Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_B16
(614 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P61246|RS3A_FELCA 40S ribosomal protein S3a 213 4e-55
sp|P61247|RS3A_HUMAN 40S ribosomal protein S3a 213 4e-55
sp|P49242|RS3A_RAT 40S ribosomal protein S3a (V-fos transfo... 212 5e-55
sp|P97351|RS3A_MOUSE 40S ribosomal protein S3a 212 7e-55
sp|O73813|RS3A_ORYLA 40S ribosomal protein S3a (V-fos trans... 208 8e-54
sp|P49395|RS3A_APLCA 40S ribosomal protein S3a (Lysine-rich... 207 2e-53
sp|P48154|RS3A_CAEEL 40S ribosomal protein S3a 205 7e-53
sp|O43999|RS3A_EIMTE 40S ribosomal protein S3a (EtS3a) 205 9e-53
sp|P52813|RS3A_ANOGA 40S ribosomal protein S3a (C3 protein) 195 9e-50
sp|P55830|RS3A_DROME 40S ribosomal protein S3a (C3 protein) 191 2e-48
>sp|P61246|RS3A_FELCA 40S ribosomal protein S3a
Length = 260
Score = 213 bits (541), Expect = 4e-55
Identities = 105/190 (55%), Positives = 136/190 (71%), Gaps = 4/190 (2%)
Frame = +2
Query: 29 EKTEDTFRKFSLQIEDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFH 208
+ E FRKF L EDVQG CLT+F GM LT DKMCSMVKKWQT IE DVKTTD +
Sbjct: 71 QNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYL 130
Query: 209 LRVFVIAFTKKASTQLKKHTYAQAQQIKSIRDIMREVINAEISSCDIKEVVKKLCIDSIG 388
LR+F + FTKK + Q++K +YAQ QQ++ IR M E++ E+ + D+KEVV KL DSIG
Sbjct: 131 LRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIG 190
Query: 389 KDIAKKCSYIFPLQDCCVRKVKVIRKPKMDLTKLMDLHGDSATAITSTGE----IIERPD 556
KDI K C I+PL D VRKVK+++KPK +L KLM+LHG+ +++ +TG+ +ER D
Sbjct: 191 KDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERAD 250
Query: 557 GHEPPIQTSV 586
G+EPP+Q SV
Sbjct: 251 GYEPPVQESV 260
>sp|P61247|RS3A_HUMAN 40S ribosomal protein S3a
Length = 264
Score = 213 bits (541), Expect = 4e-55
Identities = 105/190 (55%), Positives = 136/190 (71%), Gaps = 4/190 (2%)
Frame = +2
Query: 29 EKTEDTFRKFSLQIEDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFH 208
+ E FRKF L EDVQG CLT+F GM LT DKMCSMVKKWQT IE DVKTTD +
Sbjct: 75 QNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYL 134
Query: 209 LRVFVIAFTKKASTQLKKHTYAQAQQIKSIRDIMREVINAEISSCDIKEVVKKLCIDSIG 388
LR+F + FTKK + Q++K +YAQ QQ++ IR M E++ E+ + D+KEVV KL DSIG
Sbjct: 135 LRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIG 194
Query: 389 KDIAKKCSYIFPLQDCCVRKVKVIRKPKMDLTKLMDLHGDSATAITSTGE----IIERPD 556
KDI K C I+PL D VRKVK+++KPK +L KLM+LHG+ +++ +TG+ +ER D
Sbjct: 195 KDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERAD 254
Query: 557 GHEPPIQTSV 586
G+EPP+Q SV
Sbjct: 255 GYEPPVQESV 264
>sp|P49242|RS3A_RAT 40S ribosomal protein S3a (V-fos transformation effector protein)
[Contains: 40S ribosomal protein S3b]
Length = 264
Score = 212 bits (540), Expect = 5e-55
Identities = 105/190 (55%), Positives = 135/190 (71%), Gaps = 4/190 (2%)
Frame = +2
Query: 29 EKTEDTFRKFSLQIEDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFH 208
+ E FRKF L EDVQG CLT+F GM LT DKMCSMVKKWQT IE DVKTTD +
Sbjct: 75 QNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYL 134
Query: 209 LRVFVIAFTKKASTQLKKHTYAQAQQIKSIRDIMREVINAEISSCDIKEVVKKLCIDSIG 388
LR+F + FTKK + Q++K +YAQ QQ++ IR M E++ E+ + D+KEVV KL DSIG
Sbjct: 135 LRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIG 194
Query: 389 KDIAKKCSYIFPLQDCCVRKVKVIRKPKMDLTKLMDLHGDSATAITSTGE----IIERPD 556
KDI K C I+PL D VRKVK+++KPK +L KLM+LHG+ ++ +TG+ +ER D
Sbjct: 195 KDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGGSSGKTTGDETGAKVERAD 254
Query: 557 GHEPPIQTSV 586
G+EPP+Q SV
Sbjct: 255 GYEPPVQESV 264
>sp|P97351|RS3A_MOUSE 40S ribosomal protein S3a
Length = 264
Score = 212 bits (539), Expect = 7e-55
Identities = 106/190 (55%), Positives = 133/190 (70%), Gaps = 4/190 (2%)
Frame = +2
Query: 29 EKTEDTFRKFSLQIEDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFH 208
+ E FRKF L EDVQG CLT+F GM LT DKMCSMVKKWQT IE DVKTTD +
Sbjct: 75 QNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYL 134
Query: 209 LRVFVIAFTKKASTQLKKHTYAQAQQIKSIRDIMREVINAEISSCDIKEVVKKLCIDSIG 388
LR+F + FTKK + Q++K +YAQ QQ++ IR M E++ E+ + D+KEVV KL DSIG
Sbjct: 135 LRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIG 194
Query: 389 KDIAKKCSYIFPLQDCCVRKVKVIRKPKMDLTKLMDLHGDSAT----AITSTGEIIERPD 556
KDI K C I+PL D VRKVK+++KPK +L KLM+LHG+ + A TG +ER D
Sbjct: 195 KDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGGSSGKAAGDETGAKVERAD 254
Query: 557 GHEPPIQTSV 586
G+EPP+Q SV
Sbjct: 255 GYEPPVQESV 264
>sp|O73813|RS3A_ORYLA 40S ribosomal protein S3a (V-fos transformation effector protein)
Length = 266
Score = 208 bits (530), Expect = 8e-54
Identities = 104/192 (54%), Positives = 132/192 (68%), Gaps = 6/192 (3%)
Frame = +2
Query: 29 EKTEDTFRKFSLQIEDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFH 208
+ E FRKF L EDVQG CLT+F GM LT DKMCSMVKKWQT IE DVKTTD +
Sbjct: 75 QNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYL 134
Query: 209 LRVFVIAFTKKASTQLKKHTYAQAQQIKSIRDIMREVINAEISSCDIKEVVKKLCIDSIG 388
LR+F + FTKK + Q++K +YAQ QQ++ IR M E++ E+ + D+KEVV KL DS+G
Sbjct: 135 LRLFCVGFTKKRNNQVRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSVG 194
Query: 389 KDIAKKCSYIFPLQDCCVRKVKVIRKPKMDLTKLMDLHGDSATAITS------TGEIIER 550
KDI K C I+PL D VRKVK+++KPK +L KLM+LHG+ + TG +ER
Sbjct: 195 KDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGAGGAAKASGDDTGAKVER 254
Query: 551 PDGHEPPIQTSV 586
DG+EPPIQ +V
Sbjct: 255 ADGYEPPIQETV 266
>sp|P49395|RS3A_APLCA 40S ribosomal protein S3a (Lysine-rich protein KRP-A)
Length = 265
Score = 207 bits (527), Expect = 2e-53
Identities = 107/191 (56%), Positives = 135/191 (70%), Gaps = 5/191 (2%)
Frame = +2
Query: 29 EKTEDTFRKFSLQIEDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFH 208
+ E TFRKF L E+VQG LT+F GM LT DK+CSMVKKWQT IE DVKTTD +
Sbjct: 75 QNDEVTFRKFKLIAEEVQGRNVLTNFSGMSLTRDKLCSMVKKWQTLIEANVDVKTTDGYL 134
Query: 209 LRVFVIAFTKKASTQLKKHTYAQAQQIKSIRDIMREVINAEISSCDIKEVVKKLCIDSIG 388
LRVF I FTKK + Q+KK YAQ Q+K+IR M E+++ E+SS D+KEVV KL DSIG
Sbjct: 135 LRVFAIGFTKKRNNQVKKTCYAQHAQVKAIRKKMVEIVSREVSSNDMKEVVNKLIPDSIG 194
Query: 389 KDIAKKCSYIFPLQDCCVRKVKVIRKPKMDLTKLMDLHGDSAT----AITST-GEIIERP 553
KDI K C I+PL D + KVKV++KPK D+ KLM+LHG+ +T +TS GE ++R
Sbjct: 195 KDIEKSCQGIYPLHDVLIHKVKVLKKPKFDVGKLMELHGEGSTTTSKGVTSEGGEKVDRV 254
Query: 554 DGHEPPIQTSV 586
DG+EPP+ +V
Sbjct: 255 DGYEPPVLQNV 265
>sp|P48154|RS3A_CAEEL 40S ribosomal protein S3a
Length = 257
Score = 205 bits (522), Expect = 7e-53
Identities = 104/190 (54%), Positives = 134/190 (70%)
Frame = +2
Query: 17 GELNEKTEDTFRKFSLQIEDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTT 196
G+LN D FRKF L EDVQG LT+F M +T DK+CS+VKKW T IE VKTT
Sbjct: 70 GDLNNSEAD-FRKFKLIAEDVQGKNVLTNFHAMSMTHDKLCSIVKKWHTLIEANTAVKTT 128
Query: 197 DNFHLRVFVIAFTKKASTQLKKHTYAQAQQIKSIRDIMREVINAEISSCDIKEVVKKLCI 376
D + LRVFVIAFTKK+ Q+KK +Y + +I+ IR M I E++ CD+KEVV KL
Sbjct: 129 DGYTLRVFVIAFTKKSVNQVKKTSYTKTSKIRKIRSEMIGCIEKEVTGCDLKEVVSKLIP 188
Query: 377 DSIGKDIAKKCSYIFPLQDCCVRKVKVIRKPKMDLTKLMDLHGDSATAITSTGEIIERPD 556
DSIGKDI K CS ++PLQ+ +RKVK+I++PK+DL +L DLHGDS T + + GE ++RPD
Sbjct: 189 DSIGKDIEKTCSKLYPLQEVYIRKVKIIKRPKVDLGRLHDLHGDSIT-VGADGEKVDRPD 247
Query: 557 GHEPPIQTSV 586
+EPP+Q V
Sbjct: 248 DYEPPVQQEV 257
>sp|O43999|RS3A_EIMTE 40S ribosomal protein S3a (EtS3a)
Length = 264
Score = 205 bits (521), Expect = 9e-53
Identities = 104/190 (54%), Positives = 131/190 (68%), Gaps = 4/190 (2%)
Frame = +2
Query: 29 EKTEDTFRKFSLQIEDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFH 208
+ E FRKF L EDVQG CLT+F GM LT DKM SMVKKWQT IE DVKTTD +
Sbjct: 75 QNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMFSMVKKWQTMIEAHVDVKTTDGYL 134
Query: 209 LRVFVIAFTKKASTQLKKHTYAQAQQIKSIRDIMREVINAEISSCDIKEVVKKLCIDSIG 388
LR+F + FTKK + Q++K +YAQ QQ++ IR M E++ E + D+KEVV KL DSIG
Sbjct: 135 LRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTGEFQTNDLKEVVNKLIPDSIG 194
Query: 389 KDIAKKCSYIFPLQDCCVRKVKVIRKPKMDLTKLMDLHGDSATAITSTGE----IIERPD 556
KDI K C I+PL D VRKVK+++KPK +L KLM+LHG+ A +G+ +ER D
Sbjct: 195 KDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGAGKPSGDEAGAKVERAD 254
Query: 557 GHEPPIQTSV 586
G+EPP+Q SV
Sbjct: 255 GYEPPVQESV 264
>sp|P52813|RS3A_ANOGA 40S ribosomal protein S3a (C3 protein)
Length = 269
Score = 195 bits (495), Expect = 9e-50
Identities = 104/189 (55%), Positives = 126/189 (66%), Gaps = 6/189 (3%)
Frame = +2
Query: 38 EDTFRKFSLQIEDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRV 217
E +FRKF L E V G LT+F GM LTTDK+ SMV KWQT IEC DVKTTD F LRV
Sbjct: 81 ERSFRKFKLVAESVNGRDVLTNFHGMALTTDKLRSMVNKWQTLIECSVDVKTTDGFMLRV 140
Query: 218 FVIAFTKKASTQLKKHTYAQAQQIKSIRDIMREVINAEISSCDIKEVVKKLCIDSIGKDI 397
F I FT K S +K YAQ QIK+IR M +I EI+S D+K VV+KL DSI KDI
Sbjct: 141 FCIGFTIKDSMSQRKTCYAQHSQIKNIRAKMTAIIKREITSTDLKGVVEKLLPDSIAKDI 200
Query: 398 AKKCSYIFPLQDCCVRKVKVIRKPKMDLTKLMDLHGDSA--TAITSTGE----IIERPDG 559
K C ++PL D +RKVKV++KP+ DL+ LM+LHGD A STG ++ RP+G
Sbjct: 201 EKACQVVYPLHDVYIRKVKVLKKPRFDLSSLMELHGDGGGKAAEVSTGAASGVVVVRPEG 260
Query: 560 HEPPIQTSV 586
+EPP+Q SV
Sbjct: 261 YEPPVQASV 269
>sp|P55830|RS3A_DROME 40S ribosomal protein S3a (C3 protein)
Length = 268
Score = 191 bits (484), Expect = 2e-48
Identities = 94/188 (50%), Positives = 124/188 (65%), Gaps = 5/188 (2%)
Frame = +2
Query: 38 EDTFRKFSLQIEDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRV 217
E +FRKF L EDVQ L +F GM LTTDK SMVKKWQT IE + KT D + LRV
Sbjct: 81 ERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRV 140
Query: 218 FVIAFTKKASTQLKKHTYAQAQQIKSIRDIMREVINAEISSCDIKEVVKKLCIDSIGKDI 397
F I FT K +K YAQ Q++ IR M ++I E+S D+K++V KL +DSI KDI
Sbjct: 141 FCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDI 200
Query: 398 AKKCSYIFPLQDCCVRKVKVIRKPKMDLTKLMDLHGDSA-----TAITSTGEIIERPDGH 562
K C I+PL D +RKVKV++KP+ D++KL++LHGD ++S G +I+RP+G+
Sbjct: 201 EKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKSVEAVVSSEGAVIDRPEGY 260
Query: 563 EPPIQTSV 586
EPP+Q SV
Sbjct: 261 EPPVQESV 268
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,632,657
Number of Sequences: 369166
Number of extensions: 1276303
Number of successful extensions: 3195
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3172
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4846822695
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)