Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_N13
(833 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Z2G9|TIP30_MOUSE Oxidoreductase HTATIP2 163 6e-40
sp|Q9BUP3|TIP30_HUMAN Oxidoreductase HTATIP2 (HIV-1 TAT-int... 160 4e-39
sp|P45469|YRAR_ECOLI Hypothetical protein yraR 84 5e-16
sp|P40008|YEJ4_YEAST Hypothetical 25.1 kDa protein in PMI40... 69 2e-11
sp|Q04304|YMY0_YEAST Hypothetical 24.9 kDa protein in RCA1-... 37 0.088
sp|O61898|SRE12_CAEEL Serpentine receptor class epsilon-12 ... 32 2.8
sp|P32582|CBS_YEAST Cystathionine beta-synthase (Serine sul... 30 6.3
sp|Q9BMX3|ERF1_OXYTR Eukaryotic peptide chain release facto... 30 8.2
>sp|Q9Z2G9|TIP30_MOUSE Oxidoreductase HTATIP2
Length = 242
Score = 163 bits (412), Expect = 6e-40
Identities = 96/227 (42%), Positives = 139/227 (61%), Gaps = 1/227 (0%)
Frame = +2
Query: 44 VFIVGHTGETGKSLLNLLVNDSRFKEIVLFGRRIIELKFGENDKKCV-QKVVDFDKLDDC 220
VFI+G +GETGK LL ++ + F ++ L GRR +L F E K V Q+VVDF+KLD
Sbjct: 21 VFILGASGETGKVLLKEILGQNLFSKVTLIGRR--KLTFEEEAYKNVNQEVVDFEKLDVY 78
Query: 221 ADLFADNFDGGLCCLGTTRAKSGKDGFIKVDHDYILKVAELAKLGDCKQFHLVSSAGANS 400
A F + D G CCLGTTR+K+G +GF++VD DY+LK AELAK G CK F+L+SS GA+
Sbjct: 79 ASAFQGH-DVGFCCLGTTRSKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSRGADK 137
Query: 401 KSYFLYQQVKGQVEEEISNLKYSALSIYRPKILMGHREEFRFGEIFFKSLVKPIACINPT 580
S FLY QVKG+VE ++ LK+ LS++RP +L+ R+E R GE + + +
Sbjct: 138 SSSFLYLQVKGEVEAKVEELKFDRLSVFRPGVLLCDRQESRPGEWLARKFFGSLPDSWAS 197
Query: 581 LVTTPFEMLSKAMVSSFIKNYIELNSSGDLCTSKIIDNNEIFKLASE 721
P + +AM++S + SSG + ++++N I L +
Sbjct: 198 GYAVPVVTVVRAMLNSLVS-----PSSGQM---ELLENKAILHLGKD 236
>sp|Q9BUP3|TIP30_HUMAN Oxidoreductase HTATIP2 (HIV-1 TAT-interactive protein 2) (30 kDa
HIV-1 TAT-interacting protein)
Length = 242
Score = 160 bits (405), Expect = 4e-39
Identities = 85/164 (51%), Positives = 113/164 (68%), Gaps = 1/164 (0%)
Frame = +2
Query: 44 VFIVGHTGETGKSLLNLLVNDSRFKEIVLFGRRIIELKFGENDKKCV-QKVVDFDKLDDC 220
VFI+G +GETG+ LL ++ F ++ L GRR +L F E K V Q+VVDF+KLDD
Sbjct: 21 VFILGASGETGRVLLKEILEQGLFSKVTLIGRR--KLTFDEEAYKNVNQEVVDFEKLDDY 78
Query: 221 ADLFADNFDGGLCCLGTTRAKSGKDGFIKVDHDYILKVAELAKLGDCKQFHLVSSAGANS 400
A F + D G CCLGTTR K+G +GF++VD DY+LK AELAK G CK F+L+SS GA+
Sbjct: 79 ASAFQGH-DVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADK 137
Query: 401 KSYFLYQQVKGQVEEEISNLKYSALSIYRPKILMGHREEFRFGE 532
S FLY QVKG+VE ++ LK+ S++RP +L+ R+E R GE
Sbjct: 138 SSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPGE 181
>sp|P45469|YRAR_ECOLI Hypothetical protein yraR
Length = 211
Score = 84.0 bits (206), Expect = 5e-16
Identities = 57/173 (32%), Positives = 85/173 (49%), Gaps = 1/173 (0%)
Frame = +2
Query: 41 KVFIVGHTGETGKSLLNLLVNDSRFKEIVLFGRRIIELKFGENDKKCVQKVVDFDKLDDC 220
+V I G TG G LL +L+N+ + I RR + D V D +L D
Sbjct: 3 QVLITGATGLVGGHLLRMLINEPKVNAIAAPTRRPL------GDMPGVFNPHD-PQLSDA 55
Query: 221 ADLFADNFDGGLCCLGTTRAKSG-KDGFIKVDHDYILKVAELAKLGDCKQFHLVSSAGAN 397
D D CCLGTTR ++G K+ FI D+ ++ A + + +VS+ GAN
Sbjct: 56 LAQVTDPIDIVFCCLGTTRREAGSKEAFIHADYTLVVDTALTGRRLGAQHMLVVSAMGAN 115
Query: 398 SKSYFLYQQVKGQVEEEISNLKYSALSIYRPKILMGHREEFRFGEIFFKSLVK 556
+ S F Y +VKG++EE + + L+I RP +L+G R + R E F L +
Sbjct: 116 AHSPFFYNRVKGEMEEALIAQNWPKLTIARPSMLLGDRSKQRMNETLFAPLFR 168
>sp|P40008|YEJ4_YEAST Hypothetical 25.1 kDa protein in PMI40-YND1 intergenic region
Length = 231
Score = 68.9 bits (167), Expect = 2e-11
Identities = 53/157 (33%), Positives = 80/157 (50%), Gaps = 3/157 (1%)
Frame = +2
Query: 50 IVGHTGETGKSLLNLLVNDSRFKEIVLFGRRIIELKFGENDKKCVQKVVDFDKLDDCADL 229
++G TG G L +F ++ RR EL F DK V +V+ D + L
Sbjct: 5 VLGATGLCGGGFLRHAQEAPQFSKVYAILRR--ELPFPATDK--VVAIVERDN-SKWSQL 59
Query: 230 FADNFDGGLC--CLGTTRAKSGK-DGFIKVDHDYILKVAELAKLGDCKQFHLVSSAGANS 400
+ + + L TTRA +G D K+DHD L++A+ AK C+ LVSSAGA+
Sbjct: 60 ITNEMNPQVLFTALATTRAAAGGLDKQYKIDHDLNLQLAQAAKEKGCETIVLVSSAGAHP 119
Query: 401 KSYFLYQQVKGQVEEEISNLKYSALSIYRPKILMGHR 511
S F Y ++KG++E ++ L + + I RP L+G R
Sbjct: 120 DSRFGYMKMKGEIERDVIALDFKHIIILRPGPLLGER 156
>sp|Q04304|YMY0_YEAST Hypothetical 24.9 kDa protein in RCA1-NPL6 intergenic region
Length = 227
Score = 36.6 bits (83), Expect = 0.088
Identities = 36/156 (23%), Positives = 66/156 (42%), Gaps = 11/156 (7%)
Frame = +2
Query: 41 KVFIVGHTGETGKSLLNLLVNDSRFKEIVLFGRRIIELKFGENDKKCVQKVVDFD--KLD 214
KV +VG +G+ G+ L+N L + F + R ++ + +N+ + D + +
Sbjct: 5 KVAVVGASGKVGRLLINQLKANDSFSTPLAIVRTQDQVNYFKNEVGVDASLTDIENASVS 64
Query: 215 DCADLFADNFDGGLCCLGTTRAKSGKDGFIKVDHDYILKVAELAKLGDCKQFHLVSSAGA 394
+ D +D + G G + VD D +KV E + K+F +VS+ A
Sbjct: 65 EITDAI-KAYDAVVFSAGA--GGKGMERIFTVDLDGCIKVVEACEKAGIKRFVVVSALKA 121
Query: 395 NSKSYFL-------YQQVKGQVEEEI--SNLKYSAL 475
+ ++ Y K + E+ SNL Y+ L
Sbjct: 122 EDRDFWYNIKGLREYYIAKRSADREVRNSNLDYTIL 157
>sp|O61898|SRE12_CAEEL Serpentine receptor class epsilon-12 (Protein sre-12)
Length = 341
Score = 31.6 bits (70), Expect = 2.8
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +2
Query: 470 ALSIYRPKILMGHREEFRFGE--IFFKSLVKPIACINPTLVTTPFEMLSKAMVSSFIKNY 643
A+ + R L+G ++F G +F ++ + CI + + PF +L + + ++K+Y
Sbjct: 74 AIIVMRLHSLLGFTDDFDIGSNVVFNGAMTFSVYCIVAAMCSLPFSILERCFATRYLKDY 133
Query: 644 IELNS 658
E NS
Sbjct: 134 -EANS 137
>sp|P32582|CBS_YEAST Cystathionine beta-synthase (Serine sulfhydrase) (Beta-thionase)
Length = 507
Score = 30.4 bits (67), Expect = 6.3
Identities = 28/103 (27%), Positives = 41/103 (39%), Gaps = 2/103 (1%)
Frame = +2
Query: 68 ETGKSLLNLLVNDSRFKEIVLFGR--RIIELKFGENDKKCVQKVVDFDKLDDCADLFADN 241
+ G L +L D + +V R + + ND K +DF KL++ D+ + N
Sbjct: 395 DNGFDQLPVLTEDGKLSGLVTLSELLRKLSINNSNNDNTIKGKYLDFKKLNNFNDVSSYN 454
Query: 242 FDGGLCCLGTTRAKSGKDGFIKVDHDYILKVAELAKLGDCKQF 370
KSGK FIK D E +KL D +F
Sbjct: 455 -----------ENKSGKKKFIKFD--------ENSKLSDLNRF 478
>sp|Q9BMX3|ERF1_OXYTR Eukaryotic peptide chain release factor subunit 1 (eRF1)
(Eukaryotic release factor 1)
Length = 445
Score = 30.0 bits (66), Expect = 8.2
Identities = 24/88 (27%), Positives = 40/88 (45%)
Frame = +2
Query: 83 LLNLLVNDSRFKEIVLFGRRIIELKFGENDKKCVQKVVDFDKLDDCADLFADNFDGGLCC 262
LL+LL +D +F I++ G + N ++ +QK+ +L + GG
Sbjct: 141 LLSLLADDDKFGFIIVDGNGALYATLQGNSREILQKIT--------VELPKKHRKGGQSS 192
Query: 263 LGTTRAKSGKDGFIKVDHDYILKVAELA 346
+ R + K H+Y+ KVAELA
Sbjct: 193 VRFARLREEKR------HNYLRKVAELA 214
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,015,785
Number of Sequences: 369166
Number of extensions: 1568767
Number of successful extensions: 3702
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3695
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8100769320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)