Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_P18
(831 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6GYQ0|GRIPE_HUMAN GTPase-activating Rap/Ran-GAP domain-... 33 0.96
sp|Q86W56|PARG_HUMAN Poly(ADP-ribose) glycohydrolase 32 1.6
sp|O02776|PARG_BOVIN Poly(ADP-ribose) glycohydrolase 32 1.6
sp|P50239|E75_GALME Ecdysone-inducible protein E75 32 2.1
sp|P45861|YWJA_BACSU Hypothetical ABC transporter ATP-bindi... 32 2.1
sp|Q9QYM2|PARG_RAT Poly(ADP-ribose) glycohydrolase 32 2.1
sp|O88622|PARG_MOUSE Poly(ADP-ribose) glycohydrolase 32 2.1
sp|P12174|MATK_MARPO Maturase K (Intron maturase) 32 2.8
sp|Q895H6|LEXA_CLOTE LexA repressor 31 4.8
sp|P17672|E75BA_DROME Ecdysone-induced protein 75B isoform ... 30 6.2
>sp|Q6GYQ0|GRIPE_HUMAN GTPase-activating Rap/Ran-GAP domain-like 1 (GAP-related-interacting
partner to E12) (GRIPE) (Tuberin-like protein 1)
Length = 2036
Score = 33.1 bits (74), Expect = 0.96
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = +1
Query: 70 PRTVSFIGDVDDAPVVN--ELVAPQPLFAKESLENSAFKPIKNKKSKRQHSLSCSAASGI 243
P ++S + VD P ++ L P+PL + +S +S +P+ K++ QH L AA +
Sbjct: 1450 PMSLSDLASVDYDPFMHLESLKEPEPLHSPDSERSSKLQPVTEVKTQMQHGLISIAARTV 1509
Query: 244 L 246
+
Sbjct: 1510 I 1510
>sp|Q86W56|PARG_HUMAN Poly(ADP-ribose) glycohydrolase
Length = 976
Score = 32.3 bits (72), Expect = 1.6
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 8/69 (11%)
Frame = +1
Query: 160 LENSAFKPIKNKKSKRQHSLSCSAA--SGILPNSF------DDVELRSKDDSHKHISFSR 315
L N +PI K K HS++ S + +L N+F + +++S+ S+ I+F+R
Sbjct: 604 LPNICTQPIPLLKQKMNHSITMSQEQIASLLANAFFCTFPRRNAKMKSEYSSYPDINFNR 663
Query: 316 LPFGKNSRK 342
L G++SRK
Sbjct: 664 LFEGRSSRK 672
>sp|O02776|PARG_BOVIN Poly(ADP-ribose) glycohydrolase
Length = 977
Score = 32.3 bits (72), Expect = 1.6
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 8/69 (11%)
Frame = +1
Query: 160 LENSAFKPIKNKKSKRQHSLSCSAA--SGILPNSF------DDVELRSKDDSHKHISFSR 315
L N +PI K K HS++ S + +L N+F + +++S+ S+ I+F+R
Sbjct: 605 LPNICTQPIPLLKQKMNHSITMSQEQIASLLANAFFCTFPRRNAKMKSEYSSYPDINFNR 664
Query: 316 LPFGKNSRK 342
L G++SRK
Sbjct: 665 LFEGRSSRK 673
>sp|P50239|E75_GALME Ecdysone-inducible protein E75
Length = 711
Score = 32.0 bits (71), Expect = 2.1
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +1
Query: 88 IGDVDDAPVVNELVAPQPLFAKESLENSAFKPIKNKKSKRQHSLS 222
I DD PV+ ++ PL+ SL + A+KP K ++ R+ + S
Sbjct: 522 IAPADDMPVLKRVLQAPPLYDASSLMDEAYKPHKKFRAMRRDTWS 566
>sp|P45861|YWJA_BACSU Hypothetical ABC transporter ATP-binding protein ywjA
Length = 575
Score = 32.0 bits (71), Expect = 2.1
Identities = 16/71 (22%), Positives = 36/71 (50%), Gaps = 10/71 (14%)
Frame = +2
Query: 158 R*KILRLNQLKIKSQNGNIPYHVVQLVEYFQIVLMTW----------NYAVKMIVTNIFL 307
R ++ +L+ KI ++NG+I Y + + V F ++ TW + +++TN+
Sbjct: 225 RFRVTKLSSYKIMAKNGSISYMLTRFVTLFVLLCGTWFVIRGSLSYGEFVAFVLLTNVLF 284
Query: 308 LAVCRLVKIVE 340
+ ++ I+E
Sbjct: 285 RPIDKINAIIE 295
>sp|Q9QYM2|PARG_RAT Poly(ADP-ribose) glycohydrolase
Length = 972
Score = 32.0 bits (71), Expect = 2.1
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 8/69 (11%)
Frame = +1
Query: 160 LENSAFKPIKNKKSKRQHSLSCSAA--SGILPNSF------DDVELRSKDDSHKHISFSR 315
L N +PI K K HS++ S + +L N+F + +++S+ S+ I+F+R
Sbjct: 600 LPNICTQPIPLLKQKMNHSVTMSQEQIASLLANAFFCTFPRRNAKMKSEYSSYPDINFNR 659
Query: 316 LPFGKNSRK 342
L G++SRK
Sbjct: 660 LFEGRSSRK 668
>sp|O88622|PARG_MOUSE Poly(ADP-ribose) glycohydrolase
Length = 969
Score = 32.0 bits (71), Expect = 2.1
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 8/69 (11%)
Frame = +1
Query: 160 LENSAFKPIKNKKSKRQHSLSCSAA--SGILPNSF------DDVELRSKDDSHKHISFSR 315
L N +PI K K HS++ S + +L N+F + +++S+ S+ I+F+R
Sbjct: 597 LPNICTQPIPLLKQKMNHSVTMSQEQIASLLANAFFCTFPRRNAKMKSEYSSYPDINFNR 656
Query: 316 LPFGKNSRK 342
L G++SRK
Sbjct: 657 LFEGRSSRK 665
>sp|P12174|MATK_MARPO Maturase K (Intron maturase)
Length = 370
Score = 31.6 bits (70), Expect = 2.8
Identities = 16/57 (28%), Positives = 32/57 (56%)
Frame = +1
Query: 619 SRIPYLCIVQALQRKPAQCELTSRLLCELIGTTINDDNMAKGFDLVISEMSELTIDC 789
S IP + +++ L ++ C++ R LC+L TT++D+ + + FD +I + C
Sbjct: 225 SIIPVIPLIRLLAKEKF-CDVLGRPLCKLSWTTLSDNEIFERFDQIIKHIFSYYSGC 280
>sp|Q895H6|LEXA_CLOTE LexA repressor
Length = 200
Score = 30.8 bits (68), Expect = 4.8
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Frame = +1
Query: 64 SKPRTVSFIG------DVDDAPVVNELVAPQPLFAKESLENSAFKPIKNKKSKRQ 210
+KPR + + ++ D PVV + A +P+ A E++E++ PI ++K+Q
Sbjct: 60 TKPRAIEVLEHSIMKKEMVDIPVVGTVTAGKPILAVENIEDTFALPINYVRNKKQ 114
>sp|P17672|E75BA_DROME Ecdysone-induced protein 75B isoform A (E75-B)
Length = 1355
Score = 30.4 bits (67), Expect = 6.2
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +1
Query: 97 VDDAPVVNELVAPQPLFAKESLENSAFKPIKNKKSKRQHSLSCSAA 234
V+D PV+ ++ PL+ SL + A+KP K ++ R + A
Sbjct: 1008 VEDMPVLKRVLQAPPLYDTNSLMDEAYKPHKKFRALRHREFETAEA 1053
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,166,429
Number of Sequences: 369166
Number of extensions: 1444292
Number of successful extensions: 3586
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3586
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8052550455
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)