Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_A02
(193 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P51818|HSP83_ARATH Heat shock protein 81-3 (HSP81-3) (HS... 47 1e-05
sp|P55737|HSP82_ARATH Heat shock protein 81-2 (HSP81-2) 46 3e-05
sp|O02192|HSP83_DROAV Heat shock protein 83 (HSP 82) 46 3e-05
sp|P02828|HSP83_DROME Heat shock protein 83 (HSP 82) 45 4e-05
sp|P08238|HS90B_HUMAN Heat shock protein HSP 90-beta (HSP 8... 44 2e-04
sp|P36182|HSP82_TOBAC Heat shock protein 82 44 2e-04
sp|P34058|HS90B_RAT Heat shock protein HSP 90-beta (HSP 84) 43 2e-04
sp|Q9GKX8|HS90B_HORSE Heat shock protein HSP 90-beta (HSP 84) 43 2e-04
sp|Q90474|HS90A_BRARE Heat shock protein HSP 90-alpha 43 2e-04
sp|P11499|HS90B_MOUSE Heat shock protein HSP 90-beta (HSP 8... 43 2e-04
>sp|P51818|HSP83_ARATH Heat shock protein 81-3 (HSP81-3) (HSP81.2)
Length = 699
Score = 47.4 bits (111), Expect = 1e-05
Identities = 26/46 (56%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Frame = +1
Query: 1 RIHRMIKLGLGIEDDD-VEMDATEAGDVPVVASTAEEDAGKMEEVD 135
RIHRM+KLGL I+DDD VE DA D+P + A+ + KMEEVD
Sbjct: 658 RIHRMLKLGLSIDDDDVVEADA----DMPPLEDDADAEGSKMEEVD 699
>sp|P55737|HSP82_ARATH Heat shock protein 81-2 (HSP81-2)
Length = 699
Score = 45.8 bits (107), Expect = 3e-05
Identities = 25/46 (54%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Frame = +1
Query: 1 RIHRMIKLGLGIEDDD-VEMDATEAGDVPVVASTAEEDAGKMEEVD 135
RIHRM+KLGL I+DDD VE DA ++P + A+ + KMEEVD
Sbjct: 658 RIHRMLKLGLSIDDDDAVEADA----EMPPLEDDADAEGSKMEEVD 699
>sp|O02192|HSP83_DROAV Heat shock protein 83 (HSP 82)
Length = 716
Score = 45.8 bits (107), Expect = 3e-05
Identities = 26/47 (55%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Frame = +1
Query: 1 RIHRMIKLGLGIEDDD--VEMDATEAGDVPVVASTAEEDAGKMEEVD 135
RI+RMIKLGLGI++D+ DA AGD P + EDA MEEVD
Sbjct: 671 RIYRMIKLGLGIDEDEPMTTEDAQSAGDAPSLVEDT-EDASHMEEVD 716
>sp|P02828|HSP83_DROME Heat shock protein 83 (HSP 82)
Length = 717
Score = 45.4 bits (106), Expect = 4e-05
Identities = 26/47 (55%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Frame = +1
Query: 1 RIHRMIKLGLGIEDDD--VEMDATEAGDVPVVASTAEEDAGKMEEVD 135
RI+RMIKLGLGI++D+ DA AGD P + EDA MEEVD
Sbjct: 672 RIYRMIKLGLGIDEDEPMTTDDAQSAGDAPSLVEDT-EDASHMEEVD 717
>sp|P08238|HS90B_HUMAN Heat shock protein HSP 90-beta (HSP 84) (HSP 90)
Length = 724
Score = 43.5 bits (101), Expect = 2e-04
Identities = 24/48 (50%), Positives = 34/48 (70%), Gaps = 3/48 (6%)
Frame = +1
Query: 1 RIHRMIKLGLGIEDDDV---EMDATEAGDVPVVASTAEEDAGKMEEVD 135
RI+RMIKLGLGI++D+V E +A ++P + +EDA +MEEVD
Sbjct: 679 RIYRMIKLGLGIDEDEVAAEEPNAAVPDEIPPL--EGDEDASRMEEVD 724
>sp|P36182|HSP82_TOBAC Heat shock protein 82
Length = 499
Score = 43.5 bits (101), Expect = 2e-04
Identities = 23/45 (51%), Positives = 31/45 (68%)
Frame = +1
Query: 1 RIHRMIKLGLGIEDDDVEMDATEAGDVPVVASTAEEDAGKMEEVD 135
RIHRM+KLGL I++++ +A E D+P + T EE KMEEVD
Sbjct: 460 RIHRMLKLGLSIDEEE---EAVEDADMPALEETGEE--SKMEEVD 499
>sp|P34058|HS90B_RAT Heat shock protein HSP 90-beta (HSP 84)
Length = 724
Score = 43.1 bits (100), Expect = 2e-04
Identities = 24/48 (50%), Positives = 33/48 (68%), Gaps = 3/48 (6%)
Frame = +1
Query: 1 RIHRMIKLGLGIEDDDV---EMDATEAGDVPVVASTAEEDAGKMEEVD 135
RI+RMIKLGLGI++D+V E A ++P + +EDA +MEEVD
Sbjct: 679 RIYRMIKLGLGIDEDEVTAEEPSAAVPDEIPPL--EGDEDASRMEEVD 724
>sp|Q9GKX8|HS90B_HORSE Heat shock protein HSP 90-beta (HSP 84)
Length = 724
Score = 43.1 bits (100), Expect = 2e-04
Identities = 24/48 (50%), Positives = 33/48 (68%), Gaps = 3/48 (6%)
Frame = +1
Query: 1 RIHRMIKLGLGIEDDDV---EMDATEAGDVPVVASTAEEDAGKMEEVD 135
RI+RMIKLGLGI++D+V E A ++P + +EDA +MEEVD
Sbjct: 679 RIYRMIKLGLGIDEDEVAAEEPSAAVPDEIPPL--EGDEDASRMEEVD 724
>sp|Q90474|HS90A_BRARE Heat shock protein HSP 90-alpha
Length = 726
Score = 43.1 bits (100), Expect = 2e-04
Identities = 24/48 (50%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Frame = +1
Query: 1 RIHRMIKLGLGIEDDD---VEMDATEAGDVPVVASTAEEDAGKMEEVD 135
RI+RMIKLGLGI+DDD E+ D+PV+ ++D +MEEVD
Sbjct: 681 RIYRMIKLGLGIDDDDSVVEEISQPAEEDMPVL--EGDDDTSRMEEVD 726
>sp|P11499|HS90B_MOUSE Heat shock protein HSP 90-beta (HSP 84) (Tumor-specific
transplantation 84 kDa antigen) (TSTA)
Length = 724
Score = 43.1 bits (100), Expect = 2e-04
Identities = 24/48 (50%), Positives = 33/48 (68%), Gaps = 3/48 (6%)
Frame = +1
Query: 1 RIHRMIKLGLGIEDDDV---EMDATEAGDVPVVASTAEEDAGKMEEVD 135
RI+RMIKLGLGI++D+V E A ++P + +EDA +MEEVD
Sbjct: 679 RIYRMIKLGLGIDEDEVTAEEPSAAVPDEIPPL--EGDEDASRMEEVD 724
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,250,324
Number of Sequences: 369166
Number of extensions: 221235
Number of successful extensions: 875
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 68,354,980
effective HSP length: 35
effective length of database: 61,889,255
effective search space used: 1732899140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)