Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_P14
(109 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q01520|EF1A_PODAN Elongation factor 1-alpha (EF-1-alpha) 77 2e-14
sp|Q01765|EF1A_PODCU Elongation factor 1-alpha (EF-1-alpha) 77 2e-14
sp|Q01372|EF1A_NEUCR Elongation factor 1-alpha (EF-1-alpha) 77 2e-14
sp|Q71V39|EF1A2_RABIT Elongation factor 1-alpha 2 (EF-1-alp... 75 4e-14
sp|P13549|EF1A0_XENLA Elongation factor 1-alpha, somatic fo... 75 4e-14
sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alp... 75 4e-14
sp|P29520|EF1A_BOMMO Elongation factor 1-alpha (EF-1-alpha) 75 4e-14
sp|Q90835|EF1A_CHICK Elongation factor 1-alpha 1 (EF-1-alph... 75 4e-14
sp|P62631|EF1A2_MOUSE Elongation factor 1-alpha 2 (EF-1-alp... 75 4e-14
sp|P27592|EF1A_ONCVO Elongation factor 1-alpha (EF-1-alpha) 75 4e-14
>sp|Q01520|EF1A_PODAN Elongation factor 1-alpha (EF-1-alpha)
Length = 460
Score = 76.6 bits (187), Expect = 2e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +1
Query: 1 DKTHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTI 108
DKTHIN+VVIGHVDSGKST+TGHLIYKCGGIDKRTI
Sbjct: 5 DKTHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTI 40
>sp|Q01765|EF1A_PODCU Elongation factor 1-alpha (EF-1-alpha)
Length = 461
Score = 76.6 bits (187), Expect = 2e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +1
Query: 1 DKTHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTI 108
DKTHIN+VVIGHVDSGKST+TGHLIYKCGGIDKRTI
Sbjct: 5 DKTHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTI 40
>sp|Q01372|EF1A_NEUCR Elongation factor 1-alpha (EF-1-alpha)
Length = 460
Score = 76.6 bits (187), Expect = 2e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +1
Query: 1 DKTHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTI 108
DKTHIN+VVIGHVDSGKST+TGHLIYKCGGIDKRTI
Sbjct: 5 DKTHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTI 40
>sp|Q71V39|EF1A2_RABIT Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
sp|Q05639|EF1A2_HUMAN Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
Length = 463
Score = 75.5 bits (184), Expect = 4e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +1
Query: 1 DKTHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTI 108
+KTHINIVVIGHVDSGKST+TGHLIYKCGGIDKRTI
Sbjct: 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTI 39
>sp|P13549|EF1A0_XENLA Elongation factor 1-alpha, somatic form (EF-1-alpha-S)
Length = 462
Score = 75.5 bits (184), Expect = 4e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +1
Query: 1 DKTHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTI 108
+KTHINIVVIGHVDSGKST+TGHLIYKCGGIDKRTI
Sbjct: 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTI 39
>sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62630|EF1A1_RAT Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62629|EF1A1_CRIGR Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 75.5 bits (184), Expect = 4e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +1
Query: 1 DKTHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTI 108
+KTHINIVVIGHVDSGKST+TGHLIYKCGGIDKRTI
Sbjct: 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTI 39
>sp|P29520|EF1A_BOMMO Elongation factor 1-alpha (EF-1-alpha)
Length = 463
Score = 75.5 bits (184), Expect = 4e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +1
Query: 1 DKTHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTI 108
+KTHINIVVIGHVDSGKST+TGHLIYKCGGIDKRTI
Sbjct: 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTI 39
>sp|Q90835|EF1A_CHICK Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor Tu)
(EF-Tu)
Length = 462
Score = 75.5 bits (184), Expect = 4e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +1
Query: 1 DKTHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTI 108
+KTHINIVVIGHVDSGKST+TGHLIYKCGGIDKRTI
Sbjct: 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTI 39
>sp|P62631|EF1A2_MOUSE Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
sp|P62632|EF1A2_RAT Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
Length = 463
Score = 75.5 bits (184), Expect = 4e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +1
Query: 1 DKTHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTI 108
+KTHINIVVIGHVDSGKST+TGHLIYKCGGIDKRTI
Sbjct: 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTI 39
>sp|P27592|EF1A_ONCVO Elongation factor 1-alpha (EF-1-alpha)
Length = 464
Score = 75.5 bits (184), Expect = 4e-14
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +1
Query: 1 DKTHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTI 108
+KTHINIVVIGHVDSGKST+TGHLIYKCGGIDKRTI
Sbjct: 4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTI 39
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,888,706
Number of Sequences: 369166
Number of extensions: 118513
Number of successful extensions: 1411
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1411
length of database: 68,354,980
effective HSP length: 9
effective length of database: 66,692,365
effective search space used: 1734001490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)