Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_N22
(844 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q96EY1|DNJA3_HUMAN DnaJ homolog subfamily A member 3, mi... 200 5e-51
sp|Q99M87|DNJA3_MOUSE DnaJ homolog subfamily A member 3, mi... 199 1e-50
sp|Q24331|TID_DROVI Tumorous imaginal discs protein, mitoch... 191 2e-48
sp|Q27237|TID_DROME Tumorous imaginal discs protein, mitoch... 181 2e-45
sp|Q8TA83|DNJ10_CAEEL DnaJ homolog dnj-10 (DnaJ domain prot... 147 3e-35
sp|O69269|DNAJ_BACSH Chaperone protein dnaJ 143 5e-34
sp|Q5KWZ8|DNAJ_GEOKA Chaperone protein dnaJ 135 1e-31
sp|P63969|DNAJ_NEIMB Chaperone protein dnaJ >gi|54040948|sp... 134 2e-31
sp|Q5F5M1|DNAJ_NEIG1 Chaperone protein dnaJ 133 5e-31
sp|Q8XIT1|DNAJ_CLOPE Chaperone protein dnaJ 132 2e-30
>sp|Q96EY1|DNJA3_HUMAN DnaJ homolog subfamily A member 3, mitochondrial precursor
(Tumorous imaginal discs protein Tid56 homolog) (DnaJ
protein Tid-1) (hTid-1)
Length = 480
Score = 200 bits (508), Expect = 5e-51
Identities = 94/211 (44%), Positives = 144/211 (68%), Gaps = 1/211 (0%)
Frame = +3
Query: 3 GTSSTVCPSCQGSGVQSVNTGPFLMXXXXXXXXXXXXIIKNPCHDCKGKGRVSQRKKIRV 182
GT C C GSG++++NTGPF+M II +PC C+G G+ Q+K++ +
Sbjct: 247 GTKVQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSIIISPCVVCRGAGQAKQKKRVMI 306
Query: 183 SIPAGIEDGQSLRVSLGARSAQELYVTVRVEKSNLFRRDGSDVHSDITVSLPLAALGGKI 362
+PAG+EDGQ++R+ +G R E+++T RV+KS +FRRDG+D+HSD+ +S+ A LGG
Sbjct: 307 PVPAGVEDGQTVRMPVGKR---EIFITFRVQKSPVFRRDGADIHSDLFISIAQALLGGTA 363
Query: 363 TVPGIYGDVTVDIPKGSCSHDRIRLPGKGIARVNSYGYGDHYLNIKIQPTKRLTETQRAL 542
G+Y + V IP G+ + +IR+ GKGI R+NSYGYGDHY++IKI+ KRLT Q++L
Sbjct: 364 RAQGLYETINVTIPPGTQTDQKIRMGGKGIPRINSYGYGDHYIHIKIRVPKRLTSRQQSL 423
Query: 543 LLALAEQD-ESAGMINGVTMTANGKQAIDDT 632
+L+ AE + + G +NGVT+T++G +D +
Sbjct: 424 ILSYAEDETDVEGTVNGVTLTSSGGSTMDSS 454
>sp|Q99M87|DNJA3_MOUSE DnaJ homolog subfamily A member 3, mitochondrial precursor
(Tumorous imaginal discs protein Tid56 homolog) (DnaJ
protein Tid-1) (mTid-1)
Length = 480
Score = 199 bits (505), Expect = 1e-50
Identities = 96/211 (45%), Positives = 141/211 (66%), Gaps = 1/211 (0%)
Frame = +3
Query: 3 GTSSTVCPSCQGSGVQSVNTGPFLMXXXXXXXXXXXXIIKNPCHDCKGKGRVSQRKKIRV 182
GT C C GSG++++NTGPF+M II NPC C+G G+ Q+K++ +
Sbjct: 247 GTKVQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSIITNPCVVCRGAGQAKQKKRVTI 306
Query: 183 SIPAGIEDGQSLRVSLGARSAQELYVTVRVEKSNLFRRDGSDVHSDITVSLPLAALGGKI 362
+PAG+EDGQ++R+ +G R E++VT RV+KS +FRRDG+D+HSD+ +S+ A LGG
Sbjct: 307 PVPAGVEDGQTVRMPVGKR---EIFVTFRVQKSPVFRRDGADIHSDLFISIAQAILGGTA 363
Query: 363 TVPGIYGDVTVDIPKGSCSHDRIRLPGKGIARVNSYGYGDHYLNIKIQPTKRLTETQRAL 542
G+Y + V IP G + +IRL GKGI R+NSYGYGDHY++IKI+ KRL+ Q+ L
Sbjct: 364 KAQGLYETINVTIPAGIQTDQKIRLTGKGIPRINSYGYGDHYIHIKIRVPKRLSSRQQNL 423
Query: 543 LLALAEQD-ESAGMINGVTMTANGKQAIDDT 632
+L+ AE + + G +NGVT T+ G + +D +
Sbjct: 424 ILSYAEDETDVEGTVNGVTHTSTGGRTMDSS 454
>sp|Q24331|TID_DROVI Tumorous imaginal discs protein, mitochondrial precursor
(Lethal(2)tumorous imaginal discs protein) (TID58)
Length = 529
Score = 191 bits (486), Expect = 2e-48
Identities = 93/206 (45%), Positives = 142/206 (68%), Gaps = 1/206 (0%)
Frame = +3
Query: 3 GTSSTVCPSCQGSGVQSVNTGPFLMXXXXXXXXXXXXIIKNPCHDCKGKGRVSQRKKIRV 182
GT C C G+G ++++TGPF+M IK PC +C+GKG+ QR+K+ V
Sbjct: 254 GTKPGRCQYCNGTGFETISTGPFVMRSTCRYCQGTRQYIKYPCAECEGKGQTVQRRKVTV 313
Query: 183 SIPAGIEDGQSLRVSLGARSAQELYVTVRVEKSNLFRRDGSDVHSDITVSLPLAALGGKI 362
+PAGIE+GQ++R+ +G++ EL+VT RVE+S+ FRRDG+DVH+D +SL A LGG +
Sbjct: 314 PVPAGIENGQTVRMQVGSK---ELFVTFRVERSDYFRRDGADVHTDAPISLAQAVLGGTV 370
Query: 363 TVPGIYGDVTVDIPKGSCSHDRIRLPGKGIARVNSYGYGDHYLNIKIQPTKRLTETQRAL 542
V G+Y D ++I G+ SH +I L GKG+ RVN++G+GDHY++IKI+ K+L++ QRAL
Sbjct: 371 RVQGVYEDQWLNIEPGTSSHRKIALRGKGLKRVNAHGHGDHYVHIKIEVPKKLSQEQRAL 430
Query: 543 LLALAE-QDESAGMINGVTMTANGKQ 617
L A AE ++++ G I+G+ +G +
Sbjct: 431 LEAYAELEEDTPGQIHGMAQRKDGSK 456
>sp|Q27237|TID_DROME Tumorous imaginal discs protein, mitochondrial precursor
(Lethal(2)tumorous imaginal discs protein) (TID56)
(TID50)
Length = 520
Score = 181 bits (459), Expect = 2e-45
Identities = 92/210 (43%), Positives = 141/210 (67%), Gaps = 4/210 (1%)
Frame = +3
Query: 3 GTSSTVCPSCQGSGVQSVNTGPFLMXXXXXXXXXXXXIIKNPCHDCKGKGRVSQRKKIRV 182
GT C C G+G ++V+TGPF+M IK PC +C+GKGR QR+K+ V
Sbjct: 238 GTKPGRCQYCNGTGFETVSTGPFVMRSTCRYCQGTRQHIKYPCSECEGKGRTVQRRKVTV 297
Query: 183 SIPAGIEDGQSLRVSLGARSAQELYVTVRVEKSNLFRRDGSDVHSDITVSLPLAALGGKI 362
+PAGIE+GQ++R+ +G++ EL+VT RVE+S+ FRR+G+DVH+D +SL A LGG +
Sbjct: 298 PVPAGIENGQTVRMQVGSK---ELFVTFRVERSDYFRREGADVHTDAAISLAQAVLGGTV 354
Query: 363 TVPGIYGDVTVDIPKGSCSHDRIRLPGKGIARVNSYGYGDHYLNIKI--QPTKRLTETQR 536
V G+Y D +++ G+ SH +I L GKG+ RVN++G+GDHY+++KI K+L + +
Sbjct: 355 RVQGVYEDQWINVEPGTSSHHKIMLRGKGLKRVNAHGHGDHYVHVKITVPSAKKLDKKRL 414
Query: 537 ALLLALAE-QDESAGMINGVTMTANG-KQA 620
AL+ A AE ++++ G I+G+ +G KQA
Sbjct: 415 ALIEAYAELEEDTPGQIHGIANRKDGSKQA 444
>sp|Q8TA83|DNJ10_CAEEL DnaJ homolog dnj-10 (DnaJ domain protein 10)
Length = 456
Score = 147 bits (372), Expect = 3e-35
Identities = 86/254 (33%), Positives = 132/254 (51%), Gaps = 3/254 (1%)
Frame = +3
Query: 3 GTSSTVCPSCQGSGVQSVNT-GPFLMXXXXXXXXXXXXIIKNPCHDCKGKGRVSQRKKIR 179
G T CP C G+G S G F KNPC +C+G+G+ QR+++
Sbjct: 202 GHKKTSCPYCNGTGAVSQRLQGGFFYQTTCNRCRGSGHYNKNPCQECEGEGQTVQRRQVS 261
Query: 180 VSIPAGIEDGQSLRVSLGARSAQELYVTVRVEKSNLFRRDGSDVHSDITVSLPLAALGGK 359
++PAG +G SL+ +G +L+V V S FRR+ D+H D+ +SL A LGG
Sbjct: 262 FNVPAGTNNGDSLKFQVGKN---QLFVRFNVAPSLKFRREKDDIHCDVDISLAQAVLGGT 318
Query: 360 ITVPGIYGDVTVDIPKGSCSHDRIRLPGKGIARVNSYGYGDHYLNIKIQPTKRLTETQRA 539
+ VPGI GD V IP G+ SH ++RL GKG+ R++SYG GD Y++IK+ K LT Q+
Sbjct: 319 VKVPGINGDTYVHIPAGTGSHTKMRLTGKGVKRLHSYGNGDQYMHIKVTVPKYLTAEQKQ 378
Query: 540 LLLALAEQDE-SAGMINGVTMTANGKQAIDDTDQFLLSQ-IRMVLKQHENTDANQPTNKQ 713
++LA A ++ G I G+ ++ ++ S+ K+ A
Sbjct: 379 IMLAWAATEQLKDGTIKGLEKNQKTEEKETKKNEEKKSEGASESQKRRSEPVAENAETID 438
Query: 714 DQQQHENPSEKLKK 755
+ Q++E EK+K+
Sbjct: 439 ENQENEGFFEKIKR 452
>sp|O69269|DNAJ_BACSH Chaperone protein dnaJ
Length = 368
Score = 143 bits (361), Expect = 5e-34
Identities = 77/196 (39%), Positives = 115/196 (58%), Gaps = 10/196 (5%)
Frame = +3
Query: 3 GTSSTVCPSCQGSGV--QSVNT--GPFLMXXXXXXXXXXXXIIKNPCHDCKGKGRVSQRK 170
GT C +C G+G Q+V+T G + IIK C C+G+G+V +RK
Sbjct: 149 GTQPETCSTCNGAGQINQAVDTPFGRMMNRRSCTTCHGTGKIIKEKCSTCRGEGKVQKRK 208
Query: 171 KIRVSIPAGIEDGQSLRVS------LGARSAQELYVTVRVEKSNLFRRDGSDVHSDITVS 332
KI+VSIPAG++DGQ +RVS + A +LY+ RV+ N F RDG D++ ++ ++
Sbjct: 209 KIKVSIPAGVDDGQQIRVSGQGEPGINGGPAGDLYIMFRVQGHNDFERDGDDIYFELKLT 268
Query: 333 LPLAALGGKITVPGIYGDVTVDIPKGSCSHDRIRLPGKGIARVNSYGYGDHYLNIKIQPT 512
P AALG +I VP ++G V + IP G+ S + RL KG+ V+ YG G+ Y+ +K+
Sbjct: 269 FPQAALGDEIEVPTVHGKVKLRIPAGTQSGAQFRLKDKGVKNVHGYGMGNQYVTVKVMTP 328
Query: 513 KRLTETQRALLLALAE 560
++LTE Q+ LL AE
Sbjct: 329 EKLTEKQKQLLREFAE 344
>sp|Q5KWZ8|DNAJ_GEOKA Chaperone protein dnaJ
Length = 382
Score = 135 bits (340), Expect = 1e-31
Identities = 76/191 (39%), Positives = 104/191 (54%), Gaps = 10/191 (5%)
Frame = +3
Query: 3 GTSSTVCPSCQGSG-VQSVNTGPF---LMXXXXXXXXXXXXIIKNPCHDCKGKGRVSQRK 170
GTS T CP C GSG V S PF + I C C G GRV +RK
Sbjct: 161 GTSPTSCPHCHGSGQVTSEQATPFGRIVNRRTCPVCGGTGRYIPEKCPTCGGTGRVKRRK 220
Query: 171 KIRVSIPAGIEDGQSLRVS------LGARSAQELYVTVRVEKSNLFRRDGSDVHSDITVS 332
KI V IPAG++DGQ LRV+ + +LY+ RVE F+RDG D++ ++ +S
Sbjct: 221 KIHVKIPAGVDDGQQLRVAGQGEPGVNGGPPGDLYIIFRVEPHEFFKRDGDDIYCEVPLS 280
Query: 333 LPLAALGGKITVPGIYGDVTVDIPKGSCSHDRIRLPGKGIARVNSYGYGDHYLNIKIQPT 512
AALG +I VP ++G V + IP G+ + R RL GKG+ V YG GD ++ +++
Sbjct: 281 FAQAALGDEIEVPTLHGHVKLKIPAGTQTGTRFRLKGKGVPNVRGYGQGDQHVIVRVVTP 340
Query: 513 KRLTETQRALL 545
+LTE Q+ LL
Sbjct: 341 TKLTEKQKQLL 351
>sp|P63969|DNAJ_NEIMB Chaperone protein dnaJ
sp|P63968|DNAJ_NEIMA Chaperone protein dnaJ
Length = 373
Score = 134 bits (338), Expect = 2e-31
Identities = 71/187 (37%), Positives = 105/187 (56%), Gaps = 6/187 (3%)
Frame = +3
Query: 3 GTSSTVCPSCQGSGVQSVNTGPFLMXXXXXXXXXXXXIIKNPCHDCKGKGRVSQRKKIRV 182
GTS CP+C+GSG + F M IK PC C+G GR K + V
Sbjct: 158 GTSPETCPTCKGSGTVHIQQAIFRMQQTCPTCHGAGKHIKEPCVKCRGAGRNKAVKTVEV 217
Query: 183 SIPAGIEDGQSLRVS------LGARSAQELYVTVRVEKSNLFRRDGSDVHSDITVSLPLA 344
+IPAGI+DGQ +R+S + A +LYVTVR+ +F+RDG D+H ++ +S A
Sbjct: 218 NIPAGIDDGQRIRLSGEGGPGMHGAPAGDLYVTVRIRAHKIFQRDGLDLHCELPISFATA 277
Query: 345 ALGGKITVPGIYGDVTVDIPKGSCSHDRIRLPGKGIARVNSYGYGDHYLNIKIQPTKRLT 524
ALGG++ VP + G V + +PK + + R+R+ GKG+ + S GD Y +I ++ LT
Sbjct: 278 ALGGELEVPTLDGKVKLTVPKETQTGRRMRVKGKGVKSLRSSATGDLYCHIVVETPVNLT 337
Query: 525 ETQRALL 545
+ Q+ LL
Sbjct: 338 DRQKELL 344
>sp|Q5F5M1|DNAJ_NEIG1 Chaperone protein dnaJ
Length = 373
Score = 133 bits (335), Expect = 5e-31
Identities = 70/187 (37%), Positives = 105/187 (56%), Gaps = 6/187 (3%)
Frame = +3
Query: 3 GTSSTVCPSCQGSGVQSVNTGPFLMXXXXXXXXXXXXIIKNPCHDCKGKGRVSQRKKIRV 182
G S CP+C+GSG + F M IK PC C+G GR K + V
Sbjct: 158 GASPETCPTCKGSGTVHIQQAIFRMQQTCPTCRGAGKHIKEPCVKCRGVGRNKAVKTVEV 217
Query: 183 SIPAGIEDGQSLRVS------LGARSAQELYVTVRVEKSNLFRRDGSDVHSDITVSLPLA 344
+IPAGI+DGQ +R+S + A +LYVTVR+ +F+RDG D+H ++ +S +A
Sbjct: 218 NIPAGIDDGQRIRLSGEGGPGMHGAPAGDLYVTVRIRAHKIFQRDGLDLHCELPISFAMA 277
Query: 345 ALGGKITVPGIYGDVTVDIPKGSCSHDRIRLPGKGIARVNSYGYGDHYLNIKIQPTKRLT 524
ALGG++ VP + G V + +PK + + R+R+ GKG+ + S GD Y +I ++ LT
Sbjct: 278 ALGGELEVPTLDGKVKLTVPKETQTGRRMRVKGKGVKSLRSSATGDLYCHIVVETPVNLT 337
Query: 525 ETQRALL 545
+ Q+ LL
Sbjct: 338 DRQKELL 344
>sp|Q8XIT1|DNAJ_CLOPE Chaperone protein dnaJ
Length = 387
Score = 132 bits (331), Expect = 2e-30
Identities = 79/222 (35%), Positives = 117/222 (52%), Gaps = 10/222 (4%)
Frame = +3
Query: 3 GTSSTVCPSCQGSGVQSVNT----GPFLMXXXXXXXXXXXXIIKNPCHDCKGKGRVSQRK 170
GTS CP C GSG V G F+ +I++PC DCKGKG V + +
Sbjct: 168 GTSPKTCPKCNGSGQIRVQRQTPLGSFVSTTTCDQCGGTGKVIEDPCPDCKGKGTVRKNR 227
Query: 171 KIRVSIPAGIEDGQSLRV----SLGARS--AQELYVTVRVEKSNLFRRDGSDVHSDITVS 332
KI V IPAG++ G + + GA + A +LY+ V V S +FRR+GSD++ D +S
Sbjct: 228 KITVKIPAGVDTGNIIPLRGQGEQGANNGPAGDLYIRVNVAPSKIFRREGSDIYYDYKIS 287
Query: 333 LPLAALGGKITVPGIYGDVTVDIPKGSCSHDRIRLPGKGIARVNSYGYGDHYLNIKIQPT 512
+ AALG +ITVP + G+V +P G+ + RL GKG+ VN G G+ Y+++ ++
Sbjct: 288 MAKAALGAEITVPTVDGNVKYKVPAGTQPGTKFRLKGKGVPHVNGGGRGNQYVHMVVEVP 347
Query: 513 KRLTETQRALLLALAEQDESAGMINGVTMTANGKQAIDDTDQ 638
K L + Q L A M A+G +++DD D+
Sbjct: 348 KHLNKEQEEALKAF--------------MKASG-ESVDDIDE 374
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,909,894
Number of Sequences: 369166
Number of extensions: 1904423
Number of successful extensions: 6275
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5534
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8245425915
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)