Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Dr_sW_009_P24 (755 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|P47926|RSI1_LYCES RSI-1 protein precursor (TR132) 32 2.4 sp|Q9P4Z1|TOM1_NEUCR E3 ubiquitin protein ligase TOM1-like ... 30 7.0
>sp|P47926|RSI1_LYCES RSI-1 protein precursor (TR132) Length = 96 Score = 31.6 bits (70), Expect = 2.4 Identities = 16/47 (34%), Positives = 26/47 (55%) Frame = +2 Query: 20 CPKNTVTKLCIPRQGTVRIVHKIYRVNKKSCRCYASFRTRYKQIRCP 160 C K T LC+P+ +Y NK+SC CY +++T+ + +CP Sbjct: 59 CQKCCATCLCVPKG--------VYG-NKQSCPCYNNWKTQEGKPKCP 96
Score = 29.6 bits (65), Expect = 9.2 Identities = 17/60 (28%), Positives = 29/60 (48%) Frame = +2 Query: 113 RCYASFRTRYKQIRCPKNTVTKLCIPRQGTVRIVHKIYRVNKKACRCYASIRTRYRQTRC 292 RC A+ + C K T LC+P+ +Y NK++C CY + +T+ + +C Sbjct: 45 RCSATSHKKPCMFFCQKCCATCLCVPKG--------VYG-NKQSCPCYNNWKTQEGKPKC 95
>sp|Q9P4Z1|TOM1_NEUCR E3 ubiquitin protein ligase TOM1-like protein Length = 4065 Score = 30.0 bits (66), Expect = 7.0 Identities = 17/68 (25%), Positives = 33/68 (48%) Frame = +2 Query: 218 KIYRVNKKACRCYASIRTRYRQTRCLIRPRNIIRRAAHVYHNGIYDSITTIFYRRHNCAC 397 K+ + K S+ ++Y+QTR P + R HV+H DS +++Y++ + Sbjct: 3679 KVLEFDNKRNYFNRSVHSKYQQTRHSFPPLQLQVRREHVFH----DSFRSLYYKKADELK 3734 Query: 398 LRRTSTRF 421 + + RF Sbjct: 3735 FGKLNIRF 3742
Database: Non-redundant SwissProt sequences Posted date: Dec 6, 2005 7:40 AM Number of letters in database: 68,354,980 Number of sequences in database: 184,735 Database: swissprot.01 Posted date: Dec 6, 2005 8:18 AM Number of letters in database: 66,202,850 Number of sequences in database: 184,431 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,515,026 Number of Sequences: 369166 Number of extensions: 849185 Number of successful extensions: 2724 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 2528 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2719 length of database: 68,354,980 effective HSP length: 108 effective length of database: 48,403,600 effective search space used: 6921714800 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)