Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_M17
(637 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O88767|PARK7_RAT Protein DJ-1 (Contraception-associated ... 129 5e-30
sp|Q99LX0|PARK7_MOUSE Protein DJ-1 129 8e-30
sp|Q99497|PARK7_HUMAN Protein DJ-1 (Oncogene DJ1) 127 2e-29
sp|Q10356|YDB3_SCHPO Hypothetical protein C22E12.03c in chr... 104 2e-22
sp|Q46948|THIJ_ECOLI Protein thiJ 102 1e-21
sp|P55880|THIJ_SALTY Protein thiJ 99 1e-20
sp|O06006|YRAA_BACSU Hypothetical protein yraA 92 1e-18
sp|Q5HN59|Y1413_STAEQ Hypothetical protein SERP1413 86 1e-16
sp|Q49YS0|Y918_STAS1 Hypothetical protein SSP0918 85 2e-16
sp|Q4L7I2|Y1084_STAHJ Hypothetical protein SH1084 84 2e-16
>sp|O88767|PARK7_RAT Protein DJ-1 (Contraception-associated protein 1) (CAP1 protein)
(Fertility protein SP22)
Length = 189
Score = 129 bits (325), Expect = 5e-30
Identities = 71/181 (39%), Positives = 105/181 (58%), Gaps = 2/181 (1%)
Frame = +2
Query: 5 IIVANGSEDIEVVATSDVLSRGGIDVVIVGMEGSGNVKLAHKTVIVVEKSLADVKTT-LY 181
+I+A G+E++E V D++ R GI V + G+ G V+ + VI + SL + KT Y
Sbjct: 8 VILAKGAEEMETVIPVDIMRRAGIKVTVAGLAGKDPVQCSRDVVICPDTSLEEAKTQGPY 67
Query: 182 DALIIPGGMGGVKALSANENVKEMLYNHQKNKKVIGAICAGPLVLSAFGVAAGSTLTSYP 361
D +++PGG G + LS + VKE+L + K +I AICAGP L A V G +TS+P
Sbjct: 68 DVVVLPGGNLGAQNLSESALVKEILKEQENRKGLIAAICAGPTALLAHEVGFGCKVTSHP 127
Query: 362 SVKDQ-LTSADYKYKEERVVVDRNLVTSRGPGTAVEFGLKLVEVLKGADAVKGLAEQMLV 538
KD+ + + Y Y E RV D ++TSRGPGT+ EF L +VE L G D + +++
Sbjct: 128 LAKDKMMNGSHYSYSESRVEKDGLILTSRGPGTSFEFALAIVEALSGKDMANQVKAPLVL 187
Query: 539 K 541
K
Sbjct: 188 K 188
>sp|Q99LX0|PARK7_MOUSE Protein DJ-1
Length = 189
Score = 129 bits (323), Expect = 8e-30
Identities = 71/181 (39%), Positives = 105/181 (58%), Gaps = 2/181 (1%)
Frame = +2
Query: 5 IIVANGSEDIEVVATSDVLSRGGIDVVIVGMEGSGNVKLAHKTVIVVEKSLADVKTT-LY 181
+I+A G+E++E V DV+ R GI V + G+ G V+ + +I + SL D KT Y
Sbjct: 8 VILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVMICPDTSLEDAKTQGPY 67
Query: 182 DALIIPGGMGGVKALSANENVKEMLYNHQKNKKVIGAICAGPLVLSAFGVAAGSTLTSYP 361
D +++PGG G + LS + VKE+L + K +I AICAGP L A V G +T++P
Sbjct: 68 DVVVLPGGNLGAQNLSESPMVKEILKEQESRKGLIAAICAGPTALLAHEVGFGCKVTTHP 127
Query: 362 SVKDQ-LTSADYKYKEERVVVDRNLVTSRGPGTAVEFGLKLVEVLKGADAVKGLAEQMLV 538
KD+ + + Y Y E RV D ++TSRGPGT+ EF L +VE L G D + +++
Sbjct: 128 LAKDKMMNGSHYSYSESRVEKDGLILTSRGPGTSFEFALAIVEALVGKDMANQVKAPLVL 187
Query: 539 K 541
K
Sbjct: 188 K 188
>sp|Q99497|PARK7_HUMAN Protein DJ-1 (Oncogene DJ1)
Length = 189
Score = 127 bits (320), Expect = 2e-29
Identities = 70/181 (38%), Positives = 104/181 (57%), Gaps = 2/181 (1%)
Frame = +2
Query: 5 IIVANGSEDIEVVATSDVLSRGGIDVVIVGMEGSGNVKLAHKTVIVVEKSLADVKTT-LY 181
+I+A G+E++E V DV+ R GI V + G+ G V+ + VI + SL D K Y
Sbjct: 8 VILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPY 67
Query: 182 DALIIPGGMGGVKALSANENVKEMLYNHQKNKKVIGAICAGPLVLSAFGVAAGSTLTSYP 361
D +++PGG G + LS + VKE+L + K +I AICAGP L A + GS +T++P
Sbjct: 68 DVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVTTHP 127
Query: 362 SVKDQ-LTSADYKYKEERVVVDRNLVTSRGPGTAVEFGLKLVEVLKGADAVKGLAEQMLV 538
KD+ + Y Y E RV D ++TSRGPGT+ EF L +VE L G + + +++
Sbjct: 128 LAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 187
Query: 539 K 541
K
Sbjct: 188 K 188
>sp|Q10356|YDB3_SCHPO Hypothetical protein C22E12.03c in chromosome I
Length = 191
Score = 104 bits (260), Expect = 2e-22
Identities = 65/176 (36%), Positives = 97/176 (55%), Gaps = 8/176 (4%)
Frame = +2
Query: 2 CIIVANGSEDIEVVATSDVLSRGGI--DVVIVGMEGSGNVKLAHKTVIVVEKSLADVKTT 175
C+ VA+G+++IE A + R I D V VG VK++ + +S ++ +
Sbjct: 5 CLFVADGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSA 64
Query: 176 -----LYDALIIPGGMGGVKALSANENVKEMLYN-HQKNKKVIGAICAGPLVLSAFGVAA 337
YD IIPGG G K LS V++++ ++K K IG ICAG L G+
Sbjct: 65 DDFAKQYDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMICAGTLTAKTSGLP- 123
Query: 338 GSTLTSYPSVKDQLTSADYKYKEERVVVDRNLVTSRGPGTAVEFGLKLVEVLKGAD 505
+T +PSV+ QL YKY ++ VV++ NL+TS+GPGTA+ FGLKL+E + D
Sbjct: 124 NKQITGHPSVRGQLEEGGYKYLDQPVVLEENLITSQGPGTAMLFGLKLLEQVASKD 179
>sp|Q46948|THIJ_ECOLI Protein thiJ
Length = 196
Score = 102 bits (253), Expect = 1e-21
Identities = 56/183 (30%), Positives = 106/183 (57%), Gaps = 5/183 (2%)
Frame = +2
Query: 5 IIVANGSEDIEVVATSDVLSRGGIDVVIVGMEGSGNVKL--AHKTVIVVEKSLADVKTTL 178
+ +A GSE+ E V T D+L RGGI V + GN+ + + ++ + L +V
Sbjct: 7 VCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGE 66
Query: 179 YDALIIPGGMGGVKALSANENVKEMLYNHQKNKKVIGAICAGPL-VLSAFGVAAGSTLTS 355
YD +++PGG+ G + + + E + ++ +++ AICA P VL + +T
Sbjct: 67 YDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTG 126
Query: 356 YPSVKDQLTSADYKYKEERVVVDRN--LVTSRGPGTAVEFGLKLVEVLKGADAVKGLAEQ 529
+P++KD++ + ++ ++RVV D L+TS+GPGTA++FGLK++++L G + +A Q
Sbjct: 127 FPTLKDKIPAE--QWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLVGREKAHEVASQ 184
Query: 530 MLV 538
+++
Sbjct: 185 LVM 187
>sp|P55880|THIJ_SALTY Protein thiJ
Length = 196
Score = 98.6 bits (244), Expect = 1e-20
Identities = 55/183 (30%), Positives = 105/183 (57%), Gaps = 5/183 (2%)
Frame = +2
Query: 5 IIVANGSEDIEVVATSDVLSRGGIDVVIVGMEGSGNVKL--AHKTVIVVEKSLADVKTTL 178
+ +A GSE+ E V T D+L RGGI V + GN+ + + ++ + L +V
Sbjct: 7 VCLAPGSEETEAVTTIDLLVRGGIHVTTASVASDGNLTIVCSRGVKLLADAPLVEVADGD 66
Query: 179 YDALIIPGGMGGVKALSANENVKEMLYNHQKNKKVIGAICAGPL-VLSAFGVAAGSTLTS 355
YD +++PGG+ G + + + E + ++ +++ AICA VL + +T
Sbjct: 67 YDIIVLPGGIKGAECFRDSPLLVETVKQFHRSGRIVAAICAAAATVLVPHDIFPIGNMTG 126
Query: 356 YPSVKDQLTSADYKYKEERVVVDRN--LVTSRGPGTAVEFGLKLVEVLKGADAVKGLAEQ 529
+P++KD++ + ++ ++RVV D L+TS+GPGTA++FGLK++++L G + +A Q
Sbjct: 127 FPALKDKIPAE--QWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLAGREKAHEVASQ 184
Query: 530 MLV 538
+++
Sbjct: 185 LVM 187
>sp|O06006|YRAA_BACSU Hypothetical protein yraA
Length = 169
Score = 91.7 bits (226), Expect = 1e-18
Identities = 54/164 (32%), Positives = 83/164 (50%)
Frame = +2
Query: 5 IIVANGSEDIEVVATSDVLSRGGIDVVIVGMEGSGNVKLAHKTVIVVEKSLADVKTTLYD 184
++V + EDIE + G VV + +E V H + ++K+++DV + +D
Sbjct: 7 VLVTDQFEDIEYTSPVKAYEEAGYSVVAIDLEAGKEVTGKHGEKVKIDKAISDVDASDFD 66
Query: 185 ALIIPGGMGGVKALSANENVKEMLYNHQKNKKVIGAICAGPLVLSAFGVAAGSTLTSYPS 364
AL+IPGG L A++ E +NKK + AIC GP VL + G +T Y S
Sbjct: 67 ALLIPGGFSP-DLLRADDRPGEFAKAFVENKKPVFAICHGPQVLIDTDLLKGKDITGYRS 125
Query: 365 VKDQLTSADYKYKEERVVVDRNLVTSRGPGTAVEFGLKLVEVLK 496
++ L +A YK+ VVV N+VTSR P F + + +LK
Sbjct: 126 IRKDLINAGANYKDAEVVVSHNIVTSRTPDDLEAFNRESLNLLK 169
>sp|Q5HN59|Y1413_STAEQ Hypothetical protein SERP1413
Length = 172
Score = 85.5 bits (210), Expect = 1e-16
Identities = 56/165 (33%), Positives = 82/165 (49%), Gaps = 1/165 (0%)
Frame = +2
Query: 5 IIVANGSEDIEVVATSDVLSRGGIDVVIVGMEGSGNVKLAHKTVIVVEKSLADVKTTLYD 184
II+A+ EDIE+ + + L G + ++G + V H + V+ S+AD K YD
Sbjct: 7 IILADEFEDIELTSPKEALENAGFETEVIGDTANHEVVGKHGEKVTVDVSIADAKPENYD 66
Query: 185 ALIIPGGMGGVKALSANENVKEMLYNH-QKNKKVIGAICAGPLVLSAFGVAAGSTLTSYP 361
AL+IPGG E + KN AIC GPLVL G T+T
Sbjct: 67 ALLIPGGFSPDHLRGDEEGRYGTFAKYFTKNDVPTFAICHGPLVLVDTDDLKGRTITGVI 126
Query: 362 SVKDQLTSADYKYKEERVVVDRNLVTSRGPGTAVEFGLKLVEVLK 496
+V+ L++A +E VVVD N+VTSR P +F ++V+ L+
Sbjct: 127 NVRKDLSNAGANVVDESVVVDNNIVTSRVPDDLDDFNREIVKKLE 171
>sp|Q49YS0|Y918_STAS1 Hypothetical protein SSP0918
Length = 172
Score = 84.7 bits (208), Expect = 2e-16
Identities = 54/164 (32%), Positives = 82/164 (50%), Gaps = 1/164 (0%)
Frame = +2
Query: 5 IIVANGSEDIEVVATSDVLSRGGIDVVIVGMEGSGNVKLAHKTVIVVEKSLADVKTTLYD 184
II+ N EDIE+ + + + G + V++G + + V H T + V+ S+AD K +D
Sbjct: 7 IILTNEFEDIELTSPKEAIEEAGHETVVIGDQANSEVVGKHGTKVAVDVSIADAKPEDFD 66
Query: 185 ALIIPGGMGGVKALSANENVKEMLYNH-QKNKKVIGAICAGPLVLSAFGVAAGSTLTSYP 361
L+IPGG E + KN AIC GP +L G TLT+
Sbjct: 67 GLLIPGGFSPDHLRGDAEGRYGTFAKYFTKNDVPAFAICHGPQILIDTDDLNGRTLTAVL 126
Query: 362 SVKDQLTSADYKYKEERVVVDRNLVTSRGPGTAVEFGLKLVEVL 493
+V+ L +A + +E VVVD+N+VTSR P +F ++V L
Sbjct: 127 NVRKDLANAGAQVVDESVVVDKNIVTSRTPDDLDDFNREIVNQL 170
>sp|Q4L7I2|Y1084_STAHJ Hypothetical protein SH1084
Length = 172
Score = 84.3 bits (207), Expect = 2e-16
Identities = 54/165 (32%), Positives = 83/165 (50%), Gaps = 1/165 (0%)
Frame = +2
Query: 5 IIVANGSEDIEVVATSDVLSRGGIDVVIVGMEGSGNVKLAHKTVIVVEKSLADVKTTLYD 184
II++N EDIE+ + + + G + I+G + V H ++V+ S+AD K YD
Sbjct: 7 IILSNEFEDIELTSPKEAIEEAGFETEIIGDTANAEVVGKHGEKVIVDVSIADAKPEDYD 66
Query: 185 ALIIPGGMGGVKALSANENVKEMLYNH-QKNKKVIGAICAGPLVLSAFGVAAGSTLTSYP 361
L+IPGG E + KN AIC GP +L G TLT+
Sbjct: 67 GLLIPGGFSPDHLRGDAEGRYGTFAKYFTKNDVPAFAICHGPQILIDTDDLNGRTLTAVL 126
Query: 362 SVKDQLTSADYKYKEERVVVDRNLVTSRGPGTAVEFGLKLVEVLK 496
+V+ L++A +E VVVD+N+VTSR P +F ++V+ L+
Sbjct: 127 NVRKDLSNAGANVVDESVVVDKNIVTSRTPDDLDDFNREIVKQLQ 171
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,777,251
Number of Sequences: 369166
Number of extensions: 1214876
Number of successful extensions: 3900
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3875
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5121172350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)