Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_P24
(755 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P47926|RSI1_LYCES RSI-1 protein precursor (TR132) 32 2.4
sp|Q9P4Z1|TOM1_NEUCR E3 ubiquitin protein ligase TOM1-like ... 30 7.0
>sp|P47926|RSI1_LYCES RSI-1 protein precursor (TR132)
Length = 96
Score = 31.6 bits (70), Expect = 2.4
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +2
Query: 20 CPKNTVTKLCIPRQGTVRIVHKIYRVNKKSCRCYASFRTRYKQIRCP 160
C K T LC+P+ +Y NK+SC CY +++T+ + +CP
Sbjct: 59 CQKCCATCLCVPKG--------VYG-NKQSCPCYNNWKTQEGKPKCP 96
Score = 29.6 bits (65), Expect = 9.2
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = +2
Query: 113 RCYASFRTRYKQIRCPKNTVTKLCIPRQGTVRIVHKIYRVNKKACRCYASIRTRYRQTRC 292
RC A+ + C K T LC+P+ +Y NK++C CY + +T+ + +C
Sbjct: 45 RCSATSHKKPCMFFCQKCCATCLCVPKG--------VYG-NKQSCPCYNNWKTQEGKPKC 95
>sp|Q9P4Z1|TOM1_NEUCR E3 ubiquitin protein ligase TOM1-like protein
Length = 4065
Score = 30.0 bits (66), Expect = 7.0
Identities = 17/68 (25%), Positives = 33/68 (48%)
Frame = +2
Query: 218 KIYRVNKKACRCYASIRTRYRQTRCLIRPRNIIRRAAHVYHNGIYDSITTIFYRRHNCAC 397
K+ + K S+ ++Y+QTR P + R HV+H DS +++Y++ +
Sbjct: 3679 KVLEFDNKRNYFNRSVHSKYQQTRHSFPPLQLQVRREHVFH----DSFRSLYYKKADELK 3734
Query: 398 LRRTSTRF 421
+ + RF
Sbjct: 3735 FGKLNIRF 3742
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,515,026
Number of Sequences: 369166
Number of extensions: 849185
Number of successful extensions: 2724
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2719
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6921714800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)