Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_N06
(170 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P27446|FYN_XIPHE Proto-oncogene tyrosine-protein kinase ... 30 1.3
sp|Q05876|FYN_CHICK Proto-oncogene tyrosine-protein kinase ... 30 1.7
sp|P39688|FYN_MOUSE Proto-oncogene tyrosine-protein kinase ... 30 1.7
sp|P06241|FYN_HUMAN Proto-oncogene tyrosine-protein kinase ... 29 3.8
sp|P13406|FYN_XENLA Proto-oncogene tyrosine-protein kinase ... 29 3.8
>sp|P27446|FYN_XIPHE Proto-oncogene tyrosine-protein kinase FYN (P59-FYN)
Length = 537
Score = 30.4 bits (67), Expect = 1.3
Identities = 19/47 (40%), Positives = 26/47 (55%)
Frame = +2
Query: 20 DKEGDHVKYVKFKAALDPGQMYWCKTCILIFEKPWSLFQHMADKAKG 160
D++GDHVK+ K + LD G Y T F+ L QH +D+A G
Sbjct: 194 DEKGDHVKHYKIR-KLDSGGYY--ITTRAQFDTLQQLVQHYSDRAAG 237
>sp|Q05876|FYN_CHICK Proto-oncogene tyrosine-protein kinase Fyn (p59-Fyn)
Length = 534
Score = 30.0 bits (66), Expect = 1.7
Identities = 20/47 (42%), Positives = 25/47 (53%)
Frame = +2
Query: 20 DKEGDHVKYVKFKAALDPGQMYWCKTCILIFEKPWSLFQHMADKAKG 160
D +GDHVK+ K + LD G Y T FE L QH ++KA G
Sbjct: 194 DMKGDHVKHYKIR-KLDNGGYY--ITTRAQFETLQQLVQHYSEKADG 237
>sp|P39688|FYN_MOUSE Proto-oncogene tyrosine-protein kinase Fyn (p59-Fyn)
Length = 534
Score = 30.0 bits (66), Expect = 1.7
Identities = 20/47 (42%), Positives = 25/47 (53%)
Frame = +2
Query: 20 DKEGDHVKYVKFKAALDPGQMYWCKTCILIFEKPWSLFQHMADKAKG 160
D +GDHVK+ K + LD G Y T FE L QH ++KA G
Sbjct: 194 DMKGDHVKHYKIR-KLDNGGYY--ITTRAQFETLQQLVQHYSEKADG 237
>sp|P06241|FYN_HUMAN Proto-oncogene tyrosine-protein kinase Fyn (p59-Fyn) (Protooncogene
Syn) (SLK)
Length = 537
Score = 28.9 bits (63), Expect = 3.8
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = +2
Query: 20 DKEGDHVKYVKFKAALDPGQMYWCKTCILIFEKPWSLFQHMADKAKG 160
D +GDHVK+ K + LD G Y T FE L QH +++A G
Sbjct: 194 DMKGDHVKHYKIR-KLDNGGYY--ITTRAQFETLQQLVQHYSERAAG 237
>sp|P13406|FYN_XENLA Proto-oncogene tyrosine-protein kinase FYN (P59-FYN)
Length = 537
Score = 28.9 bits (63), Expect = 3.8
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = +2
Query: 20 DKEGDHVKYVKFKAALDPGQMYWCKTCILIFEKPWSLFQHMADKAKG 160
D +GDHVK+ K + LD G Y T FE L QH +++A G
Sbjct: 194 DMKGDHVKHYKIR-KLDNGGYY--ITTRAQFETLQQLVQHYSERAAG 237
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,478,280
Number of Sequences: 369166
Number of extensions: 298905
Number of successful extensions: 814
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 68,354,980
effective HSP length: 29
effective length of database: 62,997,665
effective search space used: 1700936955
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)