Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_B05
(843 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9CZU6|CISY_MOUSE Citrate synthase, mitochondrial precursor 390 e-108
sp|P00889|CISY_PIG Citrate synthase, mitochondrial precursor 388 e-107
sp|O75390|CISY_HUMAN Citrate synthase, mitochondrial precursor 387 e-107
sp|P34575|CISY_CAEEL Probable citrate synthase, mitochondri... 383 e-106
sp|P23007|CISY_CHICK Citrate synthase, mitochondrial 378 e-104
sp|P51044|CISY_ASPNG Citrate synthase, mitochondrial precursor 330 4e-90
sp|O80433|CISY_DAUCA Citrate synthase, mitochondrial precursor 329 7e-90
sp|P20115|CISY4_ARATH Citrate synthase 4, mitochondrial pre... 327 3e-89
sp|O00098|CISY_EMENI Citrate synthase, mitochondrial precursor 324 2e-88
sp|P00890|CISY1_YEAST Citrate synthase, mitochondrial precu... 320 2e-87
>sp|Q9CZU6|CISY_MOUSE Citrate synthase, mitochondrial precursor
Length = 464
Score = 390 bits (1002), Expect = e-108
Identities = 184/266 (69%), Positives = 223/266 (83%)
Frame = +1
Query: 1 EWASRADLPGHVVSMINNFPSSLHPMSQLVAASAALNSESKFVKAYHEGVSKSVYWETVY 180
EWA RA LP HVV+M++NFP++LHPMSQL AA ALNSES F +AY EG++++ YWE +Y
Sbjct: 140 EWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGMNRAKYWELIY 199
Query: 181 EDSMDLIAKLSTVAAMIYRNLYRDGTSVGCIDNSKDWSENFVRMIGYEDPSFTELMRLYL 360
ED MDLIAKL VAA IYRNLYR+G+S+G ID+ DWS NF M+GY DP FTELMRLYL
Sbjct: 200 EDCMDLIAKLPCVAAKIYRNLYREGSSIGAIDSRLDWSHNFTNMLGYTDPQFTELMRLYL 259
Query: 361 TIHSDHEGGNVSAHTCHLVGSALSDPYLSYAAAMCGLAGPLHGLANQEVLLWVQKMIEVI 540
TIHSDHEGGNVSAHT HLVGSALSDPYLS+AAAM GLAGPLHGLANQEVL+W+ ++ + +
Sbjct: 260 TIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQKEV 319
Query: 541 GTKPTDKDIVEFIEKTLKAGQVVPGYGHAVLRKTDPRYMCQREFALKHLPDYPLFKVVSQ 720
G +D+ + ++I TL +G+VVPGYGHAVLRKTDPRY CQREFALKHLP P+FK+V+Q
Sbjct: 320 GKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYSCQREFALKHLPKDPMFKLVAQ 379
Query: 721 LYQIVPDVLGKKSKIANPFPNVDAHS 798
LY+IVP++L ++ K NP+PNVDAHS
Sbjct: 380 LYKIVPNILLEQGKAKNPWPNVDAHS 405
Score = 32.0 bits (71), Expect = 2.2
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +3
Query: 801 VLLQYYGMTETNYY 842
VLLQYYGMTE NYY
Sbjct: 407 VLLQYYGMTEMNYY 420
>sp|P00889|CISY_PIG Citrate synthase, mitochondrial precursor
Length = 464
Score = 388 bits (996), Expect = e-107
Identities = 184/266 (69%), Positives = 221/266 (83%)
Frame = +1
Query: 1 EWASRADLPGHVVSMINNFPSSLHPMSQLVAASAALNSESKFVKAYHEGVSKSVYWETVY 180
EWA RA LP HVV+M++NFP++LHPMSQL AA ALNSES F +AY EG+ ++ YWE +Y
Sbjct: 140 EWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGIHRTKYWELIY 199
Query: 181 EDSMDLIAKLSTVAAMIYRNLYRDGTSVGCIDNSKDWSENFVRMIGYEDPSFTELMRLYL 360
ED MDLIAKL VAA IYRNLYR+G+S+G ID+ DWS NF M+GY D FTELMRLYL
Sbjct: 200 EDCMDLIAKLPCVAAKIYRNLYREGSSIGAIDSKLDWSHNFTNMLGYTDAQFTELMRLYL 259
Query: 361 TIHSDHEGGNVSAHTCHLVGSALSDPYLSYAAAMCGLAGPLHGLANQEVLLWVQKMIEVI 540
TIHSDHEGGNVSAHT HLVGSALSDPYLS+AAAM GLAGPLHGLANQEVL+W+ ++ + +
Sbjct: 260 TIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQKEV 319
Query: 541 GTKPTDKDIVEFIEKTLKAGQVVPGYGHAVLRKTDPRYMCQREFALKHLPDYPLFKVVSQ 720
G +D+ + ++I TL +G+VVPGYGHAVLRKTDPRY CQREFALKHLP P+FK+V+Q
Sbjct: 320 GKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPHDPMFKLVAQ 379
Query: 721 LYQIVPDVLGKKSKIANPFPNVDAHS 798
LY+IVP+VL ++ K NP+PNVDAHS
Sbjct: 380 LYKIVPNVLLEQGKAKNPWPNVDAHS 405
Score = 32.0 bits (71), Expect = 2.2
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +3
Query: 801 VLLQYYGMTETNYY 842
VLLQYYGMTE NYY
Sbjct: 407 VLLQYYGMTEMNYY 420
>sp|O75390|CISY_HUMAN Citrate synthase, mitochondrial precursor
Length = 466
Score = 387 bits (995), Expect = e-107
Identities = 183/266 (68%), Positives = 223/266 (83%)
Frame = +1
Query: 1 EWASRADLPGHVVSMINNFPSSLHPMSQLVAASAALNSESKFVKAYHEGVSKSVYWETVY 180
EWA RA LP HVV+M++NFP++LHPMSQL AA ALNSES F +AY +G+S++ YWE +Y
Sbjct: 140 EWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAVTALNSESNFARAYAQGISRTKYWELIY 199
Query: 181 EDSMDLIAKLSTVAAMIYRNLYRDGTSVGCIDNSKDWSENFVRMIGYEDPSFTELMRLYL 360
EDSMDLIAKL VAA IYRNLYR+G+ +G ID++ DWS NF M+GY D FTEL RLYL
Sbjct: 200 EDSMDLIAKLPCVAAKIYRNLYREGSGIGAIDSNLDWSHNFTNMLGYTDHQFTELTRLYL 259
Query: 361 TIHSDHEGGNVSAHTCHLVGSALSDPYLSYAAAMCGLAGPLHGLANQEVLLWVQKMIEVI 540
TIHSDHEGGNVSAHT HLVGSALSDPYLS+AAAM GLAGPLHGLANQEVL+W+ ++ + +
Sbjct: 260 TIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQKEV 319
Query: 541 GTKPTDKDIVEFIEKTLKAGQVVPGYGHAVLRKTDPRYMCQREFALKHLPDYPLFKVVSQ 720
G +D+ + ++I TL +G+VVPGYGHAVLRKTDPRY CQREFALKHLP+ P+FK+V+Q
Sbjct: 320 GKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPNDPMFKLVAQ 379
Query: 721 LYQIVPDVLGKKSKIANPFPNVDAHS 798
LY+IVP+VL ++ K NP+PNVDAHS
Sbjct: 380 LYKIVPNVLLEQGKAKNPWPNVDAHS 405
Score = 32.0 bits (71), Expect = 2.2
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +3
Query: 801 VLLQYYGMTETNYY 842
VLLQYYGMTE NYY
Sbjct: 407 VLLQYYGMTEMNYY 420
>sp|P34575|CISY_CAEEL Probable citrate synthase, mitochondrial precursor
Length = 468
Score = 383 bits (984), Expect = e-106
Identities = 184/266 (69%), Positives = 220/266 (82%)
Frame = +1
Query: 1 EWASRADLPGHVVSMINNFPSSLHPMSQLVAASAALNSESKFVKAYHEGVSKSVYWETVY 180
EW +RADLP HVV M++NFP +LHPM+Q +AA AALN+ESKF AY GV+K+ YWE Y
Sbjct: 142 EWNARADLPTHVVRMLDNFPDNLHPMAQFIAAIAALNNESKFAGAYARGVAKASYWEYAY 201
Query: 181 EDSMDLIAKLSTVAAMIYRNLYRDGTSVGCIDNSKDWSENFVRMIGYEDPSFTELMRLYL 360
EDSMDL+AKL TVAA+IYRNLYRDG++V ID KDWS NF M+GY+DP F ELMRLYL
Sbjct: 202 EDSMDLLAKLPTVAAIIYRNLYRDGSAVSVIDPKKDWSANFSSMLGYDDPLFAELMRLYL 261
Query: 361 TIHSDHEGGNVSAHTCHLVGSALSDPYLSYAAAMCGLAGPLHGLANQEVLLWVQKMIEVI 540
IHSDHEGGNVSAHT HLVGSALSDPYLS++AAM GLAGPLHGLANQEVL+++ K++ I
Sbjct: 262 VIHSDHEGGNVSAHTSHLVGSALSDPYLSFSAAMAGLAGPLHGLANQEVLVFLNKIVGEI 321
Query: 541 GTKPTDKDIVEFIEKTLKAGQVVPGYGHAVLRKTDPRYMCQREFALKHLPDYPLFKVVSQ 720
G T++ + E++ K LK+GQVVPGYGHAVLRKTDPRY CQREFALKHLP+ LFK+VS
Sbjct: 322 GFNYTEEQLKEWVWKHLKSGQVVPGYGHAVLRKTDPRYECQREFALKHLPNDDLFKLVST 381
Query: 721 LYQIVPDVLGKKSKIANPFPNVDAHS 798
LY+I P +L ++ K NP+PNVD+HS
Sbjct: 382 LYKITPGILLEQGKAKNPWPNVDSHS 407
>sp|P23007|CISY_CHICK Citrate synthase, mitochondrial
Length = 433
Score = 378 bits (971), Expect = e-104
Identities = 183/266 (68%), Positives = 215/266 (80%)
Frame = +1
Query: 1 EWASRADLPGHVVSMINNFPSSLHPMSQLVAASAALNSESKFVKAYHEGVSKSVYWETVY 180
EWA RA LP HVV+M++NFP++LHPMSQL AA ALNSES F +AY EG+ ++ YWE VY
Sbjct: 113 EWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGILRTKYWEMVY 172
Query: 181 EDSMDLIAKLSTVAAMIYRNLYRDGTSVGCIDNSKDWSENFVRMIGYEDPSFTELMRLYL 360
E +MDLIAKL VAA IYRNLYR G+S+G ID+ DWS NF M+GY D FTELMRLYL
Sbjct: 173 ESAMDLIAKLPCVAAKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLGYTDAQFTELMRLYL 232
Query: 361 TIHSDHEGGNVSAHTCHLVGSALSDPYLSYAAAMCGLAGPLHGLANQEVLLWVQKMIEVI 540
TIHSDHEGGNVSAHT HLVGSALSDPYLS+AAAM GLAGPLHGLANQEVL W+ ++ +
Sbjct: 233 TIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLGWLAQLQKAX 292
Query: 541 GTKPTDKDIVEFIEKTLKAGQVVPGYGHAVLRKTDPRYMCQREFALKHLPDYPLFKVVSQ 720
D + ++I TL +G+VVPGYGHAVLRKTDPRY CQREFALKHLP P+FK+V+Q
Sbjct: 293 XXAGADASLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPGDPMFKLVAQ 352
Query: 721 LYQIVPDVLGKKSKIANPFPNVDAHS 798
LY+IVP+VL ++ ANP+PNVDAHS
Sbjct: 353 LYKIVPNVLLEQGAAANPWPNVDAHS 378
Score = 32.0 bits (71), Expect = 2.2
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +3
Query: 801 VLLQYYGMTETNYY 842
VLLQYYGMTE NYY
Sbjct: 380 VLLQYYGMTEMNYY 393
>sp|P51044|CISY_ASPNG Citrate synthase, mitochondrial precursor
Length = 475
Score = 330 bits (845), Expect = 4e-90
Identities = 167/267 (62%), Positives = 198/267 (74%), Gaps = 1/267 (0%)
Frame = +1
Query: 1 EWASRADLPGHVVSMINNFPSSLHPMSQLVAASAALNSESKFVKAYHEGVSKSVYWETVY 180
EWA+R+DLP + +I+ PS+LHPMSQ A AL ES F KAY +G++K YW +
Sbjct: 149 EWAARSDLPKFIEELIDRCPSTLHPMSQFSLAVTALEHESAFAKAYAKGINKKDYWNYTF 208
Query: 181 EDSMDLIAKLSTVAAMIYRNLYRDGTSVGCIDNSKDWSENFVRMIGYEDPS-FTELMRLY 357
EDSMDLIAKL T+AA IYRN+++DG V I KD+S N +GY D + F ELMRLY
Sbjct: 209 EDSMDLIAKLPTIAAKIYRNVFKDG-KVAPIQKDKDYSYNLANQLGYGDNNDFVELMRLY 267
Query: 358 LTIHSDHEGGNVSAHTCHLVGSALSDPYLSYAAAMCGLAGPLHGLANQEVLLWVQKMIEV 537
LTIHSDHEGGNVSAHT HLVGSALS P LS AA + GLAGPLHGLANQEVL W+ KM
Sbjct: 268 LTIHSDHEGGNVSAHTTHLVGSALSSPMLSLAAGLNGLAGPLHGLANQEVLNWLTKMKAA 327
Query: 538 IGTKPTDKDIVEFIEKTLKAGQVVPGYGHAVLRKTDPRYMCQREFALKHLPDYPLFKVVS 717
IG +D+ I ++ TL AGQVVPGYGHAVLRKTDPRY+ QREFAL+ LPD P+FK+VS
Sbjct: 328 IGNDLSDEAIKNYLWSTLNAGQVVPGYGHAVLRKTDPRYVSQREFALRKLPDDPMFKLVS 387
Query: 718 QLYQIVPDVLGKKSKIANPFPNVDAHS 798
Q+Y+I P VL + K NP+PNVDAHS
Sbjct: 388 QVYKIAPGVLTEHGKTKNPYPNVDAHS 414
Score = 31.2 bits (69), Expect = 3.7
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +3
Query: 801 VLLQYYGMTETNYY 842
VLLQYYG+TE NYY
Sbjct: 416 VLLQYYGLTEANYY 429
>sp|O80433|CISY_DAUCA Citrate synthase, mitochondrial precursor
Length = 472
Score = 329 bits (843), Expect = 7e-90
Identities = 157/266 (59%), Positives = 200/266 (75%)
Frame = +1
Query: 1 EWASRADLPGHVVSMINNFPSSLHPMSQLVAASAALNSESKFVKAYHEGVSKSVYWETVY 180
E SRA +P HV I+ P + HPM+Q AL +S+F KAY +G+ K+ YWE Y
Sbjct: 148 ELRSRAAVPEHVYKTIDALPVTAHPMTQFATGVMALQVQSEFQKAYEKGIHKTKYWEPTY 207
Query: 181 EDSMDLIAKLSTVAAMIYRNLYRDGTSVGCIDNSKDWSENFVRMIGYEDPSFTELMRLYL 360
EDS+ LIA+L VAA IYR +Y++G S+ D+S D+ NF M+GY+ PS ELMRLY+
Sbjct: 208 EDSITLIAQLPVVAAYIYRRMYKNGQSIST-DDSLDYGANFAHMLGYDSPSMQELMRLYV 266
Query: 361 TIHSDHEGGNVSAHTCHLVGSALSDPYLSYAAAMCGLAGPLHGLANQEVLLWVQKMIEVI 540
TIH+DHEGGNVSAHT HLV SALSDPYLS+AAA+ GLAGPLHGLANQEVLLW++ ++
Sbjct: 267 TIHTDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVSEC 326
Query: 541 GTKPTDKDIVEFIEKTLKAGQVVPGYGHAVLRKTDPRYMCQREFALKHLPDYPLFKVVSQ 720
G T + + ++I KTL +G+VVPGYGH VLR TDPRY+CQREFALKHLPD PLF++VS
Sbjct: 327 GENVTKEQLKDYIWKTLNSGKVVPGYGHGVLRNTDPRYICQREFALKHLPDDPLFQLVSN 386
Query: 721 LYQIVPDVLGKKSKIANPFPNVDAHS 798
L+++VP +L + K+ NP+PNVDAHS
Sbjct: 387 LFEVVPPILTELGKVKNPWPNVDAHS 412
>sp|P20115|CISY4_ARATH Citrate synthase 4, mitochondrial precursor
Length = 474
Score = 327 bits (838), Expect = 3e-89
Identities = 154/264 (58%), Positives = 203/264 (76%)
Frame = +1
Query: 7 ASRADLPGHVVSMINNFPSSLHPMSQLVAASAALNSESKFVKAYHEGVSKSVYWETVYED 186
A+RA +P +V + I+ PS+ HPM+Q + AL +S+F KAY G+ KS +WE YED
Sbjct: 150 ANRAAVPDYVYNAIDALPSTAHPMTQFASGVMALQVQSEFQKAYENGIHKSKFWEPTYED 209
Query: 187 SMDLIAKLSTVAAMIYRNLYRDGTSVGCIDNSKDWSENFVRMIGYEDPSFTELMRLYLTI 366
++LIA++ VAA +YR +Y++G S+ D S D+ NF M+G++D ELMRLY+TI
Sbjct: 210 CLNLIARVPVVAAYVYRRMYKNGDSIPS-DKSLDYGANFSHMLGFDDEKVKELMRLYITI 268
Query: 367 HSDHEGGNVSAHTCHLVGSALSDPYLSYAAAMCGLAGPLHGLANQEVLLWVQKMIEVIGT 546
HSDHEGGNVSAHT HLVGSALSDPYLS+AAA+ GLAGPLHGLANQEVLLW++ ++E G
Sbjct: 269 HSDHEGGNVSAHTGHLVGSALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVEECGE 328
Query: 547 KPTDKDIVEFIEKTLKAGQVVPGYGHAVLRKTDPRYMCQREFALKHLPDYPLFKVVSQLY 726
+ + + E++ KTL +G+V+PGYGH VLR TDPRY+CQREFALKHLPD PLF++VS+LY
Sbjct: 329 DISKEQLKEYVWKTLNSGKVIPGYGHGVLRNTDPRYVCQREFALKHLPDDPLFQLVSKLY 388
Query: 727 QIVPDVLGKKSKIANPFPNVDAHS 798
++VP VL + K+ NP+PNVDAHS
Sbjct: 389 EVVPPVLTELGKVKNPWPNVDAHS 412
>sp|O00098|CISY_EMENI Citrate synthase, mitochondrial precursor
Length = 474
Score = 324 bits (831), Expect = 2e-88
Identities = 162/267 (60%), Positives = 198/267 (74%), Gaps = 1/267 (0%)
Frame = +1
Query: 1 EWASRADLPGHVVSMINNFPSSLHPMSQLVAASAALNSESKFVKAYHEGVSKSVYWETVY 180
EWA+R+DLP + +I+ PS+LHPM+Q A AL ES F KA +G++K YW +
Sbjct: 149 EWAARSDLPKFIEELIDRVPSTLHPMAQFSLAVTALEHESAFAKATAKGINKKEYWHYTF 208
Query: 181 EDSMDLIAKLSTVAAMIYRNLYRDGTSVGCIDNSKDWSENFVRMIGYED-PSFTELMRLY 357
EDSMDLIAKL T+AA IYRN+++DG V I KD+S N +G+ D F ELMRLY
Sbjct: 209 EDSMDLIAKLPTIAAKIYRNVFKDG-KVAPIQKDKDYSYNLANQLGFADNKDFVELMRLY 267
Query: 358 LTIHSDHEGGNVSAHTCHLVGSALSDPYLSYAAAMCGLAGPLHGLANQEVLLWVQKMIEV 537
LTIHSDHEGGNVSAHT HLVGSALS P LS AA + GLAGPLHGLANQEVL W+ +M +V
Sbjct: 268 LTIHSDHEGGNVSAHTTHLVGSALSSPMLSLAAGLNGLAGPLHGLANQEVLNWLTEMKKV 327
Query: 538 IGTKPTDKDIVEFIEKTLKAGQVVPGYGHAVLRKTDPRYMCQREFALKHLPDYPLFKVVS 717
+G +D+ I +++ TL AG+VVPGYGHAVLRKTDPRY QREFAL+ LPD P+FK+VS
Sbjct: 328 VGNDLSDQSIKDYLWSTLNAGRVVPGYGHAVLRKTDPRYTSQREFALRKLPDDPMFKLVS 387
Query: 718 QLYQIVPDVLGKKSKIANPFPNVDAHS 798
Q+Y+I P VL + K NP+PNVDAHS
Sbjct: 388 QVYKIAPGVLTEHGKTKNPYPNVDAHS 414
Score = 31.2 bits (69), Expect = 3.7
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +3
Query: 801 VLLQYYGMTETNYY 842
VLLQYYG+TE NYY
Sbjct: 416 VLLQYYGLTEANYY 429
>sp|P00890|CISY1_YEAST Citrate synthase, mitochondrial precursor
Length = 479
Score = 320 bits (821), Expect = 2e-87
Identities = 153/264 (57%), Positives = 197/264 (74%)
Frame = +1
Query: 7 ASRADLPGHVVSMINNFPSSLHPMSQLVAASAALNSESKFVKAYHEGVSKSVYWETVYED 186
A+R+++P HV+ ++++ P LHPM+Q A AL SESKF KAY +GVSK YW +ED
Sbjct: 154 AARSEIPEHVIQLLDSLPKDLHPMAQFSIAVTALESESKFAKAYAQGVSKKEYWSYTFED 213
Query: 187 SMDLIAKLSTVAAMIYRNLYRDGTSVGCIDNSKDWSENFVRMIGYEDPSFTELMRLYLTI 366
S+DL+ KL +A+ IYRN+++DG + D + D+ +N +++GYE+ F +LMRLYLTI
Sbjct: 214 SLDLLGKLPVIASKIYRNVFKDG-KITSTDPNADYGKNLAQLLGYENKDFIDLMRLYLTI 272
Query: 367 HSDHEGGNVSAHTCHLVGSALSDPYLSYAAAMCGLAGPLHGLANQEVLLWVQKMIEVIGT 546
HSDHEGGNVSAHT HLVGSALS PYLS AA + GLAGPLHG ANQEVL W+ K+ E +
Sbjct: 273 HSDHEGGNVSAHTTHLVGSALSSPYLSLAAGLNGLAGPLHGRANQEVLEWLFKLREEVKG 332
Query: 547 KPTDKDIVEFIEKTLKAGQVVPGYGHAVLRKTDPRYMCQREFALKHLPDYPLFKVVSQLY 726
+ + I +++ TL AG+VVPGYGHAVLRKTDPRY QREFALKH PDY LFK+VS +Y
Sbjct: 333 DYSKETIEKYLWDTLNAGRVVPGYGHAVLRKTDPRYTAQREFALKHFPDYELFKLVSTIY 392
Query: 727 QIVPDVLGKKSKIANPFPNVDAHS 798
++ P VL K K NP+PNVD+HS
Sbjct: 393 EVAPGVLTKHGKTKNPWPNVDSHS 416
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,958,337
Number of Sequences: 369166
Number of extensions: 2140263
Number of successful extensions: 6024
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5880
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8245425915
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)