 147
Query: 352 VALILSTK 375
VA+ L TK
Sbjct: 148 VAIYLYTK 155
>sp|O16110|VATL_AEDAE Vacuolar ATP synthase 16 kDa proteolipid subunit (V-ATPase
C-subunit)
Length = 157
Score = 163 bits (412), Expect = 2e-40
Identities = 92/127 (72%), Positives = 98/127 (77%), Gaps = 2/127 (1%)
Frame = +1
Query: 1 AYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAQQIG--TNYTMEK 174
AYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA + T Y++ K
Sbjct: 31 AYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSLDTPTKYSLYK 90
Query: 175 SLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV 354
H IGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV
Sbjct: 91 GFIHLGAGLAVGISGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV 150
Query: 355 ALILSTK 375
A+ L TK
Sbjct: 151 AIYLYTK 157
>sp|P23380|VATL_DROME Vacuolar ATP synthase 16 kDa proteolipid subunit (Ductin) (VHA16K)
Length = 159
Score = 159 bits (403), Expect = 2e-39
Identities = 90/127 (70%), Positives = 98/127 (77%), Gaps = 2/127 (1%)
Frame = +1
Query: 1 AYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAQQI--GTNYTMEK 174
AYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA + + Y++ +
Sbjct: 33 AYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGALEEPSKYSLYR 92
Query: 175 SLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV 354
H IGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV
Sbjct: 93 GFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV 152
Query: 355 ALILSTK 375
A+ L TK
Sbjct: 153 AIYLYTK 159
>sp|Q26250|VATL_NEPNO Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 159
Score = 155 bits (393), Expect = 2e-38
Identities = 87/127 (68%), Positives = 96/127 (75%), Gaps = 2/127 (1%)
Frame = +1
Query: 1 AYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAQQI--GTNYTMEK 174
AYGTAKSG GI++M+VMRPELIMK IIPVVMAGIIAIYGLVVAVLIA ++ YT+ +
Sbjct: 30 AYGTAKSGVGISAMSVMRPELIMKCIIPVVMAGIIAIYGLVVAVLIAGKLDEAPTYTLYQ 89
Query: 175 SLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIV 354
H IGIVGDAGVRGTAQQPRL+VGMILILIFAEVLGLYGLIV
Sbjct: 90 GFVHMGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLYVGMILILIFAEVLGLYGLIV 149
Query: 355 ALILSTK 375
A+ L TK
Sbjct: 150 AIFLYTK 156
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,141,783
Number of Sequences: 369166
Number of extensions: 696668
Number of successful extensions: 2891
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2812
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 2002648600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)