Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_B12
(857 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q80U72|LAP4_MOUSE LAP4 protein (Scribble homolog protein) 32 3.0
sp|Q9NZW4|DSPP_HUMAN Dentin sialophosphoprotein precursor [... 30 6.6
>sp|Q80U72|LAP4_MOUSE LAP4 protein (Scribble homolog protein)
Length = 1612
Score = 31.6 bits (70), Expect = 3.0
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +1
Query: 562 KSISGDKLKDSGKFSPVRE---KRDILEEISEEDSQAPSNSPTSTEDDLLATS 711
KS+ D L+ S +E KR LE ++E S AP+ SPT ED L TS
Sbjct: 1489 KSLEQDALRAQMVLSKSQEGRGKRGPLERLAEAPSPAPTPSPTPLEDFGLQTS 1541
>sp|Q9NZW4|DSPP_HUMAN Dentin sialophosphoprotein precursor [Contains: Dentin
phosphoprotein (Dentin phosphophoryn) (DPP); Dentin
sialoprotein (DSP)]
Length = 1253
Score = 30.4 bits (67), Expect = 6.6
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +1
Query: 1 DLTRDEDKFYSGDSSPKSRKGRKHDESIEIDTSLNDSHNNSDS 129
D + D S DSS S D S D+S +DS N SDS
Sbjct: 819 DSSNSSDSSNSSDSSDSSNSSDSSDSSDSSDSSDSDSSNRSDS 861
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.304 0.126 0.344
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,424,201
Number of Sequences: 369166
Number of extensions: 1275594
Number of successful extensions: 1825
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1823
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8486520240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)