Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_A15
(344 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9MUY3|MATK_ARUDO Maturase K (Intron maturase) 29 3.8
sp|P34670|YO14_CAEEL Hypothetical zinc finger protein ZK686... 28 6.6
>sp|Q9MUY3|MATK_ARUDO Maturase K (Intron maturase)
Length = 513
Score = 28.9 bits (63), Expect = 3.8
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +2
Query: 125 FSILFLFLPNEEVFPIFQFLVE-HLIYSLKMESY-HLHFVSNLSI 253
FS+ LF P E+ P FQ L H I+ + + HLH++S++ I
Sbjct: 111 FSLGELFCPEEKQIPKFQNLQSIHSIFPFLEDKFLHLHYLSHIEI 155
>sp|P34670|YO14_CAEEL Hypothetical zinc finger protein ZK686.4 in chromosome III
Length = 407
Score = 28.1 bits (61), Expect = 6.6
Identities = 12/35 (34%), Positives = 25/35 (71%)
Frame = +3
Query: 240 QISQLIKSQLEDETAKYASMLKIEPTENKEREKDT 344
Q+ QL++ +++E A+ A K + T+N++R++DT
Sbjct: 341 QVEQLLED-VQEEEARMADFKKDKKTDNRKRKRDT 374
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,772,880
Number of Sequences: 369166
Number of extensions: 440095
Number of successful extensions: 1119
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1119
length of database: 68,354,980
effective HSP length: 82
effective length of database: 53,206,710
effective search space used: 1702614720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)