Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_A04
(616 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8TDY2|RBCC1_HUMAN RB1-inducible coiled-coil protein 1 45 1e-04
sp|Q9UTR7|MCP3_SCHPO Meiotic coiled-coil protein 3 43 7e-04
sp|P39922|MYS3_HYDAT Myosin heavy chain, clone 203 38 0.018
sp|P50532|SMC4_XENLA Structural maintenance of chromosome 4... 37 0.040
sp|P22620|ABRA_PLAFC 101 kDa malaria antigen (P101) (Acidic... 37 0.052
sp|Q58817|RFCS_METJA Replication factor C small subunit (RF... 36 0.068
sp|P23746|ABRA_PLAFF 101 kDa malaria antigen (P101) (Acidic... 36 0.089
sp|P18011|IPAB_SHIFL Invasin ipaB (62 kDa antigen) 35 0.12
sp|P05659|MYSN_ACACA Myosin II heavy chain, non muscle 35 0.12
sp|Q03945|IPAB_SHIDY Invasin ipaB (62 kDa antigen) 35 0.20
>sp|Q8TDY2|RBCC1_HUMAN RB1-inducible coiled-coil protein 1
Length = 1594
Score = 45.4 bits (106), Expect = 1e-04
Identities = 26/80 (32%), Positives = 48/80 (60%), Gaps = 5/80 (6%)
Frame = +2
Query: 155 DKLCSAEHKRVEYESQLIFIKDELTKIKSIQNEAGEVETNLKESIRKVQEKLET-----E 319
D+ S R E ES ++ K EL K+ S+ N+A E+E NLKE I ++Q KL++ E
Sbjct: 1134 DQCISELISRHEEESNIL--KAELNKVTSLHNQAFEIEKNLKEQIIELQSKLDSELSALE 1191
Query: 320 KESHNRLSEVTKNYHSILKS 379
++ ++++ + Y +I+++
Sbjct: 1192 RQKDEKITQQEEKYEAIIQN 1211
>sp|Q9UTR7|MCP3_SCHPO Meiotic coiled-coil protein 3
Length = 952
Score = 42.7 bits (99), Expect = 7e-04
Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 15/138 (10%)
Frame = +2
Query: 59 DKLVEL-SKGNKAF---FEESDGQEMISRNGNLDLLDKLCSAEHKRVEYESQLIFIKDEL 226
DK V L SK N A F ++++ ++ ++ + L AE+K + YE +L ++ +
Sbjct: 259 DKYVCLVSKHNNALEDKFNSEAARQLLQKSLSI-VASNLKQAENKTISYEEKLSIAQNSI 317
Query: 227 TKIKSIQNEAGEVETN--------LKESIRKVQEKLETEKESHNRLSEVTKNYHSILKSA 382
+I++ QN ++ET L E + +QE LET K L E+ NY + +K A
Sbjct: 318 NEIQT-QNRDLKLETEKLQDQIKALLERNQSLQEALETVKNDEKNLREMNANYETEMKEA 376
Query: 383 S---DNMSVSIKTINDQF 427
+N I +D F
Sbjct: 377 RQKLNNKEALISHYDDDF 394
>sp|P39922|MYS3_HYDAT Myosin heavy chain, clone 203
Length = 539
Score = 38.1 bits (87), Expect = 0.018
Identities = 32/148 (21%), Positives = 72/148 (48%), Gaps = 17/148 (11%)
Frame = +2
Query: 5 IEGSEEDIAFLKDR----RFALDKLVELSKGNKAFFEESDGQEMISRNGNLDLLDK---- 160
++G E + L+++ +D+L E ++ ++ + ++ +R+ +D L++
Sbjct: 129 LDGEEHSVLVLEEKIQEAEEKIDELTEKTEELQSNISRLETEKQ-NRDKQIDTLNEDIRK 187
Query: 161 ------LCSAEHKRVEYESQLIFIKDELTKIKSIQ---NEAGEVETNLKESIRKVQEKLE 313
+AE K V+ E +KD ++++ + N + + L+ SIR++++ L+
Sbjct: 188 QDETISKMNAEKKHVDEE-----LKDRTEQLQAAEDKCNNLNKTKNKLESSIREIEQDLK 242
Query: 314 TEKESHNRLSEVTKNYHSILKSASDNMS 397
EK+S +L + K S LK D +S
Sbjct: 243 KEKDSKMKLEKEKKKVESDLKDNRDKLS 270
Score = 32.0 bits (71), Expect = 1.3
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Frame = +2
Query: 185 VEYESQLIFIKDELTKIKSIQNEAGEVETNLKESIRKVQEKLETEKESHNRLSEVTKNYH 364
+ E +L+ ++ K++S NEA E + S+ ++EK++ +E + L+E T+
Sbjct: 102 ITIEDKLLNLQTVKDKLESSLNEALEKLDGEEHSVLVLEEKIQEAEEKIDELTEKTEELQ 161
Query: 365 ---SILKSASDNMSVSIKTIND 421
S L++ N I T+N+
Sbjct: 162 SNISRLETEKQNRDKQIDTLNE 183
Score = 29.3 bits (64), Expect = 8.4
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Frame = +2
Query: 170 AEHKRVEYESQLIFIKDE--LTKIKSIQNEAGEVETNLKESIRKVQEKLETEKESHNRLS 343
AE R+ E + + I ++ ++ IK+ N E+++K + KLE EK + N
Sbjct: 372 AECNRLRKEIEALNIANDAAISAIKAKTNATIAEIQEENEAMKKAKAKLEKEKSALNNEL 431
Query: 344 EVTKNYHSILKSASDNMSVSIKTINDQ 424
TKN +K N + + + +Q
Sbjct: 432 NETKNSLDQIKKQKTNSDKNSRMLEEQ 458
>sp|P50532|SMC4_XENLA Structural maintenance of chromosome 4 (Chromosome-associated
protein C) (Chromosome assembly protein XCAP-C)
Length = 1290
Score = 37.0 bits (84), Expect = 0.040
Identities = 33/144 (22%), Positives = 71/144 (49%), Gaps = 4/144 (2%)
Frame = +2
Query: 2 VIEGSEEDIAFLKDRRFALDKLVELSKGNKAFFEESDGQEMISRNGNLDLLDKLCSAEHK 181
++E +E LKD L+K+ + + N+ F + D Q++ +R +KL ++ K
Sbjct: 352 LLETMKEKNKALKDVEKQLNKITKFIEENREKFTQLDLQDVDTR-------EKLKHSKSK 404
Query: 182 RVEYESQLIFIKDELTKIKSIQNEAGEV---ETNLKESIRKVQEKLETE-KESHNRLSEV 349
+ + QL K+++ ++K++ + ++ ETN K+ + K +EK E + K + L +
Sbjct: 405 VKKLQKQLQKDKEKVDELKNVPANSQKIIAEETNKKDLLEKQKEKEEEKLKNVMDSLKKE 464
Query: 350 TKNYHSILKSASDNMSVSIKTIND 421
T+ + + KT+N+
Sbjct: 465 TQGLQEEKEVKEKELMEISKTVNE 488
>sp|P22620|ABRA_PLAFC 101 kDa malaria antigen (P101) (Acidic basic repeat antigen)
Length = 743
Score = 36.6 bits (83), Expect = 0.052
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 6/120 (5%)
Frame = +2
Query: 5 IEGSEEDIAFLKDRRFAL-DKLVELSKGNK---AFFEESDGQEMISRNGNLDLLDKLCSA 172
IE DI +K A+ ++L+ + GNK F+++ + + + ++K A
Sbjct: 598 IEAINNDIQIIKQELQAIYNELMNYTNGNKNIQQIFQQNILENDVLNQETEEEMEKQVEA 657
Query: 173 EHKRVEYESQLIFIK--DELTKIKSIQNEAGEVETNLKESIRKVQEKLETEKESHNRLSE 346
K++E E + K +E K K + E E E KE K +EK E EKE + E
Sbjct: 658 ITKQIEAEVDALAPKNKEEEEKEKEKEKEKEEKEKEEKEKEEKEKEKEEKEKEKEEKEEE 717
>sp|Q58817|RFCS_METJA Replication factor C small subunit (RFC small subunit) (Clamp loader
small subunit) [Contains: Mja RFC-1 intein; Mja RFC-2
intein; Mja RFC-3 intein]
Length = 1847
Score = 36.2 bits (82), Expect = 0.068
Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 11/123 (8%)
Frame = +2
Query: 86 NKAFFEESDGQEMISRNGNLDLLDKLCSAEHKRVEYESQLIFIKDELTKIKSIQNEAGEV 265
+K +FE +D EM + NL++ L E+ RV + I+ ++ KI I+ E G +
Sbjct: 651 DKIYFETNDENEMYKKVDNLEV---LTVDENFRVRWRKVSTIIRHKVDKILRIKFEGGYI 707
Query: 266 ETNLKESIRKVQEK-LETEKESHNRLSEVTKNYHSILKSASDNMSVS----------IKT 412
E SI + E L +K S ++ + ++ + ++ D + + +K
Sbjct: 708 ELTGNHSIMMLDENGLVAKKASDIKVGDCFLSFVANIEGEKDRLDLKEFEPKDITSRVKI 767
Query: 413 IND 421
IND
Sbjct: 768 IND 770
>sp|P23746|ABRA_PLAFF 101 kDa malaria antigen (P101) (Acidic basic repeat antigen)
Length = 321
Score = 35.8 bits (81), Expect = 0.089
Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 6/123 (4%)
Frame = +2
Query: 5 IEGSEEDIAFLKDRRFAL-DKLVELSKGNK---AFFEESDGQEMISRNGNLDLLDKLCSA 172
IE DI +K A+ ++L+ + GNK F+++ + + + ++K A
Sbjct: 199 IEAINNDIQIIKQELQAIYNELMNYTNGNKNIQQIFQQNILENDVLNQETEEEMEKQVEA 258
Query: 173 EHKRVEYESQLIFIK--DELTKIKSIQNEAGEVETNLKESIRKVQEKLETEKESHNRLSE 346
K++E E + K +E K K + E E E KE ++ +EK E EKE E
Sbjct: 259 ITKQIEAEVDALAPKNKEEEEKEKEKEKEKEEKEKEEKEKEKEEKEKEEKEKEEKEEKEE 318
Query: 347 VTK 355
K
Sbjct: 319 EKK 321
>sp|P18011|IPAB_SHIFL Invasin ipaB (62 kDa antigen)
Length = 580
Score = 35.4 bits (80), Expect = 0.12
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Frame = +2
Query: 116 QEMISRNGNLDLLDK----LCSAEHKRVEYESQLIFIKDELTKIKSIQNEAGEVETNLKE 283
Q+ + NL+ DK L E +YE Q+ +K+ +KIK ++N+ +++T L E
Sbjct: 108 QQQARQQKNLEFSDKINTLLSETEGLTRDYEKQINKLKNADSKIKDLENKINQIQTRLSE 167
Query: 284 SIRKVQEKLETEKE 325
+ EK + +E
Sbjct: 168 LDPESPEKKKLSRE 181
>sp|P05659|MYSN_ACACA Myosin II heavy chain, non muscle
Length = 1509
Score = 35.4 bits (80), Expect = 0.12
Identities = 32/156 (20%), Positives = 69/156 (44%), Gaps = 17/156 (10%)
Frame = +2
Query: 5 IEGSEEDIAFLKDRRFALDKLVELSKGNKAFFEES-----------DGQEMISRNGNLDL 151
++ E+++A LKD LDK +L++ + E+ +G++ N L
Sbjct: 865 VKDLEKELAALKDANAKLDKEKQLAEEDADKLEKDLAALKLKILDLEGEKADLEEDNALL 924
Query: 152 LDKLCSAEHKRVEYESQLIFIKDELTKIKSIQNEAGEVETNLKE------SIRKVQEKLE 313
K+ E E + + D L + + ++ E GE++ +L+E ++++ + K+E
Sbjct: 925 QKKVAGLEE---ELQEETSASNDILEQKRKLEAEKGELKASLEEEERNRKALQEAKTKVE 981
Query: 314 TEKESHNRLSEVTKNYHSILKSASDNMSVSIKTIND 421
+E+ E H LK +++S ++ D
Sbjct: 982 SERNELQDKYEDEAAAHDSLKKKEEDLSRELRETKD 1017
>sp|Q03945|IPAB_SHIDY Invasin ipaB (62 kDa antigen)
Length = 580
Score = 34.7 bits (78), Expect = 0.20
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Frame = +2
Query: 116 QEMISRNGNLDLLDK----LCSAEHKRVEYESQLIFIKDELTKIKSIQNEAGEVETNLKE 283
Q+ + NL+ DK L E +YE Q+ +K+ +KIK ++N+ +++T L E
Sbjct: 108 QQQARQQKNLEFSDKINTLLSETEGLTRDYEKQINKLKNADSKIKDLENKINQIQTRLSE 167
Query: 284 SIRKVQEKLETEKE 325
EK + +E
Sbjct: 168 LDPDSPEKKKLSRE 181
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,282,792
Number of Sequences: 369166
Number of extensions: 795788
Number of successful extensions: 3597
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3579
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4846822695
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)