Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_N01
(361 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P53073|YGY1_YEAST Hypothetical 21.5 kDa protein in SEC15... 44 1e-04
sp|P57292|PANC_BUCAI Pantoate--beta-alanine ligase (Pantoth... 31 0.99
sp|P00548|KPYK_CHICK Pyruvate kinase, muscle isozyme 29 2.9
sp|P14680|YAK1_YEAST Protein kinase YAK1 28 4.9
sp|Q6FFC0|GLUQ_ACIAD Glutamyl-Q tRNA(Asp) synthetase (Glu-Q... 28 8.4
sp|Q89AT1|CVPA_BUCBP Colicin V production protein homolog 28 8.4
>sp|P53073|YGY1_YEAST Hypothetical 21.5 kDa protein in SEC15-SAP4 intergenic region
Length = 190
Score = 43.5 bits (101), Expect = 1e-04
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Frame = +2
Query: 26 TQFQ*FPIVMVFMMFLRPIQAIFSMQSTFQVIEGSAAS-----IQCFVYFLGNVLNLGLA 190
T Q PI+ M+ PI+AIFS +S F+ + G+ A+ F+Y + + + +
Sbjct: 96 TSLQIIPIMTALMLLSGPIKAIFSTRSAFKPVLGNKATQSQVQTAMFMYIVFQGVLMYIG 155
Query: 191 VYKCHIMGLLPTFASDWL 244
K + MGL+P DWL
Sbjct: 156 YRKLNSMGLIPNAKGDWL 173
>sp|P57292|PANC_BUCAI Pantoate--beta-alanine ligase (Pantothenate synthetase)
(Pantoate-activating enzyme)
Length = 285
Score = 30.8 bits (68), Expect = 0.99
Identities = 18/80 (22%), Positives = 41/80 (51%)
Frame = -3
Query: 347 VLKRKINILNY*MKIITLKFLQLTTRLS*EVQQKPTNLRQRWVIDPLYDIYTQLILSLIH 168
++K + LNY +KII+L ++L L+ + + ++ + LY I + +I
Sbjct: 158 IIKILVKELNYMIKIISLPTIRLKNGLALSSRNNYLSSQENEIAPYLYKIIKKTCEKIIK 217
Query: 167 YQENIQSIVLTQQNLLSLEK 108
+NI+ ++ + +L ++K
Sbjct: 218 EDDNIRPKIIHESKILLIKK 237
>sp|P00548|KPYK_CHICK Pyruvate kinase, muscle isozyme
Length = 530
Score = 29.3 bits (64), Expect = 2.9
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 105 DCMENIAWIGRKNIIKTITMGN 40
+C EN+ W+ KN+IK I +G+
Sbjct: 150 NCDENVLWVDYKNLIKVIDVGS 171
>sp|P14680|YAK1_YEAST Protein kinase YAK1
Length = 807
Score = 28.5 bits (62), Expect = 4.9
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = +2
Query: 95 SMQSTFQVIEGSAASIQCFVYFLGNVLNL 181
S+Q++ ++I+ + +C ++FLG VLNL
Sbjct: 659 SIQNSQELIDQEMQNRECLIHFLGGVLNL 687
>sp|Q6FFC0|GLUQ_ACIAD Glutamyl-Q tRNA(Asp) synthetase (Glu-Q-RSs)
Length = 292
Score = 27.7 bits (60), Expect = 8.4
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Frame = -3
Query: 347 VLKRKINILNY*MKIITLKFLQLTTRLS*EVQQKPTNLRQRWVIDPLYDIYTQLILSLIH 168
VLKR+ I+NY + ++ ++Q T + RQ W+ D L Y +L +
Sbjct: 163 VLKRRDGIINYQLAVVVDDYMQGMTHVVRGADLLDNTQRQIWLGDLLG--YPRLHYLHLP 220
Query: 167 YQENIQSIVLTQQNL---LSLEKSTAW 96
N Q L++QN+ L L K++ +
Sbjct: 221 LAMNAQGQKLSKQNMAAALDLSKASQY 247
>sp|Q89AT1|CVPA_BUCBP Colicin V production protein homolog
Length = 161
Score = 27.7 bits (60), Expect = 8.4
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 4 ILMWMAGNTISMISHSYGFYDVFTTYPSNIF 96
I +W+ G + + Y F+ +F+TY NIF
Sbjct: 31 IFIWIVG--VCVFFRYYSFFSIFSTYVRNIF 59
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,743,428
Number of Sequences: 369166
Number of extensions: 843593
Number of successful extensions: 1889
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1888
length of database: 68,354,980
effective HSP length: 87
effective length of database: 52,283,035
effective search space used: 1673057120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)