Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_B09
(791 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P68372|TBBX_MOUSE Tubulin beta-? chain >gi|55977480|sp|P... 491 e-139
sp|P11833|TBB_PARLI Tubulin beta chain (Beta tubulin) 490 e-138
sp|P30883|TBB4_XENLA Tubulin beta-4 chain 489 e-138
sp|Q9D6F9|TBB4_MOUSE Tubulin beta-4 chain 489 e-138
sp|P09206|TBB3_CHICK Tubulin beta-3 chain (Beta-tubulin cla... 488 e-138
sp|Q7JJU6|TBB2_PANTR Tubulin beta-2 chain >gi|56754798|sp|P... 487 e-137
sp|P36221|TBB1_NOTCO Tubulin beta-1 chain (Beta-1 tubulin) 486 e-137
sp|Q9YHC3|TBB1_GADMO Tubulin beta-1 chain (Beta-1 tubulin) 486 e-137
sp|P04350|TBB4_HUMAN Tubulin beta-4 chain (Tubulin 5 beta) 485 e-137
sp|P02554|TBB_PIG Tubulin beta chain 485 e-137
>sp|P68372|TBBX_MOUSE Tubulin beta-? chain
sp|P68371|TBBX_HUMAN Tubulin beta-? chain (Tubulin beta-2 chain)
Length = 445
Score = 491 bits (1264), Expect = e-139
Identities = 236/263 (89%), Positives = 242/263 (92%)
Frame = +2
Query: 2 LQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEASGGKYVPRAVLI 181
LQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEA+GGKYVPRAVL+
Sbjct: 7 LQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLV 66
Query: 182 DLEPGTMDSVRSGPFGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDAVLDTVRKEAES 361
DLEPGTMDSVRSGPFGQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELVD+VLD VRKEAES
Sbjct: 67 DLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAES 126
Query: 362 CDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMTTFSVVPSPKVSDTVVEPYNAT 541
CDCLQGFQ KIREEYPDRIM TFSVVPSPKVSDTVVEPYNAT
Sbjct: 127 CDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNAT 186
Query: 542 LSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQL 721
LSVHQLVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQL
Sbjct: 187 LSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQL 246
Query: 722 NADLRKLAVNMVPFPRLHFFMPG 790
NADLRKLAVNMVPFPRLHFFMPG
Sbjct: 247 NADLRKLAVNMVPFPRLHFFMPG 269
>sp|P11833|TBB_PARLI Tubulin beta chain (Beta tubulin)
Length = 447
Score = 490 bits (1262), Expect = e-138
Identities = 235/263 (89%), Positives = 242/263 (92%)
Frame = +2
Query: 2 LQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEASGGKYVPRAVLI 181
+QAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEA+GGKYVPRAVL+
Sbjct: 7 MQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLV 66
Query: 182 DLEPGTMDSVRSGPFGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDAVLDTVRKEAES 361
DLEPGTMDSVRSGPFGQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELVD+VLD VRKEAES
Sbjct: 67 DLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAES 126
Query: 362 CDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMTTFSVVPSPKVSDTVVEPYNAT 541
CDCLQGFQ KIREEYPDRIM TFSVVPSPKVSDTVVEPYNAT
Sbjct: 127 CDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNAT 186
Query: 542 LSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQL 721
LSVHQLVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQL
Sbjct: 187 LSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQL 246
Query: 722 NADLRKLAVNMVPFPRLHFFMPG 790
NADLRKLAVNMVPFPRLHFFMPG
Sbjct: 247 NADLRKLAVNMVPFPRLHFFMPG 269
>sp|P30883|TBB4_XENLA Tubulin beta-4 chain
Length = 445
Score = 489 bits (1259), Expect = e-138
Identities = 235/263 (89%), Positives = 241/263 (91%)
Frame = +2
Query: 2 LQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEASGGKYVPRAVLI 181
LQAGQCGNQIGAKFWEVISDEHGIDPTG YHGDSDLQLERINVYYNEA+GGKYVPRAVL+
Sbjct: 7 LQAGQCGNQIGAKFWEVISDEHGIDPTGAYHGDSDLQLERINVYYNEATGGKYVPRAVLV 66
Query: 182 DLEPGTMDSVRSGPFGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDAVLDTVRKEAES 361
DLEPGTMDSVRSGPFGQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELVD+VLD VRKEAES
Sbjct: 67 DLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAES 126
Query: 362 CDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMTTFSVVPSPKVSDTVVEPYNAT 541
CDCLQGFQ KIREEYPDRIM TFSVVPSPKVSDTVVEPYNAT
Sbjct: 127 CDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNAT 186
Query: 542 LSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQL 721
LSVHQLVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQL
Sbjct: 187 LSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQL 246
Query: 722 NADLRKLAVNMVPFPRLHFFMPG 790
NADLRKLAVNMVPFPRLHFFMPG
Sbjct: 247 NADLRKLAVNMVPFPRLHFFMPG 269
>sp|Q9D6F9|TBB4_MOUSE Tubulin beta-4 chain
Length = 444
Score = 489 bits (1258), Expect = e-138
Identities = 235/263 (89%), Positives = 241/263 (91%)
Frame = +2
Query: 2 LQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEASGGKYVPRAVLI 181
LQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEA+GG YVPRAVL+
Sbjct: 7 LQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYVPRAVLV 66
Query: 182 DLEPGTMDSVRSGPFGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDAVLDTVRKEAES 361
DLEPGTMDSVRSGPFGQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELVDAVLD VRKEAES
Sbjct: 67 DLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAES 126
Query: 362 CDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMTTFSVVPSPKVSDTVVEPYNAT 541
CDCLQGFQ KIREE+PDRIM TFSVVPSPKVSDTVVEPYNAT
Sbjct: 127 CDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKVSDTVVEPYNAT 186
Query: 542 LSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQL 721
LSVHQLVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQL
Sbjct: 187 LSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQL 246
Query: 722 NADLRKLAVNMVPFPRLHFFMPG 790
NADLRKLAVNMVPFPRLHFFMPG
Sbjct: 247 NADLRKLAVNMVPFPRLHFFMPG 269
>sp|P09206|TBB3_CHICK Tubulin beta-3 chain (Beta-tubulin class-IV)
Length = 445
Score = 488 bits (1256), Expect = e-138
Identities = 235/263 (89%), Positives = 241/263 (91%)
Frame = +2
Query: 2 LQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEASGGKYVPRAVLI 181
LQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEA+GGKYVPRAVL+
Sbjct: 7 LQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLV 66
Query: 182 DLEPGTMDSVRSGPFGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDAVLDTVRKEAES 361
DLEPGTMDSVRSGPF Q+FRPDNF+FGQSGAGNNWAKGHYTEGAELVD+VLD VRKEAES
Sbjct: 67 DLEPGTMDSVRSGPFRQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAES 126
Query: 362 CDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMTTFSVVPSPKVSDTVVEPYNAT 541
CDCLQGFQ KIREEYPDRIM TFSVVPSPKVSDTVVEPYNAT
Sbjct: 127 CDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNAT 186
Query: 542 LSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQL 721
LSVHQLVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQL
Sbjct: 187 LSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQL 246
Query: 722 NADLRKLAVNMVPFPRLHFFMPG 790
NADLRKLAVNMVPFPRLHFFMPG
Sbjct: 247 NADLRKLAVNMVPFPRLHFFMPG 269
>sp|Q7JJU6|TBB2_PANTR Tubulin beta-2 chain
sp|P69895|TBB2_MACMU Tubulin beta-2 chain
sp|P07437|TBB2_HUMAN Tubulin beta-2 chain
sp|P09244|TBB7_CHICK Tubulin beta-7 chain (Tubulin beta 4')
sp|P99024|TBB5_MOUSE Tubulin beta-5 chain
sp|P69897|TBB5_RAT Tubulin beta-5 chain
sp|P69893|TBB1_CRIGR Tubulin beta-1 chain (Beta-tubulin isotype I) (Class I beta
tubulin)
Length = 444
Score = 487 bits (1253), Expect = e-137
Identities = 232/263 (88%), Positives = 242/263 (92%)
Frame = +2
Query: 2 LQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEASGGKYVPRAVLI 181
+QAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQL+RI+VYYNEA+GGKYVPRA+L+
Sbjct: 7 IQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYVPRAILV 66
Query: 182 DLEPGTMDSVRSGPFGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDAVLDTVRKEAES 361
DLEPGTMDSVRSGPFGQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELVD+VLD VRKEAES
Sbjct: 67 DLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAES 126
Query: 362 CDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMTTFSVVPSPKVSDTVVEPYNAT 541
CDCLQGFQ KIREEYPDRIM TFSVVPSPKVSDTVVEPYNAT
Sbjct: 127 CDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNAT 186
Query: 542 LSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQL 721
LSVHQLVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQL
Sbjct: 187 LSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQL 246
Query: 722 NADLRKLAVNMVPFPRLHFFMPG 790
NADLRKLAVNMVPFPRLHFFMPG
Sbjct: 247 NADLRKLAVNMVPFPRLHFFMPG 269
>sp|P36221|TBB1_NOTCO Tubulin beta-1 chain (Beta-1 tubulin)
Length = 446
Score = 486 bits (1252), Expect = e-137
Identities = 233/263 (88%), Positives = 241/263 (91%)
Frame = +2
Query: 2 LQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEASGGKYVPRAVLI 181
LQAGQCGNQIG+KFWEVISDEHGIDPTG+YHGDSDLQL+RINVYYNEASGGKYVPRAVL+
Sbjct: 7 LQAGQCGNQIGSKFWEVISDEHGIDPTGSYHGDSDLQLDRINVYYNEASGGKYVPRAVLV 66
Query: 182 DLEPGTMDSVRSGPFGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDAVLDTVRKEAES 361
DLEPGTMDSVRSGPFGQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELVD+VLD VRKEAE
Sbjct: 67 DLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAEG 126
Query: 362 CDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMTTFSVVPSPKVSDTVVEPYNAT 541
CDCLQGFQ KIREEYPDRIM TFSVVPSPKVSDTVVEPYNAT
Sbjct: 127 CDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNAT 186
Query: 542 LSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQL 721
LSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQL
Sbjct: 187 LSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQL 246
Query: 722 NADLRKLAVNMVPFPRLHFFMPG 790
NADLRKLAVNMVPFPRLHFF+PG
Sbjct: 247 NADLRKLAVNMVPFPRLHFFIPG 269
>sp|Q9YHC3|TBB1_GADMO Tubulin beta-1 chain (Beta-1 tubulin)
Length = 445
Score = 486 bits (1251), Expect = e-137
Identities = 234/263 (88%), Positives = 241/263 (91%)
Frame = +2
Query: 2 LQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEASGGKYVPRAVLI 181
LQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQL+RINVYYNEASGGKYVPRAVL+
Sbjct: 7 LQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRINVYYNEASGGKYVPRAVLV 66
Query: 182 DLEPGTMDSVRSGPFGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDAVLDTVRKEAES 361
DLEPGTMDSVRSG FGQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELVD+VLD VRKEAES
Sbjct: 67 DLEPGTMDSVRSGAFGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAES 126
Query: 362 CDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMTTFSVVPSPKVSDTVVEPYNAT 541
CDCLQGFQ KIREEYPDRIM TFSVVPSPKVSDTVVEPYNAT
Sbjct: 127 CDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNAT 186
Query: 542 LSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQL 721
LSVHQLVENTDET+CIDNEALYDICFRTLKLTTP+YGDLNHLVSATMSGVTTCLRFPGQL
Sbjct: 187 LSVHQLVENTDETYCIDNEALYDICFRTLKLTTPSYGDLNHLVSATMSGVTTCLRFPGQL 246
Query: 722 NADLRKLAVNMVPFPRLHFFMPG 790
NADLRKLAVNMVPFPRLHFFMPG
Sbjct: 247 NADLRKLAVNMVPFPRLHFFMPG 269
>sp|P04350|TBB4_HUMAN Tubulin beta-4 chain (Tubulin 5 beta)
Length = 444
Score = 485 bits (1249), Expect = e-137
Identities = 233/262 (88%), Positives = 240/262 (91%)
Frame = +2
Query: 2 LQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEASGGKYVPRAVLI 181
LQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEA+GG YVPRAVL+
Sbjct: 7 LQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYVPRAVLV 66
Query: 182 DLEPGTMDSVRSGPFGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDAVLDTVRKEAES 361
DLEPGTMDSVRSGPFGQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELVDAVLD VRKEAES
Sbjct: 67 DLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAES 126
Query: 362 CDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMTTFSVVPSPKVSDTVVEPYNAT 541
CDCLQGFQ K+REE+PDRIM TFSVVPSPKVSDTVVEPYNAT
Sbjct: 127 CDCLQGFQLTHSLGGGTGSGMGTLLISKMREEFPDRIMNTFSVVPSPKVSDTVVEPYNAT 186
Query: 542 LSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQL 721
LSVHQLVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQL
Sbjct: 187 LSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQL 246
Query: 722 NADLRKLAVNMVPFPRLHFFMP 787
NADLRKLAVNMVPFPRLHFFMP
Sbjct: 247 NADLRKLAVNMVPFPRLHFFMP 268
>sp|P02554|TBB_PIG Tubulin beta chain
Length = 445
Score = 485 bits (1248), Expect = e-137
Identities = 231/263 (87%), Positives = 241/263 (91%)
Frame = +2
Query: 2 LQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEASGGKYVPRAVLI 181
+QAGQCGNQIGAKFWEVISDEHGIDPTG+YHGDSDLQLERINVYYNEA+G KYVPRA+L+
Sbjct: 7 IQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILV 66
Query: 182 DLEPGTMDSVRSGPFGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDAVLDTVRKEAES 361
DLEPGTMDSVRSGPFGQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELVD+VLD VRKE+ES
Sbjct: 67 DLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESES 126
Query: 362 CDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMTTFSVVPSPKVSDTVVEPYNAT 541
CDCLQGFQ KIREEYPDRIM TFSVVPSPKVSDTVVEPYNAT
Sbjct: 127 CDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNAT 186
Query: 542 LSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQL 721
LSVHQLVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQL
Sbjct: 187 LSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQL 246
Query: 722 NADLRKLAVNMVPFPRLHFFMPG 790
NADLRKLAVNMVPFPRLHFFMPG
Sbjct: 247 NADLRKLAVNMVPFPRLHFFMPG 269
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,868,513
Number of Sequences: 369166
Number of extensions: 1885309
Number of successful extensions: 5639
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5087
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7425705210
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)