Planarian EST Database


Dr_sW_009_P24

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_009_P24
         (755 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P47926|RSI1_LYCES  RSI-1 protein precursor (TR132)              32   2.4  
sp|Q9P4Z1|TOM1_NEUCR  E3 ubiquitin protein ligase TOM1-like ...    30   7.0  
>sp|P47926|RSI1_LYCES RSI-1 protein precursor (TR132)
          Length = 96

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +2

Query: 20  CPKNTVTKLCIPRQGTVRIVHKIYRVNKKSCRCYASFRTRYKQIRCP 160
           C K   T LC+P+         +Y  NK+SC CY +++T+  + +CP
Sbjct: 59  CQKCCATCLCVPKG--------VYG-NKQSCPCYNNWKTQEGKPKCP 96

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +2

Query: 113 RCYASFRTRYKQIRCPKNTVTKLCIPRQGTVRIVHKIYRVNKKACRCYASIRTRYRQTRC 292
           RC A+   +     C K   T LC+P+         +Y  NK++C CY + +T+  + +C
Sbjct: 45  RCSATSHKKPCMFFCQKCCATCLCVPKG--------VYG-NKQSCPCYNNWKTQEGKPKC 95
>sp|Q9P4Z1|TOM1_NEUCR E3 ubiquitin protein ligase TOM1-like protein
          Length = 4065

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 17/68 (25%), Positives = 33/68 (48%)
 Frame = +2

Query: 218  KIYRVNKKACRCYASIRTRYRQTRCLIRPRNIIRRAAHVYHNGIYDSITTIFYRRHNCAC 397
            K+   + K      S+ ++Y+QTR    P  +  R  HV+H    DS  +++Y++ +   
Sbjct: 3679 KVLEFDNKRNYFNRSVHSKYQQTRHSFPPLQLQVRREHVFH----DSFRSLYYKKADELK 3734

Query: 398  LRRTSTRF 421
              + + RF
Sbjct: 3735 FGKLNIRF 3742
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,515,026
Number of Sequences: 369166
Number of extensions: 849185
Number of successful extensions: 2724
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2719
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6921714800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)