Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_N03
(372 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q60HC7|TKT_MACFA Transketolase (TK) 111 6e-25
sp|P29401|TKT_HUMAN Transketolase (TK) 110 8e-25
sp|Q5R1W6|TKT_PANTR Transketolase (TK) 110 8e-25
sp|P50137|TKT_RAT Transketolase (TK) 110 1e-24
sp|Q6B855|TKT_BOVIN Transketolase (TK) 109 2e-24
sp|P40142|TKT_MOUSE Transketolase (TK) (P68) 107 7e-24
sp|P51854|TKT2_HUMAN Transketolase-like 1 (Transketolase 2)... 97 1e-20
sp|Q58092|TKTC_METJA Putative transketolase C-terminal sect... 64 8e-11
sp|O67036|DXS_AQUAE 1-deoxy-D-xylulose-5-phosphate synthase... 50 2e-06
sp|Q88QG7|DXS_PSEPK 1-deoxy-D-xylulose-5-phosphate synthase... 47 1e-05
>sp|Q60HC7|TKT_MACFA Transketolase (TK)
Length = 623
Score = 111 bits (277), Expect = 6e-25
Identities = 53/100 (53%), Positives = 72/100 (72%)
Frame = +3
Query: 3 TLHKSGVNVRVVDLFTIKPIDEELLRKCAHETRGHVLTVEDHYPEGGLGEAVTSALASEA 182
+L K +N+RV+D FTIKP+D +L+ A T+G +LTVEDHY EGG+GEAV+SA+ E
Sbjct: 521 SLKKEKINIRVLDPFTIKPLDRKLILDSARATKGRILTVEDHYYEGGIGEAVSSAVVGEP 580
Query: 183 GVIVKKLAVNGVPRSGQPEELLALFKIDASSIHDAITAMV 302
G+ V LAVN VPRSG+P ELL +F ID +I A+ ++
Sbjct: 581 GITVTHLAVNRVPRSGKPAELLKMFGIDKDAIAQAVKGLI 620
>sp|P29401|TKT_HUMAN Transketolase (TK)
Length = 623
Score = 110 bits (276), Expect = 8e-25
Identities = 53/99 (53%), Positives = 71/99 (71%)
Frame = +3
Query: 6 LHKSGVNVRVVDLFTIKPIDEELLRKCAHETRGHVLTVEDHYPEGGLGEAVTSALASEAG 185
L K +N+RV+D FTIKP+D +L+ A T+G +LTVEDHY EGG+GEAV+SA+ E G
Sbjct: 522 LKKEKINIRVLDPFTIKPLDRKLILDSARATKGRILTVEDHYYEGGIGEAVSSAVVGEPG 581
Query: 186 VIVKKLAVNGVPRSGQPEELLALFKIDASSIHDAITAMV 302
+ V LAVN VPRSG+P ELL +F ID +I A+ ++
Sbjct: 582 ITVTHLAVNRVPRSGKPAELLKMFGIDRDAIAQAVRGLI 620
>sp|Q5R1W6|TKT_PANTR Transketolase (TK)
Length = 623
Score = 110 bits (276), Expect = 8e-25
Identities = 53/99 (53%), Positives = 71/99 (71%)
Frame = +3
Query: 6 LHKSGVNVRVVDLFTIKPIDEELLRKCAHETRGHVLTVEDHYPEGGLGEAVTSALASEAG 185
L K +N+RV+D FTIKP+D +L+ A T+G +LTVEDHY EGG+GEAV+SA+ E G
Sbjct: 522 LKKEKINIRVLDPFTIKPLDRKLILDSARATKGRILTVEDHYYEGGIGEAVSSAVVGEPG 581
Query: 186 VIVKKLAVNGVPRSGQPEELLALFKIDASSIHDAITAMV 302
+ V LAVN VPRSG+P ELL +F ID +I A+ ++
Sbjct: 582 ITVTHLAVNRVPRSGKPAELLKMFGIDKDAIAQAVRGLI 620
>sp|P50137|TKT_RAT Transketolase (TK)
Length = 623
Score = 110 bits (274), Expect = 1e-24
Identities = 53/99 (53%), Positives = 72/99 (72%)
Frame = +3
Query: 6 LHKSGVNVRVVDLFTIKPIDEELLRKCAHETRGHVLTVEDHYPEGGLGEAVTSALASEAG 185
L K + VRV+D FTIKP+D++L+ CA T+G +LTVEDHY EGG+GEAV++ + E G
Sbjct: 522 LKKEKIGVRVLDPFTIKPLDKKLILDCARATKGRILTVEDHYYEGGIGEAVSAVVVGEPG 581
Query: 186 VIVKKLAVNGVPRSGQPEELLALFKIDASSIHDAITAMV 302
V V +LAV+ VPRSG+P ELL +F ID +I A+ +V
Sbjct: 582 VTVTRLAVSQVPRSGKPAELLKMFGIDKDAIVQAVKGLV 620
>sp|Q6B855|TKT_BOVIN Transketolase (TK)
Length = 623
Score = 109 bits (273), Expect = 2e-24
Identities = 53/99 (53%), Positives = 72/99 (72%)
Frame = +3
Query: 6 LHKSGVNVRVVDLFTIKPIDEELLRKCAHETRGHVLTVEDHYPEGGLGEAVTSALASEAG 185
L + +N+RV+D FTIKP+D++L+ A T+G +LTVEDHY EGG+GEAV SA+ E G
Sbjct: 522 LKREKINIRVLDPFTIKPLDKKLILDSARATKGRILTVEDHYYEGGIGEAVASAVVGEPG 581
Query: 186 VIVKKLAVNGVPRSGQPEELLALFKIDASSIHDAITAMV 302
V V +LAV+ VPRSG+P ELL +F ID +I A+ +V
Sbjct: 582 VTVTRLAVSQVPRSGKPAELLKMFGIDRDAIAQAVRGLV 620
>sp|P40142|TKT_MOUSE Transketolase (TK) (P68)
Length = 623
Score = 107 bits (268), Expect = 7e-24
Identities = 52/100 (52%), Positives = 73/100 (73%)
Frame = +3
Query: 3 TLHKSGVNVRVVDLFTIKPIDEELLRKCAHETRGHVLTVEDHYPEGGLGEAVTSALASEA 182
+L K +++RV+D FTIKP+D +L+ A T+G +LTVEDHY EGG+GEAV++A+ E
Sbjct: 521 SLKKDKISIRVLDPFTIKPLDRKLILDSARATKGRILTVEDHYYEGGIGEAVSAAVVGEP 580
Query: 183 GVIVKKLAVNGVPRSGQPEELLALFKIDASSIHDAITAMV 302
GV V +LAV+ VPRSG+P ELL +F ID +I A+ +V
Sbjct: 581 GVTVTRLAVSQVPRSGKPAELLKMFGIDKDAIVQAVKGLV 620
>sp|P51854|TKT2_HUMAN Transketolase-like 1 (Transketolase 2) (TK 2) (Transketolase
related protein)
Length = 557
Score = 97.1 bits (240), Expect = 1e-20
Identities = 47/99 (47%), Positives = 68/99 (68%)
Frame = +3
Query: 6 LHKSGVNVRVVDLFTIKPIDEELLRKCAHETRGHVLTVEDHYPEGGLGEAVTSALASEAG 185
L K + +RV+DLFTIKP+D + A T G ++TVEDHYP+GG+GEAV +A++ +
Sbjct: 457 LSKQDIFIRVIDLFTIKPLDVATIVSSAKATEGRIITVEDHYPQGGIGEAVCAAVSMDPD 516
Query: 186 VIVKKLAVNGVPRSGQPEELLALFKIDASSIHDAITAMV 302
+ V LAV+GVP+SG+ EELL ++ I A I A+ M+
Sbjct: 517 IQVHSLAVSGVPQSGKSEELLDMYGISARHIIVAVKCML 555
>sp|Q58092|TKTC_METJA Putative transketolase C-terminal section (TK)
Length = 316
Score = 64.3 bits (155), Expect = 8e-11
Identities = 39/95 (41%), Positives = 59/95 (62%), Gaps = 4/95 (4%)
Frame = +3
Query: 6 LHKSGVNVRVVDLFTIKPIDEELLRKCAHETRGHVLTVEDHYPEGGLGEAVTSALASEAG 185
L ++G++ +V++ TIKPIDEE+++K ++ V+TVEDH GGLG AV +AS
Sbjct: 217 LKENGISAEIVEMATIKPIDEEIIKK----SKDFVVTVEDHSIIGGLGGAVAEVIASNG- 271
Query: 186 VIVKKLAVNGV----PRSGQPEELLALFKIDASSI 278
+ KKL G+ RSG+ +ELL + +D SI
Sbjct: 272 -LNKKLLRIGINDVFGRSGKADELLKYYGLDGESI 305
>sp|O67036|DXS_AQUAE 1-deoxy-D-xylulose-5-phosphate synthase
(1-deoxyxylulose-5-phosphate synthase) (DXP synthase)
(DXPS)
Length = 628
Score = 49.7 bits (117), Expect = 2e-06
Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Frame = +3
Query: 6 LHKSGVNVRVVDLFTIKPIDEELLRKCAHETRGHVLTVEDHYPEGGLGEAVTSALASEAG 185
L+K G+ V VV+ +KP+DE++LR A+ +TVED+ GG G V A E
Sbjct: 523 LYKEGIRVGVVNARFVKPMDEKMLRDLANR-YDTFITVEDNTVVGGFGSGVLEFFAREG- 580
Query: 186 VIVKKLAVNGVP----RSGQPEELLALFKIDASSIHDAI 290
I+K++ GVP G+ + L L IDA I A+
Sbjct: 581 -IMKRVINLGVPDRFIEHGKQDILRNLVGIDAEGIEKAV 618
>sp|Q88QG7|DXS_PSEPK 1-deoxy-D-xylulose-5-phosphate synthase
(1-deoxyxylulose-5-phosphate synthase) (DXP synthase)
(DXPS)
Length = 631
Score = 47.4 bits (111), Expect = 1e-05
Identities = 34/98 (34%), Positives = 56/98 (57%), Gaps = 6/98 (6%)
Frame = +3
Query: 21 VNVRVVDLFTIKPIDEELLRKCA--HETRGHVLTVEDHYPEGGLGEAVTSALASEAGVIV 194
+N VVD+ +KP+DE L+ + A HE ++T+E++ GG G AV LAS+A ++
Sbjct: 532 INATVVDMRFVKPLDEALVLELAGSHEL---LVTIEENAIMGGAGAAVGEFLASQA--VL 586
Query: 195 KKLAVNGVP----RSGQPEELLALFKIDASSIHDAITA 296
K L G+P +P ++LA +DA+ I ++ A
Sbjct: 587 KPLLHLGLPDIYVEHAKPAQMLAECGLDAAGIEASVKA 624
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,985,367
Number of Sequences: 369166
Number of extensions: 680964
Number of successful extensions: 2055
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2025
length of database: 68,354,980
effective HSP length: 90
effective length of database: 51,728,830
effective search space used: 1707051390
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)